Wall clock time and date at job start Tue Mar 31 2020 13:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50693 * 109.47161 * 2 1 4 4 C 1.37471 * 123.35588 * 264.97835 * 3 2 1 5 5 C 1.33817 * 115.10478 * 180.02562 * 4 3 2 6 6 S 1.70618 * 110.95129 * 359.72904 * 5 4 3 7 7 C 1.36647 * 123.34981 * 85.00045 * 3 2 1 8 8 C 1.46581 * 125.45726 * 359.97438 * 7 3 2 9 9 O 1.21706 * 120.00218 * 49.04375 * 8 7 3 10 10 N 1.34779 * 120.00170 * 229.03905 * 8 7 3 11 11 C 1.46926 * 120.62958 * 355.51851 * 10 8 7 12 12 C 1.53192 * 108.77158 * 126.66560 * 11 10 8 13 13 C 1.53036 * 109.31404 * 54.64024 * 12 11 10 14 14 N 1.46497 * 109.45170 * 178.62077 * 13 12 11 15 15 C 1.46500 * 120.00156 * 60.05380 * 14 13 12 16 16 C 1.36934 * 119.99957 * 240.05905 * 14 13 12 17 17 H 1.08006 * 120.00553 * 17.60123 * 16 14 13 18 18 C 1.38812 * 120.00323 * 197.59556 * 16 14 13 19 19 N 1.31620 * 119.99626 * 11.18268 * 18 16 14 20 20 Si 1.86803 * 120.00541 * 191.18131 * 18 16 14 21 21 H 1.48493 * 109.46935 * 60.00006 * 20 18 16 22 22 H 1.48500 * 109.47423 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.46852 * 300.00161 * 20 18 16 24 24 C 1.53044 * 109.53704 * 298.62854 * 13 12 11 25 25 C 1.46931 * 120.63145 * 175.80360 * 10 8 7 26 26 H 1.08996 * 109.47132 * 300.00043 * 1 2 3 27 27 H 1.08999 * 109.47354 * 60.00081 * 1 2 3 28 28 H 1.09001 * 109.47159 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46853 * 240.00493 * 2 1 3 30 30 H 1.08993 * 109.46899 * 120.00430 * 2 1 3 31 31 H 1.08003 * 122.44924 * 0.04450 * 4 3 2 32 32 H 1.07999 * 124.52306 * 179.97438 * 5 4 3 33 33 H 1.08996 * 109.58980 * 246.45396 * 11 10 8 34 34 H 1.08998 * 109.58504 * 6.88131 * 11 10 8 35 35 H 1.08995 * 109.50092 * 294.68256 * 12 11 10 36 36 H 1.09006 * 109.49332 * 174.58576 * 12 11 10 37 37 H 1.08997 * 109.46701 * 58.64973 * 13 12 11 38 38 H 1.09003 * 109.46718 * 95.40102 * 15 14 13 39 39 H 1.08997 * 109.47456 * 215.39561 * 15 14 13 40 40 H 1.08993 * 109.47392 * 335.40244 * 15 14 13 41 41 H 0.97007 * 120.00163 * 179.97438 * 19 18 16 42 42 H 1.08994 * 109.49590 * 301.42054 * 24 13 12 43 43 H 1.08997 * 109.52671 * 181.32961 * 24 13 12 44 44 H 1.09001 * 109.58564 * 353.11599 * 25 10 8 45 45 H 1.08993 * 109.58819 * 113.40252 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3791 2.0999 -1.1438 5 6 2.8052 3.3539 -0.9525 6 16 2.7863 3.7584 0.7049 7 6 2.1890 2.1622 1.1371 8 6 1.8996 1.7024 2.4985 9 8 2.3325 0.6325 2.8845 10 7 1.1540 2.4646 3.3230 11 6 0.7066 3.8008 2.9069 12 6 -0.8129 3.8883 3.0809 13 6 -1.1792 3.5231 4.5212 14 7 -2.6287 3.6377 4.7000 15 6 -3.5338 2.8211 3.8874 16 6 -3.1377 4.5081 5.6265 17 1 -2.5192 5.3020 6.0187 18 6 -4.4486 4.3704 6.0617 19 7 -5.1319 3.2868 5.7594 20 14 -5.2430 5.7228 7.0763 21 1 -5.2552 6.9855 6.2950 22 1 -6.6363 5.3352 7.4135 23 1 -4.4687 5.9225 8.3277 24 6 -0.7418 2.0856 4.8119 25 6 0.7785 1.9777 4.6575 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 2.3122 1.6540 -2.1253 32 1 3.1155 4.0221 -1.7422 33 1 1.1894 4.5571 3.5257 34 1 0.9644 3.9630 1.8603 35 1 -1.2983 3.1942 2.3949 36 1 -1.1456 4.9041 2.8673 37 1 -0.6739 4.2022 5.2079 38 1 -3.8051 1.9210 4.4392 39 1 -4.4335 3.3927 3.6599 40 1 -3.0362 2.5417 2.9588 41 1 -6.0479 3.1904 6.0638 42 1 -1.2278 1.4085 4.1095 43 1 -1.0239 1.8177 5.8300 44 1 1.0838 0.9369 4.7659 45 1 1.2692 2.5837 5.4190 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985805858.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:08 Heat of formation + Delta-G solvation = 20.871055 kcal Electronic energy + Delta-G solvation = -25918.562020 eV Core-core repulsion = 22449.418245 eV Total energy + Delta-G solvation = -3469.143775 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.21874 -38.45280 -37.26374 -35.07744 -32.90231 -32.29202 -31.10413 -29.88932 -29.01818 -26.02233 -25.75420 -24.59239 -22.95456 -22.52794 -22.21395 -20.72125 -19.10618 -18.36038 -17.83328 -16.78252 -16.33542 -15.94038 -15.06465 -15.05050 -14.96000 -14.14138 -14.03555 -13.86832 -13.73955 -13.46559 -13.19417 -13.16856 -12.99766 -12.53933 -12.39488 -12.21347 -11.92776 -11.74016 -11.51831 -11.47995 -11.08217 -10.94643 -10.88706 -10.83727 -10.76435 -10.34500 -10.26383 -10.14184 -9.87475 -9.81536 -9.62345 -8.89723 -8.57411 -8.48434 -8.44942 -6.80441 -5.69947 -3.13058 0.49847 1.26572 1.73553 2.32962 2.87838 3.22226 3.38712 3.44293 3.44901 4.48095 4.52638 4.65072 4.99619 5.02980 5.06344 5.23318 5.25779 5.33574 5.36001 5.41188 5.49341 5.56523 5.60848 5.67415 5.75889 5.86754 5.88132 5.92293 6.02022 6.13431 6.14914 6.22929 6.28388 6.32251 6.36991 6.51815 6.60951 6.80829 6.97139 6.98647 7.45933 7.48106 7.72863 7.84852 8.17063 8.39218 9.25427 9.89197 10.36361 11.34482 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.020051 B = 0.003362 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.137501 B = 8325.830534 C = 8545.965902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.076 4.076 3 C -0.034 4.034 4 C -0.139 4.139 5 C -0.246 4.246 6 S 0.209 5.791 7 C -0.257 4.257 8 C 0.592 3.408 9 O -0.534 6.534 10 N -0.597 5.597 11 C 0.097 3.903 12 C -0.144 4.144 13 C 0.180 3.820 14 N -0.598 5.598 15 C 0.167 3.833 16 C -0.252 4.252 17 H 0.069 0.931 18 C -0.001 4.001 19 N -0.911 5.911 20 Si 0.905 3.095 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.284 1.284 24 C -0.144 4.144 25 C 0.115 3.885 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.142 0.858 32 H 0.167 0.833 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.063 0.937 38 H 0.024 0.976 39 H 0.048 0.952 40 H -0.006 1.006 41 H 0.252 0.748 42 H 0.060 0.940 43 H 0.076 0.924 44 H 0.087 0.913 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.574 -0.911 -13.453 20.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.115 4.115 3 C -0.048 4.048 4 C -0.171 4.171 5 C -0.383 4.383 6 S 0.478 5.522 7 C -0.377 4.377 8 C 0.378 3.622 9 O -0.413 6.413 10 N -0.329 5.329 11 C -0.027 4.027 12 C -0.185 4.185 13 C 0.071 3.929 14 N -0.320 5.320 15 C 0.023 3.977 16 C -0.382 4.382 17 H 0.087 0.913 18 C -0.198 4.198 19 N -0.557 5.557 20 Si 0.736 3.264 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.210 1.210 24 C -0.185 4.185 25 C -0.007 4.007 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.107 0.893 31 H 0.160 0.840 32 H 0.184 0.816 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.081 0.919 38 H 0.043 0.957 39 H 0.067 0.933 40 H 0.013 0.987 41 H 0.062 0.938 42 H 0.079 0.921 43 H 0.095 0.905 44 H 0.105 0.895 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 15.971 -0.157 -12.371 20.202 hybrid contribution -0.954 -0.406 -0.471 1.139 sum 15.017 -0.563 -12.843 19.767 Atomic orbital electron populations 1.21701 0.94189 1.02031 1.02208 1.20407 0.96366 0.90891 1.03820 1.19373 0.97695 0.97282 0.90467 1.19856 1.03518 0.94228 0.99494 1.25302 1.09140 1.01449 1.02428 1.83186 1.60305 1.10381 0.98313 1.24385 1.16174 0.99413 0.97742 1.16975 0.78338 0.83964 0.82895 1.90786 1.52543 1.22519 1.75456 1.48073 1.50971 1.17442 1.16440 1.22155 0.96861 0.83034 1.00605 1.22460 0.92552 1.02539 1.00922 1.20257 0.86165 0.93468 0.92968 1.43989 0.98715 1.46986 1.42274 1.20770 0.92148 0.95112 0.89672 1.19231 0.96203 1.05723 1.17005 0.91279 1.24930 0.98140 0.97127 0.99651 1.70097 1.10554 1.25586 1.49494 0.86321 0.78509 0.81534 0.80075 1.21181 1.21689 1.21049 1.22513 0.92630 1.00606 1.02729 1.21743 0.96506 1.00712 0.81729 0.92479 0.92653 0.92076 0.90812 0.89282 0.84042 0.81584 0.91031 0.90074 0.91866 0.90646 0.91906 0.95741 0.93300 0.98740 0.93788 0.92146 0.90501 0.89495 0.91491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.90 37.16 0.37 -1.28 16 2 C -0.08 -0.87 5.94 -27.88 -0.17 -1.04 16 3 C -0.03 -0.41 5.16 -105.48 -0.54 -0.95 16 4 C -0.14 -1.37 9.96 -41.41 -0.41 -1.79 16 5 C -0.25 -2.20 10.92 29.18 0.32 -1.88 16 6 S 0.21 2.12 20.14 -107.50 -2.16 -0.04 16 7 C -0.26 -3.41 5.38 -36.79 -0.20 -3.60 16 8 C 0.59 9.24 7.18 -12.90 -0.09 9.15 16 9 O -0.53 -9.74 15.11 5.18 0.08 -9.66 16 10 N -0.60 -8.89 2.97 -174.34 -0.52 -9.41 16 11 C 0.10 1.31 5.93 -3.71 -0.02 1.29 16 12 C -0.14 -2.36 5.32 -26.61 -0.14 -2.50 16 13 C 0.18 3.47 2.55 -67.89 -0.17 3.30 16 14 N -0.60 -14.48 2.82 -173.44 -0.49 -14.97 16 15 C 0.17 4.10 8.01 59.85 0.48 4.58 16 16 C -0.25 -6.75 9.68 -15.06 -0.15 -6.89 16 17 H 0.07 1.79 7.76 -52.48 -0.41 1.38 16 18 C 0.00 -0.03 5.16 -17.43 -0.09 -0.12 16 19 N -0.91 -26.31 10.30 55.49 0.57 -25.74 16 20 Si 0.91 21.61 29.57 -169.99 -5.03 16.58 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 C -0.14 -2.58 5.34 -26.61 -0.14 -2.72 16 25 C 0.12 1.77 6.42 -3.70 -0.02 1.74 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.68 8.12 -51.93 -0.42 0.26 16 30 H 0.09 1.21 6.65 -51.93 -0.35 0.86 16 31 H 0.14 1.08 8.06 -52.48 -0.42 0.66 16 32 H 0.17 1.04 8.06 -52.49 -0.42 0.61 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.08 0.99 4.17 -33.93 -0.14 0.85 16 35 H 0.06 1.10 6.72 -51.93 -0.35 0.75 16 36 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.06 1.21 7.83 -51.93 -0.41 0.81 16 38 H 0.02 0.65 7.49 -51.93 -0.39 0.26 16 39 H 0.05 1.30 6.92 -51.93 -0.36 0.94 16 40 H -0.01 -0.13 6.47 -51.93 -0.34 -0.46 16 41 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 42 H 0.06 1.15 7.72 -51.93 -0.40 0.75 16 43 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 44 H 0.09 1.37 7.03 -51.93 -0.37 1.01 16 45 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 363.38 15.07 5.48 5.48 Total: -1.00 -30.81 363.38 -9.92 -40.73 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -6.86 Total: -0.26 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: -0.98 Total: -2.71 kcal Atomic # 7 Polarization: -49.69 SS G_CDS: -0.44 Total: -50.12 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.08 Total: -9.66 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal Atomic # 16 Polarization: 2.12 SS G_CDS: -2.16 Total: -0.04 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.81 -9.92 -40.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985805858.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.602 kcal (2) G-P(sol) polarization free energy of solvation -30.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds