Wall clock time and date at job start Tue Mar 31 2020 13:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50693 * 109.47161 * 2 1 4 4 C 1.37471 * 123.35588 * 264.97835 * 3 2 1 5 5 C 1.33817 * 115.10478 * 180.02562 * 4 3 2 6 6 S 1.70618 * 110.95129 * 359.72904 * 5 4 3 7 7 C 1.36647 * 123.34981 * 85.00045 * 3 2 1 8 8 C 1.46581 * 125.45726 * 359.97438 * 7 3 2 9 9 O 1.21706 * 120.00218 * 49.04375 * 8 7 3 10 10 N 1.34779 * 120.00170 * 229.03905 * 8 7 3 11 11 C 1.46926 * 120.62958 * 355.51851 * 10 8 7 12 12 C 1.53192 * 108.77158 * 126.66560 * 11 10 8 13 13 C 1.53036 * 109.31404 * 54.64024 * 12 11 10 14 14 N 1.46497 * 109.45170 * 178.62077 * 13 12 11 15 15 C 1.46500 * 120.00156 * 60.05380 * 14 13 12 16 16 C 1.36934 * 119.99957 * 240.05905 * 14 13 12 17 17 H 1.08006 * 120.00553 * 17.60123 * 16 14 13 18 18 C 1.38812 * 120.00323 * 197.59556 * 16 14 13 19 19 N 1.31620 * 119.99626 * 11.18268 * 18 16 14 20 20 Si 1.86803 * 120.00541 * 191.18131 * 18 16 14 21 21 H 1.48493 * 109.46935 * 60.00006 * 20 18 16 22 22 H 1.48500 * 109.47423 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.46852 * 300.00161 * 20 18 16 24 24 C 1.53044 * 109.53704 * 298.62854 * 13 12 11 25 25 C 1.46931 * 120.63145 * 175.80360 * 10 8 7 26 26 H 1.08996 * 109.47132 * 300.00043 * 1 2 3 27 27 H 1.08999 * 109.47354 * 60.00081 * 1 2 3 28 28 H 1.09001 * 109.47159 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46853 * 240.00493 * 2 1 3 30 30 H 1.08993 * 109.46899 * 120.00430 * 2 1 3 31 31 H 1.08003 * 122.44924 * 0.04450 * 4 3 2 32 32 H 1.07999 * 124.52306 * 179.97438 * 5 4 3 33 33 H 1.08996 * 109.58980 * 246.45396 * 11 10 8 34 34 H 1.08998 * 109.58504 * 6.88131 * 11 10 8 35 35 H 1.08995 * 109.50092 * 294.68256 * 12 11 10 36 36 H 1.09006 * 109.49332 * 174.58576 * 12 11 10 37 37 H 1.08997 * 109.46701 * 58.64973 * 13 12 11 38 38 H 1.09003 * 109.46718 * 95.40102 * 15 14 13 39 39 H 1.08997 * 109.47456 * 215.39561 * 15 14 13 40 40 H 1.08993 * 109.47392 * 335.40244 * 15 14 13 41 41 H 0.97007 * 120.00163 * 179.97438 * 19 18 16 42 42 H 1.08994 * 109.49590 * 301.42054 * 24 13 12 43 43 H 1.08997 * 109.52671 * 181.32961 * 24 13 12 44 44 H 1.09001 * 109.58564 * 353.11599 * 25 10 8 45 45 H 1.08993 * 109.58819 * 113.40252 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3791 2.0999 -1.1438 5 6 2.8052 3.3539 -0.9525 6 16 2.7863 3.7584 0.7049 7 6 2.1890 2.1622 1.1371 8 6 1.8996 1.7024 2.4985 9 8 2.3325 0.6325 2.8845 10 7 1.1540 2.4646 3.3230 11 6 0.7066 3.8008 2.9069 12 6 -0.8129 3.8883 3.0809 13 6 -1.1792 3.5231 4.5212 14 7 -2.6287 3.6377 4.7000 15 6 -3.5338 2.8211 3.8874 16 6 -3.1377 4.5081 5.6265 17 1 -2.5192 5.3020 6.0187 18 6 -4.4486 4.3704 6.0617 19 7 -5.1319 3.2868 5.7594 20 14 -5.2430 5.7228 7.0763 21 1 -5.2552 6.9855 6.2950 22 1 -6.6363 5.3352 7.4135 23 1 -4.4687 5.9225 8.3277 24 6 -0.7418 2.0856 4.8119 25 6 0.7785 1.9777 4.6575 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 2.3122 1.6540 -2.1253 32 1 3.1155 4.0221 -1.7422 33 1 1.1894 4.5571 3.5257 34 1 0.9644 3.9630 1.8603 35 1 -1.2983 3.1942 2.3949 36 1 -1.1456 4.9041 2.8673 37 1 -0.6739 4.2022 5.2079 38 1 -3.8051 1.9210 4.4392 39 1 -4.4335 3.3927 3.6599 40 1 -3.0362 2.5417 2.9588 41 1 -6.0479 3.1904 6.0638 42 1 -1.2278 1.4085 4.1095 43 1 -1.0239 1.8177 5.8300 44 1 1.0838 0.9369 4.7659 45 1 1.2692 2.5837 5.4190 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985805858.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:07 Heat of formation + Delta-G solvation = 4.236176 kcal Electronic energy + Delta-G solvation = -25919.283362 eV Core-core repulsion = 22449.418245 eV Total energy + Delta-G solvation = -3469.865117 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.39649 -39.51427 -38.56960 -36.73393 -34.00538 -33.75738 -32.44667 -31.51968 -30.09894 -28.05525 -26.88868 -25.91616 -24.24946 -23.89868 -23.27266 -21.99090 -20.49088 -19.25283 -19.01742 -18.74617 -17.52384 -16.93174 -16.90780 -16.21892 -15.95654 -15.69988 -15.14829 -15.13366 -15.01557 -14.74361 -14.62989 -14.45205 -14.08307 -13.95097 -13.69071 -13.38725 -13.24263 -13.07891 -12.83693 -12.72049 -12.60573 -12.41257 -12.34009 -12.23761 -12.10659 -11.99817 -11.79929 -11.72520 -11.61266 -11.28058 -11.04232 -10.59078 -9.86064 -9.62927 -9.28487 -8.80674 -7.78311 -5.23140 -0.34999 0.42025 0.96941 1.47886 1.48946 1.50825 1.57241 1.76041 2.10884 2.53133 3.34887 3.46711 3.61125 3.84091 3.88440 4.04610 4.12374 4.13919 4.25940 4.34395 4.34642 4.41162 4.47629 4.52550 4.66275 4.72568 4.73548 4.78296 4.85796 4.90295 4.96046 5.02689 5.05671 5.09620 5.24187 5.26142 5.36661 5.42955 5.46200 5.48452 5.56965 5.65096 5.75673 6.28535 6.34135 6.99378 7.17963 7.91142 8.34209 9.24932 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.020051 B = 0.003362 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.137501 B = 8325.830534 C = 8545.965902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.075 4.075 3 C -0.036 4.036 4 C -0.151 4.151 5 C -0.228 4.228 6 S 0.235 5.765 7 C -0.302 4.302 8 C 0.591 3.409 9 O -0.571 6.571 10 N -0.600 5.600 11 C 0.104 3.896 12 C -0.132 4.132 13 C 0.175 3.825 14 N -0.612 5.612 15 C 0.188 3.812 16 C -0.257 4.257 17 H 0.078 0.922 18 C -0.058 4.058 19 N -0.945 5.945 20 Si 0.969 3.031 21 H -0.277 1.277 22 H -0.299 1.299 23 H -0.276 1.276 24 C -0.131 4.131 25 C 0.124 3.876 26 H 0.026 0.974 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.099 0.901 30 H 0.061 0.939 31 H 0.167 0.833 32 H 0.200 0.800 33 H 0.094 0.906 34 H 0.100 0.900 35 H 0.049 0.951 36 H 0.079 0.921 37 H 0.067 0.933 38 H -0.007 1.007 39 H 0.021 0.979 40 H 0.019 0.981 41 H 0.245 0.755 42 H 0.041 0.959 43 H 0.058 0.942 44 H 0.079 0.921 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.542 1.067 -15.374 23.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.115 4.115 3 C -0.051 4.051 4 C -0.182 4.182 5 C -0.365 4.365 6 S 0.504 5.496 7 C -0.421 4.421 8 C 0.379 3.621 9 O -0.452 6.452 10 N -0.331 5.331 11 C -0.019 4.019 12 C -0.172 4.172 13 C 0.068 3.932 14 N -0.335 5.335 15 C 0.043 3.957 16 C -0.387 4.387 17 H 0.096 0.904 18 C -0.252 4.252 19 N -0.593 5.593 20 Si 0.798 3.202 21 H -0.203 1.203 22 H -0.226 1.226 23 H -0.202 1.202 24 C -0.172 4.172 25 C 0.002 3.998 26 H 0.045 0.955 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.118 0.882 30 H 0.080 0.920 31 H 0.184 0.816 32 H 0.217 0.783 33 H 0.112 0.888 34 H 0.117 0.883 35 H 0.068 0.932 36 H 0.098 0.902 37 H 0.086 0.914 38 H 0.012 0.988 39 H 0.040 0.960 40 H 0.037 0.963 41 H 0.054 0.946 42 H 0.060 0.940 43 H 0.077 0.923 44 H 0.098 0.902 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 17.982 1.849 -14.302 23.050 hybrid contribution -1.489 -1.032 0.050 1.812 sum 16.494 0.817 -14.251 21.813 Atomic orbital electron populations 1.21653 0.94333 1.02316 1.01324 1.20398 0.96178 0.91200 1.03699 1.19641 0.97036 0.97292 0.91126 1.20054 1.03797 0.94584 0.99722 1.25746 1.06836 1.01446 1.02448 1.83018 1.59500 1.07915 0.99136 1.24298 1.19186 1.01990 0.96640 1.17345 0.77633 0.83311 0.83763 1.90755 1.54000 1.24044 1.76419 1.48126 1.50878 1.17985 1.16137 1.22218 0.94574 0.82754 1.02359 1.22262 0.94738 1.02192 0.98006 1.20497 0.83471 0.94136 0.95105 1.44218 1.00742 1.46622 1.41876 1.20395 0.91617 0.93376 0.90281 1.19641 0.96441 1.06042 1.16596 0.90385 1.25707 0.98925 0.99178 1.01408 1.70287 1.10370 1.27458 1.51157 0.85301 0.76981 0.79066 0.78853 1.20324 1.22560 1.20196 1.22293 0.94568 0.99266 1.01042 1.21575 0.94356 1.00941 0.82953 0.95467 0.91218 0.91309 0.88233 0.92023 0.81566 0.78259 0.88761 0.88269 0.93243 0.90243 0.91436 0.98822 0.96050 0.96283 0.94568 0.94030 0.92284 0.90238 0.89480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 9.90 71.98 0.71 -2.41 16 2 C -0.08 -1.68 5.94 29.85 0.18 -1.51 16 3 C -0.04 -0.80 5.16 -20.42 -0.11 -0.90 16 4 C -0.15 -2.45 9.96 21.08 0.21 -2.24 16 5 C -0.23 -3.10 10.92 66.81 0.73 -2.37 16 6 S 0.24 4.04 20.14 -56.49 -1.14 2.90 16 7 C -0.30 -7.58 5.38 24.08 0.13 -7.45 16 8 C 0.59 18.34 7.18 86.42 0.62 18.96 16 9 O -0.57 -21.33 15.11 -4.37 -0.07 -21.40 16 10 N -0.60 -17.42 2.97 -823.70 -2.45 -19.86 16 11 C 0.10 2.59 5.93 86.36 0.51 3.10 16 12 C -0.13 -4.15 5.32 30.67 0.16 -3.98 16 13 C 0.17 6.68 2.55 45.02 0.11 6.80 16 14 N -0.61 -30.01 2.82 -702.65 -1.98 -31.99 16 15 C 0.19 9.52 8.01 127.77 1.02 10.54 16 16 C -0.26 -13.79 9.68 84.03 0.81 -12.98 16 17 H 0.08 3.97 7.76 -2.91 -0.02 3.94 16 18 C -0.06 -3.23 5.16 84.86 0.44 -2.80 16 19 N -0.94 -56.23 10.30 21.65 0.22 -56.01 16 20 Si 0.97 44.73 29.57 68.60 2.03 46.76 16 21 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 22 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 23 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 24 C -0.13 -4.80 5.34 30.68 0.16 -4.63 16 25 C 0.12 3.80 6.42 86.36 0.55 4.35 16 26 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.10 1.65 8.12 -2.38 -0.02 1.63 16 30 H 0.06 1.72 6.65 -2.39 -0.02 1.71 16 31 H 0.17 1.82 8.06 -2.91 -0.02 1.80 16 32 H 0.20 1.37 8.06 -2.91 -0.02 1.34 16 33 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.10 2.16 4.17 -13.84 -0.06 2.10 16 35 H 0.05 1.69 6.72 -2.39 -0.02 1.67 16 36 H 0.08 2.46 8.14 -2.38 -0.02 2.44 16 37 H 0.07 2.52 7.83 -2.39 -0.02 2.50 16 38 H -0.01 -0.37 7.49 -2.39 -0.02 -0.39 16 39 H 0.02 1.16 6.92 -2.39 -0.02 1.15 16 40 H 0.02 0.84 6.47 -2.39 -0.02 0.83 16 41 H 0.25 14.31 8.31 -92.70 -0.77 13.54 16 42 H 0.04 1.65 7.72 -2.39 -0.02 1.63 16 43 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 44 H 0.08 2.58 7.03 -2.39 -0.02 2.56 16 45 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -68.98 363.38 3.81 -65.18 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: 0.93 Total: 11.92 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: 6.26 Total: 2.50 kcal Atomic # 7 Polarization: -103.65 SS G_CDS: -4.21 Total: -107.86 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -0.07 Total: -21.40 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Atomic # 16 Polarization: 4.04 SS G_CDS: -1.14 Total: 2.90 kcal Total: -68.98 3.81 -65.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985805858.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.412 kcal (2) G-P(sol) polarization free energy of solvation -68.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds