Wall clock time and date at job start Tue Mar 31 2020 13:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47151 * 2 1 4 4 C 1.50701 * 109.46941 * 180.02562 * 3 2 1 5 5 C 1.33811 * 124.52587 * 89.72339 * 4 3 2 6 6 C 1.37476 * 115.10132 * 179.85404 * 5 4 3 7 7 C 1.36649 * 113.29850 * 0.41850 * 6 5 4 8 8 C 1.46577 * 125.45981 * 179.79160 * 7 6 5 9 9 O 1.21704 * 119.99802 * 6.24742 * 8 7 6 10 10 N 1.34774 * 120.00140 * 186.24254 * 8 7 6 11 11 C 1.47429 * 125.65001 * 5.31473 * 10 8 7 12 12 C 1.55123 * 104.72547 * 155.81588 * 11 10 8 13 13 C 1.55158 * 101.48645 * 37.29705 * 12 11 10 14 14 H 1.08998 * 110.72193 * 205.97082 * 13 12 11 15 15 N 1.46504 * 110.71690 * 82.69507 * 13 12 11 16 16 C 1.36931 * 119.99988 * 91.48470 * 15 13 12 17 17 H 1.08005 * 120.00173 * 359.97438 * 16 15 13 18 18 C 1.38810 * 120.00026 * 180.02562 * 16 15 13 19 19 N 1.31614 * 120.00239 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00011 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47304 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.46977 * 119.99523 * 20 18 16 23 23 H 1.48500 * 109.47455 * 239.99653 * 20 18 16 24 24 C 1.47021 * 125.64996 * 185.62507 * 10 8 7 25 25 H 1.08997 * 109.88285 * 300.59079 * 24 10 8 26 26 C 1.52994 * 109.88407 * 61.60451 * 24 10 8 27 27 S 1.70626 * 124.51971 * 270.02055 * 4 3 2 28 28 H 1.08999 * 109.47374 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47113 * 300.00181 * 1 2 3 30 30 H 1.09003 * 109.47394 * 59.99327 * 1 2 3 31 31 H 1.09002 * 109.46850 * 240.00293 * 2 1 3 32 32 H 1.08994 * 109.47263 * 120.00442 * 2 1 3 33 33 H 1.08999 * 109.47228 * 299.99905 * 3 2 1 34 34 H 1.08993 * 109.47105 * 60.00345 * 3 2 1 35 35 H 1.08003 * 122.44908 * 0.02562 * 5 4 3 36 36 H 1.08002 * 123.35231 * 180.21864 * 6 5 4 37 37 H 1.08999 * 110.36493 * 274.75215 * 11 10 8 38 38 H 1.09002 * 110.36261 * 37.07013 * 11 10 8 39 39 H 1.09006 * 111.19316 * 279.19738 * 12 11 10 40 40 H 1.08999 * 110.94061 * 155.29115 * 12 11 10 41 41 H 0.97004 * 119.99439 * 271.47785 * 15 13 12 42 42 H 0.97002 * 120.00334 * 180.02562 * 19 18 16 43 43 H 1.09007 * 109.46957 * 58.55040 * 26 24 10 44 44 H 1.09005 * 109.47342 * 178.54228 * 26 24 10 45 45 H 1.09000 * 109.47430 * 298.54747 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 -0.0006 5 6 4.3049 1.4372 -1.1034 6 6 5.6612 1.4414 -0.8788 7 6 5.9895 1.4411 0.4476 8 6 7.3527 1.4406 0.9863 9 8 8.3037 1.5552 0.2355 10 7 7.5530 1.3133 2.3130 11 6 6.5065 1.0573 3.3193 12 6 7.2543 0.3950 4.5061 13 6 8.5954 1.1754 4.5005 14 1 9.3932 0.5743 4.9367 15 7 8.4567 2.4493 5.2105 16 6 8.7343 2.5206 6.5495 17 1 9.0551 1.6376 7.0823 18 6 8.6024 3.7275 7.2224 19 7 8.2109 4.8035 6.5733 20 14 8.9804 3.8246 9.0492 21 1 9.3973 2.4866 9.5402 22 1 10.0773 4.7996 9.2765 23 1 7.7669 4.2648 9.7832 24 6 8.8505 1.4132 2.9971 25 1 9.5327 0.6562 2.6104 26 6 9.4451 2.8067 2.7843 27 16 4.5145 1.4417 1.4048 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.8821 1.4330 -2.0972 36 1 6.3944 1.4415 -1.6719 37 1 6.0452 1.9936 3.6335 38 1 5.7537 0.3780 2.9193 39 1 7.4196 -0.6670 4.3244 40 1 6.7160 0.5502 5.4411 41 1 8.1682 3.2423 4.7320 42 1 8.1191 5.6470 7.0434 43 1 8.7545 3.5586 3.1662 44 1 10.3940 2.8819 3.3154 45 1 9.6104 2.9725 1.7197 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986311840.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:28 Heat of formation + Delta-G solvation = 3.275579 kcal Electronic energy + Delta-G solvation = -25053.709462 eV Core-core repulsion = 21583.802690 eV Total energy + Delta-G solvation = -3469.906772 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.98619 -38.37123 -37.19661 -35.05691 -34.02852 -31.81146 -30.91558 -30.33083 -28.93563 -26.83026 -25.31703 -24.05594 -23.57816 -22.56452 -21.71832 -20.86187 -19.11654 -18.37681 -17.81380 -17.27333 -16.18917 -15.99147 -15.45514 -15.12622 -14.76851 -14.35819 -14.11134 -13.90205 -13.79808 -13.42627 -13.28927 -12.91807 -12.76882 -12.70690 -12.40986 -12.34939 -11.95846 -11.79177 -11.66476 -11.48522 -11.43430 -11.13166 -11.03432 -10.96254 -10.86655 -10.69561 -10.48266 -10.21960 -10.04675 -9.71088 -9.63667 -8.99722 -8.75517 -8.57376 -8.27479 -7.06187 -5.84331 -3.14223 0.52739 1.47771 1.92151 2.38670 3.18847 3.38387 3.38941 3.45114 3.47189 4.42823 4.52198 4.64684 4.68101 4.73961 4.98868 5.05478 5.18860 5.25806 5.29794 5.39072 5.40975 5.47485 5.50897 5.54708 5.60130 5.70395 5.73614 5.78373 5.79929 5.93668 5.94810 5.97122 6.06269 6.16316 6.29307 6.34447 6.39249 6.48288 6.58716 6.68460 6.84545 7.00167 7.64574 7.76088 8.32934 8.34969 9.45486 9.99970 10.35170 11.37805 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015780 B = 0.003275 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.973233 B = 8547.309361 C = 9616.640421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.051 4.051 4 C -0.217 4.217 5 C -0.154 4.154 6 C -0.060 4.060 7 C -0.260 4.260 8 C 0.601 3.399 9 O -0.538 6.538 10 N -0.604 5.604 11 C 0.093 3.907 12 C -0.154 4.154 13 C 0.172 3.828 14 H 0.073 0.927 15 N -0.713 5.713 16 C -0.244 4.244 17 H 0.073 0.927 18 C -0.010 4.010 19 N -0.929 5.929 20 Si 0.907 3.093 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.292 1.292 24 C 0.128 3.872 25 H 0.073 0.927 26 C -0.149 4.149 27 S 0.229 5.771 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.137 0.863 36 H 0.149 0.851 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.090 0.910 41 H 0.388 0.612 42 H 0.256 0.744 43 H 0.066 0.934 44 H 0.069 0.931 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.809 -9.771 -13.273 20.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.090 4.090 4 C -0.336 4.336 5 C -0.185 4.185 6 C -0.093 4.093 7 C -0.381 4.381 8 C 0.389 3.611 9 O -0.417 6.417 10 N -0.337 5.337 11 C -0.031 4.031 12 C -0.196 4.196 13 C 0.060 3.940 14 H 0.091 0.909 15 N -0.355 5.355 16 C -0.375 4.375 17 H 0.091 0.909 18 C -0.206 4.206 19 N -0.577 5.577 20 Si 0.738 3.262 21 H -0.205 1.205 22 H -0.219 1.219 23 H -0.219 1.219 24 C 0.024 3.976 25 H 0.091 0.909 26 C -0.208 4.208 27 S 0.498 5.502 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.155 0.845 36 H 0.167 0.833 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.109 0.891 41 H 0.225 0.775 42 H 0.066 0.934 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.577 -9.684 -11.993 19.895 hybrid contribution 0.191 0.460 -0.775 0.921 sum -12.386 -9.224 -12.768 20.038 Atomic orbital electron populations 1.21783 0.95389 1.01885 1.01968 1.21560 0.95862 0.95673 1.02725 1.20216 0.87449 0.97889 1.03403 1.24640 1.01387 1.07926 0.99670 1.19868 0.92548 1.06749 0.99333 1.20666 0.96080 0.97471 0.95095 1.24630 0.96989 1.18468 0.97983 1.16548 0.86705 0.76996 0.80827 1.90792 1.42124 1.51436 1.57389 1.48492 1.10315 1.69884 1.05016 1.22513 0.90471 1.00716 0.89410 1.23547 1.00224 0.98501 0.97289 1.21203 0.94695 0.89503 0.88597 0.90898 1.42575 1.80245 1.05478 1.07242 1.19279 1.38247 0.94915 0.85045 0.90926 1.24749 1.02019 0.95708 0.98122 1.69667 1.53046 0.99772 1.35214 0.86127 0.77474 0.77388 0.85206 1.20517 1.21874 1.21890 1.22049 0.83690 0.98463 0.93351 0.90855 1.21927 1.01780 0.96095 1.00960 1.83611 0.93537 1.67103 1.05924 0.92506 0.92520 0.92649 0.91603 0.91644 0.90118 0.90628 0.84478 0.83298 0.90374 0.91298 0.91755 0.89124 0.77506 0.93444 0.91480 0.91227 0.92886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.91 37.16 0.37 -0.55 16 2 C -0.12 -0.87 5.92 -26.73 -0.16 -1.03 16 3 C -0.05 -0.41 5.65 -27.88 -0.16 -0.57 16 4 C -0.22 -2.30 5.53 -35.86 -0.20 -2.50 16 5 C -0.15 -1.69 9.99 -41.41 -0.41 -2.10 16 6 C -0.06 -0.78 10.02 -40.43 -0.41 -1.19 16 7 C -0.26 -3.87 6.34 -36.80 -0.23 -4.10 16 8 C 0.60 10.63 7.55 -12.90 -0.10 10.53 16 9 O -0.54 -10.91 16.10 5.19 0.08 -10.83 16 10 N -0.60 -10.29 3.06 -164.44 -0.50 -10.79 16 11 C 0.09 1.43 5.26 -2.41 -0.01 1.42 16 12 C -0.15 -2.45 6.78 -24.47 -0.17 -2.62 16 13 C 0.17 3.21 3.48 -66.09 -0.23 2.98 16 14 H 0.07 1.34 8.09 -51.93 -0.42 0.92 16 15 N -0.71 -16.56 4.54 -51.65 -0.23 -16.79 16 16 C -0.24 -6.32 9.96 -15.06 -0.15 -6.47 16 17 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 18 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 19 N -0.93 -26.96 13.06 55.49 0.72 -26.24 16 20 Si 0.91 21.55 29.55 -169.99 -5.02 16.53 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 C 0.13 2.28 3.40 -66.95 -0.23 2.05 16 25 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 26 C -0.15 -2.87 8.51 37.15 0.32 -2.55 16 27 S 0.23 2.78 18.62 -107.50 -2.00 0.78 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.14 1.18 8.06 -52.48 -0.42 0.76 16 36 H 0.15 1.87 8.06 -52.49 -0.42 1.44 16 37 H 0.08 1.30 7.95 -51.93 -0.41 0.89 16 38 H 0.07 0.91 5.74 -38.74 -0.22 0.69 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 41 H 0.39 9.75 5.67 -40.82 -0.23 9.52 16 42 H 0.26 7.22 8.31 -40.82 -0.34 6.89 16 43 H 0.07 1.42 6.20 -51.93 -0.32 1.10 16 44 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 45 H 0.05 1.02 7.07 -51.93 -0.37 0.65 16 LS Contribution 372.61 15.07 5.62 5.62 Total: -1.00 -30.10 372.61 -10.22 -40.32 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -7.02 Total: 8.46 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: -1.86 Total: -7.05 kcal Atomic # 7 Polarization: -53.81 SS G_CDS: -0.01 Total: -53.82 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.08 Total: -10.83 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: 2.78 SS G_CDS: -2.00 Total: 0.78 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.10 -10.22 -40.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986311840.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.595 kcal (2) G-P(sol) polarization free energy of solvation -30.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds