Wall clock time and date at job start Tue Mar 31 2020 13:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47151 * 2 1 4 4 C 1.50701 * 109.46941 * 180.02562 * 3 2 1 5 5 C 1.33811 * 124.52587 * 89.72339 * 4 3 2 6 6 C 1.37476 * 115.10132 * 179.85404 * 5 4 3 7 7 C 1.36649 * 113.29850 * 0.41850 * 6 5 4 8 8 C 1.46577 * 125.45981 * 179.79160 * 7 6 5 9 9 O 1.21704 * 119.99802 * 6.24742 * 8 7 6 10 10 N 1.34774 * 120.00140 * 186.24254 * 8 7 6 11 11 C 1.47429 * 125.65001 * 5.31473 * 10 8 7 12 12 C 1.55123 * 104.72547 * 155.81588 * 11 10 8 13 13 C 1.55158 * 101.48645 * 37.29705 * 12 11 10 14 14 H 1.08998 * 110.72193 * 205.97082 * 13 12 11 15 15 N 1.46504 * 110.71690 * 82.69507 * 13 12 11 16 16 C 1.36931 * 119.99988 * 91.48470 * 15 13 12 17 17 H 1.08005 * 120.00173 * 359.97438 * 16 15 13 18 18 C 1.38810 * 120.00026 * 180.02562 * 16 15 13 19 19 N 1.31614 * 120.00239 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00011 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47304 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.46977 * 119.99523 * 20 18 16 23 23 H 1.48500 * 109.47455 * 239.99653 * 20 18 16 24 24 C 1.47021 * 125.64996 * 185.62507 * 10 8 7 25 25 H 1.08997 * 109.88285 * 300.59079 * 24 10 8 26 26 C 1.52994 * 109.88407 * 61.60451 * 24 10 8 27 27 S 1.70626 * 124.51971 * 270.02055 * 4 3 2 28 28 H 1.08999 * 109.47374 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47113 * 300.00181 * 1 2 3 30 30 H 1.09003 * 109.47394 * 59.99327 * 1 2 3 31 31 H 1.09002 * 109.46850 * 240.00293 * 2 1 3 32 32 H 1.08994 * 109.47263 * 120.00442 * 2 1 3 33 33 H 1.08999 * 109.47228 * 299.99905 * 3 2 1 34 34 H 1.08993 * 109.47105 * 60.00345 * 3 2 1 35 35 H 1.08003 * 122.44908 * 0.02562 * 5 4 3 36 36 H 1.08002 * 123.35231 * 180.21864 * 6 5 4 37 37 H 1.08999 * 110.36493 * 274.75215 * 11 10 8 38 38 H 1.09002 * 110.36261 * 37.07013 * 11 10 8 39 39 H 1.09006 * 111.19316 * 279.19738 * 12 11 10 40 40 H 1.08999 * 110.94061 * 155.29115 * 12 11 10 41 41 H 0.97004 * 119.99439 * 271.47785 * 15 13 12 42 42 H 0.97002 * 120.00334 * 180.02562 * 19 18 16 43 43 H 1.09007 * 109.46957 * 58.55040 * 26 24 10 44 44 H 1.09005 * 109.47342 * 178.54228 * 26 24 10 45 45 H 1.09000 * 109.47430 * 298.54747 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 -0.0006 5 6 4.3049 1.4372 -1.1034 6 6 5.6612 1.4414 -0.8788 7 6 5.9895 1.4411 0.4476 8 6 7.3527 1.4406 0.9863 9 8 8.3037 1.5552 0.2355 10 7 7.5530 1.3133 2.3130 11 6 6.5065 1.0573 3.3193 12 6 7.2543 0.3950 4.5061 13 6 8.5954 1.1754 4.5005 14 1 9.3932 0.5743 4.9367 15 7 8.4567 2.4493 5.2105 16 6 8.7343 2.5206 6.5495 17 1 9.0551 1.6376 7.0823 18 6 8.6024 3.7275 7.2224 19 7 8.2109 4.8035 6.5733 20 14 8.9804 3.8246 9.0492 21 1 9.3973 2.4866 9.5402 22 1 10.0773 4.7996 9.2765 23 1 7.7669 4.2648 9.7832 24 6 8.8505 1.4132 2.9971 25 1 9.5327 0.6562 2.6104 26 6 9.4451 2.8067 2.7843 27 16 4.5145 1.4417 1.4048 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.8821 1.4330 -2.0972 36 1 6.3944 1.4415 -1.6719 37 1 6.0452 1.9936 3.6335 38 1 5.7537 0.3780 2.9193 39 1 7.4196 -0.6670 4.3244 40 1 6.7160 0.5502 5.4411 41 1 8.1682 3.2423 4.7320 42 1 8.1191 5.6470 7.0434 43 1 8.7545 3.5586 3.1662 44 1 10.3940 2.8819 3.3154 45 1 9.6104 2.9725 1.7197 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986311840.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:27 Heat of formation + Delta-G solvation = -12.786912 kcal Electronic energy + Delta-G solvation = -25054.405984 eV Core-core repulsion = 21583.802690 eV Total energy + Delta-G solvation = -3470.603294 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.36461 -39.45704 -38.47139 -35.80387 -35.73987 -33.49053 -32.36866 -31.38648 -30.44979 -27.77511 -26.85896 -25.54391 -24.89720 -23.77637 -22.33446 -22.11046 -20.54976 -19.49551 -19.38269 -18.79458 -17.60799 -17.00604 -16.65716 -16.43722 -15.85661 -15.74184 -15.56964 -15.23034 -14.82217 -14.72461 -14.30903 -14.28151 -14.03854 -13.92651 -13.60995 -13.35533 -13.21872 -13.04159 -12.88318 -12.71687 -12.58586 -12.54438 -12.33058 -12.31242 -12.06011 -11.99438 -11.81328 -11.63492 -11.48622 -11.34838 -11.09883 -10.92031 -9.93123 -9.55456 -9.45931 -8.99362 -7.90461 -5.19000 -0.49522 0.48383 0.96800 1.38156 1.50945 1.52216 1.61229 1.87151 2.14288 2.59018 3.36101 3.47139 3.66934 3.72439 3.86431 3.97053 4.07332 4.17146 4.18501 4.23949 4.31511 4.34229 4.43203 4.48612 4.60535 4.63969 4.73596 4.78232 4.85669 4.87561 4.98103 5.01386 5.04267 5.15000 5.16092 5.23364 5.30202 5.30741 5.33172 5.42411 5.44852 5.47792 5.59153 6.30466 6.42006 6.98888 7.38151 8.10368 8.34715 9.32944 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015780 B = 0.003275 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.973233 B = 8547.309361 C = 9616.640421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.052 4.052 4 C -0.198 4.198 5 C -0.160 4.160 6 C -0.052 4.052 7 C -0.302 4.302 8 C 0.597 3.403 9 O -0.575 6.575 10 N -0.605 5.605 11 C 0.097 3.903 12 C -0.142 4.142 13 C 0.166 3.834 14 H 0.081 0.919 15 N -0.724 5.724 16 C -0.232 4.232 17 H 0.083 0.917 18 C -0.073 4.073 19 N -0.969 5.969 20 Si 0.969 3.031 21 H -0.263 1.263 22 H -0.301 1.301 23 H -0.297 1.297 24 C 0.131 3.869 25 H 0.085 0.915 26 C -0.136 4.136 27 S 0.234 5.766 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.165 0.835 36 H 0.149 0.851 37 H 0.062 0.938 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.083 0.917 41 H 0.376 0.624 42 H 0.248 0.752 43 H 0.041 0.959 44 H 0.064 0.936 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.670 -11.636 -13.754 23.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.091 4.091 4 C -0.318 4.318 5 C -0.189 4.189 6 C -0.086 4.086 7 C -0.422 4.422 8 C 0.387 3.613 9 O -0.457 6.457 10 N -0.338 5.338 11 C -0.026 4.026 12 C -0.182 4.182 13 C 0.055 3.945 14 H 0.099 0.901 15 N -0.365 5.365 16 C -0.364 4.364 17 H 0.101 0.899 18 C -0.265 4.265 19 N -0.620 5.620 20 Si 0.799 3.201 21 H -0.188 1.188 22 H -0.228 1.228 23 H -0.224 1.224 24 C 0.028 3.972 25 H 0.103 0.897 26 C -0.195 4.195 27 S 0.504 5.496 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.116 0.884 34 H 0.099 0.901 35 H 0.183 0.817 36 H 0.167 0.833 37 H 0.081 0.919 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.101 0.899 41 H 0.211 0.789 42 H 0.057 0.943 43 H 0.060 0.940 44 H 0.083 0.917 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -14.444 -11.619 -12.466 22.339 hybrid contribution 0.703 0.981 -0.752 1.422 sum -13.741 -10.638 -13.219 21.834 Atomic orbital electron populations 1.21770 0.94353 1.02338 1.02402 1.21541 0.96726 0.94824 1.02510 1.20372 0.85376 0.98808 1.04533 1.25006 1.02644 1.05493 0.98655 1.20076 0.91445 1.06639 1.00779 1.20898 0.97306 0.95884 0.94502 1.24452 0.96548 1.22011 0.99148 1.16970 0.87642 0.76063 0.80589 1.90754 1.43607 1.53232 1.58141 1.48508 1.10200 1.69807 1.05246 1.22529 0.90569 1.00560 0.88965 1.23417 0.97904 0.99781 0.97148 1.21409 0.96511 0.88051 0.88490 0.90067 1.42699 1.80315 1.06797 1.06691 1.19666 1.35722 0.94837 0.86152 0.89926 1.25480 1.03422 0.95746 1.01899 1.69825 1.55565 1.00080 1.36522 0.85137 0.76503 0.77623 0.80848 1.18765 1.22848 1.22448 1.21929 0.84554 0.97623 0.93114 0.89724 1.21766 1.00941 0.96578 1.00207 1.83480 0.92519 1.67142 1.06500 0.92099 0.92434 0.91898 0.91470 0.92281 0.88382 0.90131 0.81708 0.83340 0.91944 0.88723 0.88680 0.89859 0.78910 0.94267 0.93957 0.91715 0.93405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.91 71.98 0.71 -0.69 16 2 C -0.12 -1.37 5.92 30.59 0.18 -1.19 16 3 C -0.05 -0.68 5.65 29.85 0.17 -0.51 16 4 C -0.20 -3.71 5.53 24.68 0.14 -3.57 16 5 C -0.16 -3.09 9.99 21.08 0.21 -2.88 16 6 C -0.05 -1.29 10.02 21.72 0.22 -1.08 16 7 C -0.30 -8.80 6.34 24.07 0.15 -8.65 16 8 C 0.60 21.26 7.55 86.42 0.65 21.91 16 9 O -0.57 -23.81 16.10 -4.36 -0.07 -23.88 16 10 N -0.61 -20.51 3.06 -792.39 -2.43 -22.94 16 11 C 0.10 2.90 5.26 86.93 0.46 3.35 16 12 C -0.14 -4.25 6.78 32.06 0.22 -4.04 16 13 C 0.17 6.04 3.48 46.18 0.16 6.20 16 14 H 0.08 2.85 8.09 -2.39 -0.02 2.83 16 15 N -0.72 -33.85 4.54 -317.31 -1.44 -35.29 16 16 C -0.23 -11.97 9.96 84.03 0.84 -11.13 16 17 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 18 C -0.07 -4.02 5.50 84.86 0.47 -3.56 16 19 N -0.97 -57.68 13.06 21.65 0.28 -57.40 16 20 Si 0.97 44.63 29.55 68.60 2.03 46.66 16 21 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 22 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 23 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 24 C 0.13 4.68 3.40 45.34 0.15 4.83 16 25 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 26 C -0.14 -5.42 8.51 71.98 0.61 -4.81 16 27 S 0.23 5.35 18.62 -56.49 -1.05 4.30 16 28 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 30 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.17 2.26 8.06 -2.91 -0.02 2.23 16 36 H 0.15 3.65 8.06 -2.91 -0.02 3.63 16 37 H 0.06 2.08 7.95 -2.39 -0.02 2.06 16 38 H 0.10 2.34 5.74 -10.77 -0.06 2.28 16 39 H 0.09 2.31 8.14 -2.38 -0.02 2.29 16 40 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 41 H 0.38 19.46 5.67 -92.71 -0.53 18.94 16 42 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 43 H 0.04 1.87 6.20 -2.38 -0.01 1.86 16 44 H 0.06 2.57 8.14 -2.38 -0.02 2.55 16 45 H 0.05 1.91 7.07 -2.39 -0.02 1.89 16 Total: -1.00 -65.75 372.61 3.07 -62.68 By element: Atomic # 1 Polarization: 31.25 SS G_CDS: 0.41 Total: 31.66 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: 5.34 Total: -5.79 kcal Atomic # 7 Polarization: -112.04 SS G_CDS: -3.59 Total: -115.63 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: -0.07 Total: -23.88 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Atomic # 16 Polarization: 5.35 SS G_CDS: -1.05 Total: 4.30 kcal Total: -65.75 3.07 -62.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986311840.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.898 kcal (2) G-P(sol) polarization free energy of solvation -65.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds