Wall clock time and date at job start Tue Mar 31 2020 13:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46611 * 2 1 4 4 C 1.50698 * 109.46805 * 180.02562 * 3 2 1 5 5 C 1.33817 * 124.52774 * 90.00030 * 4 3 2 6 6 C 1.37475 * 115.10128 * 179.70337 * 5 4 3 7 7 C 1.36642 * 113.29575 * 0.49489 * 6 5 4 8 8 C 1.46589 * 125.45530 * 179.80302 * 7 6 5 9 9 O 1.21705 * 120.00052 * 353.76427 * 8 7 6 10 10 N 1.34773 * 119.99801 * 173.77027 * 8 7 6 11 11 C 1.47423 * 125.65192 * 354.41576 * 10 8 7 12 12 C 1.54909 * 104.83460 * 204.09626 * 11 10 8 13 13 C 1.55157 * 101.57866 * 322.98648 * 12 11 10 14 14 H 1.09004 * 110.87259 * 153.93327 * 13 12 11 15 15 N 1.46498 * 110.72269 * 277.13859 * 13 12 11 16 16 C 1.36935 * 120.00137 * 268.52039 * 15 13 12 17 17 H 1.07998 * 119.99796 * 0.02562 * 16 15 13 18 18 C 1.38812 * 119.99868 * 179.97438 * 16 15 13 19 19 N 1.31614 * 119.99969 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99572 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46826 * 269.99777 * 20 18 16 22 22 H 1.48505 * 109.46701 * 150.00369 * 20 18 16 23 23 H 1.48496 * 109.47430 * 30.00158 * 20 18 16 24 24 C 1.47025 * 125.64670 * 174.37655 * 10 8 7 25 25 H 1.08994 * 110.01141 * 59.48048 * 24 10 8 26 26 C 1.53002 * 109.87972 * 298.39225 * 24 10 8 27 27 S 1.70625 * 124.52190 * 269.97188 * 4 3 2 28 28 H 1.09000 * 109.47388 * 299.99631 * 1 2 3 29 29 H 1.09000 * 109.47288 * 60.00440 * 1 2 3 30 30 H 1.09003 * 109.47056 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46901 * 240.00466 * 2 1 3 32 32 H 1.08994 * 109.47416 * 119.99982 * 2 1 3 33 33 H 1.09001 * 109.47443 * 59.99935 * 3 2 1 34 34 H 1.09006 * 109.47337 * 299.99758 * 3 2 1 35 35 H 1.07998 * 122.44608 * 359.95533 * 5 4 3 36 36 H 1.07997 * 123.34881 * 180.29602 * 6 5 4 37 37 H 1.09007 * 110.36625 * 322.93107 * 11 10 8 38 38 H 1.09000 * 110.36792 * 85.25440 * 11 10 8 39 39 H 1.08998 * 111.00428 * 204.91392 * 12 11 10 40 40 H 1.09002 * 111.00581 * 81.06261 * 12 11 10 41 41 H 0.97000 * 119.99737 * 88.52471 * 15 13 12 42 42 H 0.96989 * 120.00462 * 359.97438 * 19 18 16 43 43 H 1.09005 * 109.46833 * 302.18713 * 26 24 10 44 44 H 1.09001 * 109.47365 * 62.19368 * 26 24 10 45 45 H 1.09006 * 109.47079 * 182.19185 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4426 -0.0006 5 6 4.3049 1.4428 -1.1034 6 6 5.6612 1.4492 -0.8788 7 6 5.9893 1.4435 0.4476 8 6 7.3526 1.4441 0.9863 9 8 8.3039 1.3356 0.2349 10 7 7.5526 1.5647 2.3136 11 6 6.5063 1.8186 3.3207 12 6 7.2520 2.4707 4.5116 13 6 8.5947 1.6932 4.5018 14 1 9.3929 2.2910 4.9419 15 7 8.4588 0.4153 5.2050 16 6 8.7366 0.3374 6.5437 17 1 9.0554 1.2183 7.0810 18 6 8.6073 -0.8734 7.2101 19 7 8.2182 -1.9467 6.5552 20 14 8.9856 -0.9793 9.0364 21 1 10.4204 -1.3117 9.2261 22 1 8.1464 -2.0367 9.6551 23 1 8.6907 0.3263 9.6795 24 6 8.8504 1.4640 2.9972 25 1 9.5322 2.2246 2.6170 26 6 9.4480 0.0729 2.7769 27 16 4.5144 1.4431 1.4048 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6765 1.9564 0.8900 34 1 1.6765 1.9564 -0.8900 35 1 3.8820 1.4422 -2.0972 36 1 6.3942 1.4549 -1.6719 37 1 5.7553 2.5016 2.9235 38 1 6.0426 0.8820 3.6304 39 1 6.7137 2.3090 5.4454 40 1 7.4149 3.5340 4.3356 41 1 8.1721 -0.3758 4.7224 42 1 8.0214 -1.8916 5.6071 43 1 8.7532 -0.6831 3.1430 44 1 9.6258 -0.0819 1.7127 45 1 10.3907 -0.0075 3.3183 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986311842.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:32 Heat of formation + Delta-G solvation = 3.511385 kcal Electronic energy + Delta-G solvation = -25124.638664 eV Core-core repulsion = 21654.742117 eV Total energy + Delta-G solvation = -3469.896547 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.07606 -38.43531 -37.28558 -35.07767 -34.31716 -31.90882 -31.01082 -30.34951 -28.75882 -26.84851 -25.32466 -24.07672 -23.49865 -22.63630 -21.72837 -20.97776 -19.28041 -18.43095 -17.89143 -17.40932 -16.21562 -16.08074 -15.55097 -15.16856 -14.98597 -14.46787 -14.18726 -13.94380 -13.72011 -13.54411 -13.42591 -12.92457 -12.81447 -12.78961 -12.53493 -12.45088 -12.00077 -11.85140 -11.69615 -11.49965 -11.44332 -11.28722 -11.16277 -11.04876 -10.79160 -10.53886 -10.28917 -10.25037 -10.02205 -9.78789 -9.25100 -8.99719 -8.81277 -8.62980 -8.35634 -7.13449 -6.16667 -3.18316 0.47315 1.42354 1.86873 2.33464 3.10516 3.31391 3.48602 3.52728 3.66662 4.40362 4.58391 4.62273 4.64891 4.73219 4.91197 5.03261 5.16955 5.18957 5.25700 5.30725 5.38329 5.42039 5.46517 5.48163 5.59790 5.60518 5.69050 5.74167 5.78177 5.79758 5.90313 5.95734 5.98855 6.10181 6.19382 6.27815 6.29658 6.36882 6.49036 6.59412 6.73475 6.84281 7.67686 7.75005 8.26746 8.68299 9.13122 9.99666 10.14087 11.30770 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014408 B = 0.003415 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.908393 B = 8198.244450 C = 9438.550547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.050 4.050 4 C -0.215 4.215 5 C -0.155 4.155 6 C -0.058 4.058 7 C -0.262 4.262 8 C 0.601 3.399 9 O -0.537 6.537 10 N -0.605 5.605 11 C 0.093 3.907 12 C -0.154 4.154 13 C 0.178 3.822 14 H 0.074 0.926 15 N -0.725 5.725 16 C -0.336 4.336 17 H 0.067 0.933 18 C -0.041 4.041 19 N -0.940 5.940 20 Si 1.082 2.918 21 H -0.295 1.295 22 H -0.288 1.288 23 H -0.294 1.294 24 C 0.127 3.873 25 H 0.075 0.925 26 C -0.148 4.148 27 S 0.227 5.773 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.138 0.862 36 H 0.150 0.850 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.090 0.910 40 H 0.065 0.935 41 H 0.371 0.629 42 H 0.255 0.745 43 H 0.060 0.940 44 H 0.055 0.945 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.769 8.835 -13.161 20.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.089 4.089 4 C -0.335 4.335 5 C -0.185 4.185 6 C -0.092 4.092 7 C -0.382 4.382 8 C 0.390 3.610 9 O -0.416 6.416 10 N -0.338 5.338 11 C -0.031 4.031 12 C -0.195 4.195 13 C 0.066 3.934 14 H 0.092 0.908 15 N -0.368 5.368 16 C -0.466 4.466 17 H 0.085 0.915 18 C -0.239 4.239 19 N -0.585 5.585 20 Si 0.913 3.087 21 H -0.223 1.223 22 H -0.214 1.214 23 H -0.221 1.221 24 C 0.023 3.977 25 H 0.093 0.907 26 C -0.206 4.206 27 S 0.496 5.504 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.156 0.844 36 H 0.167 0.833 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.109 0.891 40 H 0.084 0.916 41 H 0.207 0.793 42 H 0.066 0.934 43 H 0.078 0.922 44 H 0.074 0.926 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.462 7.895 -10.608 18.171 hybrid contribution -0.008 0.830 -3.118 3.227 sum -12.470 8.726 -13.726 20.495 Atomic orbital electron populations 1.21778 0.95338 1.01984 1.01872 1.21570 0.95907 0.95584 1.02902 1.20218 0.87363 0.98004 1.03298 1.24648 1.01430 1.07775 0.99599 1.19877 0.92528 1.06727 0.99370 1.20672 0.96109 0.97304 0.95074 1.24609 0.96932 1.18675 0.98007 1.16563 0.86757 0.76938 0.80774 1.90795 1.42115 1.51373 1.57342 1.48488 1.10215 1.70102 1.05000 1.22461 0.90529 1.00663 0.89431 1.23496 1.00142 0.98658 0.97223 1.21137 0.94775 0.89104 0.88390 0.90788 1.42561 1.81346 1.05223 1.07654 1.20064 1.43503 0.97555 0.85506 0.91517 1.25768 1.00171 0.91597 1.06391 1.70855 1.48266 1.29388 1.09995 0.83199 0.76198 0.74968 0.74310 1.22301 1.21428 1.22109 1.22055 0.83804 0.98405 0.93420 0.90685 1.21916 1.01551 0.95983 1.01184 1.83601 0.93564 1.67204 1.06015 0.92549 0.92680 0.92424 0.91547 0.91526 0.90686 0.90125 0.84405 0.83262 0.91128 0.90644 0.89099 0.91641 0.79291 0.93384 0.92158 0.92625 0.91156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.91 37.16 0.37 -0.61 16 2 C -0.12 -0.95 5.92 -26.73 -0.16 -1.11 16 3 C -0.05 -0.40 5.65 -27.88 -0.16 -0.56 16 4 C -0.22 -2.26 5.53 -35.86 -0.20 -2.46 16 5 C -0.15 -1.67 10.00 -41.41 -0.41 -2.08 16 6 C -0.06 -0.76 10.02 -40.44 -0.41 -1.16 16 7 C -0.26 -3.86 6.34 -36.79 -0.23 -4.09 16 8 C 0.60 10.56 7.55 -12.89 -0.10 10.47 16 9 O -0.54 -10.82 16.11 5.18 0.08 -10.73 16 10 N -0.60 -10.25 3.06 -164.57 -0.50 -10.75 16 11 C 0.09 1.43 5.25 -2.53 -0.01 1.42 16 12 C -0.15 -2.48 6.77 -24.58 -0.17 -2.64 16 13 C 0.18 3.36 3.48 -66.10 -0.23 3.13 16 14 H 0.07 1.40 8.09 -51.93 -0.42 0.98 16 15 N -0.72 -16.89 4.55 -51.65 -0.23 -17.12 16 16 C -0.34 -8.85 9.96 -15.06 -0.15 -9.00 16 17 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 18 C -0.04 -1.15 5.50 -17.43 -0.10 -1.24 16 19 N -0.94 -28.14 13.70 55.49 0.76 -27.38 16 20 Si 1.08 25.09 29.92 -169.99 -5.09 20.00 16 21 H -0.30 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 24 C 0.13 2.26 3.40 -66.95 -0.23 2.03 16 25 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 26 C -0.15 -2.82 8.48 37.16 0.32 -2.50 16 27 S 0.23 2.73 18.62 -107.50 -2.00 0.73 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 36 H 0.15 1.85 8.06 -52.49 -0.42 1.43 16 37 H 0.07 0.94 5.75 -38.85 -0.22 0.71 16 38 H 0.08 1.25 7.95 -51.93 -0.41 0.83 16 39 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.37 9.11 4.52 -40.82 -0.18 8.93 16 42 H 0.25 7.56 6.77 -40.82 -0.28 7.28 16 43 H 0.06 1.24 6.24 -51.93 -0.32 0.92 16 44 H 0.05 1.06 7.09 -51.93 -0.37 0.69 16 45 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 370.95 15.07 5.59 5.59 Total: -1.00 -31.09 370.95 -10.17 -41.26 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -6.91 Total: 8.82 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: -1.86 Total: -10.41 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: 0.02 Total: -55.26 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.08 Total: -10.73 kcal Atomic # 14 Polarization: 25.09 SS G_CDS: -5.09 Total: 20.00 kcal Atomic # 16 Polarization: 2.73 SS G_CDS: -2.00 Total: 0.73 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.09 -10.17 -41.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986311842.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.773 kcal (2) G-P(sol) polarization free energy of solvation -31.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds