Wall clock time and date at job start Tue Mar 31 2020 13:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46611 * 2 1 4 4 C 1.50698 * 109.46805 * 180.02562 * 3 2 1 5 5 C 1.33817 * 124.52774 * 90.00030 * 4 3 2 6 6 C 1.37475 * 115.10128 * 179.70337 * 5 4 3 7 7 C 1.36642 * 113.29575 * 0.49489 * 6 5 4 8 8 C 1.46589 * 125.45530 * 179.80302 * 7 6 5 9 9 O 1.21705 * 120.00052 * 353.76427 * 8 7 6 10 10 N 1.34773 * 119.99801 * 173.77027 * 8 7 6 11 11 C 1.47423 * 125.65192 * 354.41576 * 10 8 7 12 12 C 1.54909 * 104.83460 * 204.09626 * 11 10 8 13 13 C 1.55157 * 101.57866 * 322.98648 * 12 11 10 14 14 H 1.09004 * 110.87259 * 153.93327 * 13 12 11 15 15 N 1.46498 * 110.72269 * 277.13859 * 13 12 11 16 16 C 1.36935 * 120.00137 * 268.52039 * 15 13 12 17 17 H 1.07998 * 119.99796 * 0.02562 * 16 15 13 18 18 C 1.38812 * 119.99868 * 179.97438 * 16 15 13 19 19 N 1.31614 * 119.99969 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99572 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46826 * 269.99777 * 20 18 16 22 22 H 1.48505 * 109.46701 * 150.00369 * 20 18 16 23 23 H 1.48496 * 109.47430 * 30.00158 * 20 18 16 24 24 C 1.47025 * 125.64670 * 174.37655 * 10 8 7 25 25 H 1.08994 * 110.01141 * 59.48048 * 24 10 8 26 26 C 1.53002 * 109.87972 * 298.39225 * 24 10 8 27 27 S 1.70625 * 124.52190 * 269.97188 * 4 3 2 28 28 H 1.09000 * 109.47388 * 299.99631 * 1 2 3 29 29 H 1.09000 * 109.47288 * 60.00440 * 1 2 3 30 30 H 1.09003 * 109.47056 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46901 * 240.00466 * 2 1 3 32 32 H 1.08994 * 109.47416 * 119.99982 * 2 1 3 33 33 H 1.09001 * 109.47443 * 59.99935 * 3 2 1 34 34 H 1.09006 * 109.47337 * 299.99758 * 3 2 1 35 35 H 1.07998 * 122.44608 * 359.95533 * 5 4 3 36 36 H 1.07997 * 123.34881 * 180.29602 * 6 5 4 37 37 H 1.09007 * 110.36625 * 322.93107 * 11 10 8 38 38 H 1.09000 * 110.36792 * 85.25440 * 11 10 8 39 39 H 1.08998 * 111.00428 * 204.91392 * 12 11 10 40 40 H 1.09002 * 111.00581 * 81.06261 * 12 11 10 41 41 H 0.97000 * 119.99737 * 88.52471 * 15 13 12 42 42 H 0.96989 * 120.00462 * 359.97438 * 19 18 16 43 43 H 1.09005 * 109.46833 * 302.18713 * 26 24 10 44 44 H 1.09001 * 109.47365 * 62.19368 * 26 24 10 45 45 H 1.09006 * 109.47079 * 182.19185 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4426 -0.0006 5 6 4.3049 1.4428 -1.1034 6 6 5.6612 1.4492 -0.8788 7 6 5.9893 1.4435 0.4476 8 6 7.3526 1.4441 0.9863 9 8 8.3039 1.3356 0.2349 10 7 7.5526 1.5647 2.3136 11 6 6.5063 1.8186 3.3207 12 6 7.2520 2.4707 4.5116 13 6 8.5947 1.6932 4.5018 14 1 9.3929 2.2910 4.9419 15 7 8.4588 0.4153 5.2050 16 6 8.7366 0.3374 6.5437 17 1 9.0554 1.2183 7.0810 18 6 8.6073 -0.8734 7.2101 19 7 8.2182 -1.9467 6.5552 20 14 8.9856 -0.9793 9.0364 21 1 10.4204 -1.3117 9.2261 22 1 8.1464 -2.0367 9.6551 23 1 8.6907 0.3263 9.6795 24 6 8.8504 1.4640 2.9972 25 1 9.5322 2.2246 2.6170 26 6 9.4480 0.0729 2.7769 27 16 4.5144 1.4431 1.4048 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6765 1.9564 0.8900 34 1 1.6765 1.9564 -0.8900 35 1 3.8820 1.4422 -2.0972 36 1 6.3942 1.4549 -1.6719 37 1 5.7553 2.5016 2.9235 38 1 6.0426 0.8820 3.6304 39 1 6.7137 2.3090 5.4454 40 1 7.4149 3.5340 4.3356 41 1 8.1721 -0.3758 4.7224 42 1 8.0214 -1.8916 5.6071 43 1 8.7532 -0.6831 3.1430 44 1 9.6258 -0.0819 1.7127 45 1 10.3907 -0.0075 3.3183 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986311842.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:31 Heat of formation + Delta-G solvation = -13.351319 kcal Electronic energy + Delta-G solvation = -25125.369885 eV Core-core repulsion = 21654.742117 eV Total energy + Delta-G solvation = -3470.627768 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.45980 -39.53614 -38.55316 -36.12017 -35.79746 -33.55952 -32.47194 -31.36835 -30.33608 -27.79708 -26.85282 -25.53901 -24.95744 -23.84637 -22.37436 -22.24115 -20.71556 -19.60899 -19.43031 -18.92444 -17.62679 -17.21353 -16.76325 -16.60591 -15.93358 -15.84470 -15.47416 -15.32714 -14.97278 -14.72599 -14.49669 -14.29559 -14.08890 -13.99864 -13.61891 -13.55649 -13.24553 -13.12400 -12.91848 -12.74024 -12.60234 -12.50140 -12.35954 -12.09556 -11.95165 -11.94139 -11.79173 -11.70576 -11.41884 -11.26047 -11.14755 -10.91595 -10.00425 -9.60507 -9.51653 -9.11084 -8.33849 -5.29180 -0.54280 0.43727 0.92413 1.33370 1.62291 1.71861 1.78554 1.85530 2.08387 2.73784 3.30768 3.43651 3.59315 3.66956 3.69171 3.87057 4.03655 4.08017 4.09878 4.14324 4.22857 4.27254 4.36628 4.40347 4.50692 4.60125 4.65141 4.70416 4.76390 4.82211 4.90634 4.94290 4.99803 5.04772 5.11359 5.16852 5.20028 5.22644 5.27417 5.32023 5.41175 5.43999 5.66913 6.33739 6.52425 6.91637 7.10387 8.00454 8.13131 9.16921 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014408 B = 0.003415 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.908393 B = 8198.244450 C = 9438.550547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C -0.050 4.050 4 C -0.197 4.197 5 C -0.160 4.160 6 C -0.050 4.050 7 C -0.303 4.303 8 C 0.597 3.403 9 O -0.573 6.573 10 N -0.606 5.606 11 C 0.098 3.902 12 C -0.141 4.141 13 C 0.171 3.829 14 H 0.078 0.922 15 N -0.735 5.735 16 C -0.323 4.323 17 H 0.073 0.927 18 C -0.103 4.103 19 N -0.977 5.977 20 Si 1.128 2.872 21 H -0.290 1.290 22 H -0.298 1.298 23 H -0.269 1.269 24 C 0.131 3.869 25 H 0.086 0.914 26 C -0.136 4.136 27 S 0.231 5.769 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.052 0.948 33 H 0.084 0.916 34 H 0.102 0.898 35 H 0.167 0.833 36 H 0.150 0.850 37 H 0.097 0.903 38 H 0.061 0.939 39 H 0.081 0.919 40 H 0.096 0.904 41 H 0.362 0.638 42 H 0.241 0.759 43 H 0.038 0.962 44 H 0.051 0.949 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.679 10.755 -13.630 22.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.089 4.089 4 C -0.316 4.316 5 C -0.189 4.189 6 C -0.084 4.084 7 C -0.423 4.423 8 C 0.388 3.612 9 O -0.456 6.456 10 N -0.338 5.338 11 C -0.025 4.025 12 C -0.182 4.182 13 C 0.061 3.939 14 H 0.096 0.904 15 N -0.378 5.378 16 C -0.454 4.454 17 H 0.091 0.909 18 C -0.294 4.294 19 N -0.625 5.625 20 Si 0.954 3.046 21 H -0.217 1.217 22 H -0.225 1.225 23 H -0.194 1.194 24 C 0.027 3.973 25 H 0.104 0.896 26 C -0.194 4.194 27 S 0.501 5.499 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.102 0.898 34 H 0.120 0.880 35 H 0.184 0.816 36 H 0.167 0.833 37 H 0.115 0.885 38 H 0.079 0.921 39 H 0.100 0.900 40 H 0.114 0.886 41 H 0.197 0.803 42 H 0.052 0.948 43 H 0.057 0.943 44 H 0.070 0.930 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.379 9.883 -11.084 20.671 hybrid contribution 0.522 0.285 -3.101 3.158 sum -13.857 10.168 -14.185 22.285 Atomic orbital electron populations 1.21761 0.94119 1.02274 1.02591 1.21560 0.96964 0.95232 1.02195 1.20369 0.85268 0.98413 1.04841 1.25015 1.02692 1.05364 0.98557 1.20093 0.91421 1.06564 1.00830 1.20908 0.97348 0.95689 0.94472 1.24430 0.96463 1.22228 0.99177 1.16985 0.87708 0.75990 0.80497 1.90758 1.43591 1.53153 1.58070 1.48493 1.10031 1.70069 1.05243 1.22471 0.90603 1.00554 0.88895 1.23360 0.97816 0.99951 0.97096 1.21338 0.96487 0.87643 0.88465 0.90366 1.42685 1.81527 1.06611 1.07009 1.20394 1.40926 0.97353 0.86743 0.90868 1.27067 1.00848 0.91666 1.09860 1.70969 1.51429 1.30662 1.09443 0.82598 0.75936 0.75719 0.70340 1.21736 1.22489 1.19440 1.21918 0.84701 0.97671 0.92993 0.89618 1.21766 1.00708 0.96434 1.00521 1.83473 0.92580 1.67249 1.06640 0.92244 0.91548 0.92425 0.91691 0.92905 0.89753 0.87972 0.81591 0.83278 0.88502 0.92110 0.90041 0.88599 0.80324 0.94810 0.94319 0.93029 0.91801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.91 71.98 0.71 -0.83 16 2 C -0.12 -1.60 5.92 30.59 0.18 -1.42 16 3 C -0.05 -0.63 5.65 29.85 0.17 -0.47 16 4 C -0.20 -3.62 5.53 24.68 0.14 -3.48 16 5 C -0.16 -3.03 10.00 21.08 0.21 -2.82 16 6 C -0.05 -1.23 10.02 21.72 0.22 -1.02 16 7 C -0.30 -8.76 6.34 24.08 0.15 -8.61 16 8 C 0.60 21.15 7.55 86.42 0.65 21.80 16 9 O -0.57 -23.59 16.11 -4.36 -0.07 -23.66 16 10 N -0.61 -20.47 3.06 -792.80 -2.43 -22.90 16 11 C 0.10 2.93 5.25 86.86 0.46 3.39 16 12 C -0.14 -4.34 6.77 31.99 0.22 -4.12 16 13 C 0.17 6.36 3.48 46.18 0.16 6.52 16 14 H 0.08 2.86 8.09 -2.38 -0.02 2.84 16 15 N -0.74 -34.72 4.55 -317.33 -1.44 -36.16 16 16 C -0.32 -17.02 9.96 84.03 0.84 -16.19 16 17 H 0.07 3.71 7.83 -2.91 -0.02 3.69 16 18 C -0.10 -5.78 5.50 84.86 0.47 -5.31 16 19 N -0.98 -60.01 13.70 21.65 0.30 -59.71 16 20 Si 1.13 50.57 29.92 68.60 2.05 52.62 16 21 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 22 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 23 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 24 C 0.13 4.68 3.40 45.34 0.15 4.83 16 25 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16 26 C -0.14 -5.36 8.48 71.98 0.61 -4.75 16 27 S 0.23 5.23 18.62 -56.49 -1.05 4.18 16 28 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 35 H 0.17 2.21 8.06 -2.91 -0.02 2.18 16 36 H 0.15 3.62 8.06 -2.91 -0.02 3.59 16 37 H 0.10 2.40 5.75 -10.69 -0.06 2.34 16 38 H 0.06 2.01 7.95 -2.39 -0.02 2.00 16 39 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 40 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 41 H 0.36 18.44 4.52 -92.71 -0.42 18.02 16 42 H 0.24 14.93 6.77 -92.72 -0.63 14.30 16 43 H 0.04 1.67 6.24 -2.38 -0.01 1.66 16 44 H 0.05 2.04 7.09 -2.39 -0.02 2.02 16 45 H 0.06 2.54 8.14 -2.38 -0.02 2.52 16 Total: -1.00 -68.22 370.95 3.35 -64.87 By element: Atomic # 1 Polarization: 32.58 SS G_CDS: 0.66 Total: 33.24 kcal Atomic # 6 Polarization: -17.81 SS G_CDS: 5.34 Total: -12.47 kcal Atomic # 7 Polarization: -115.20 SS G_CDS: -3.58 Total: -118.78 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: -0.07 Total: -23.66 kcal Atomic # 14 Polarization: 50.57 SS G_CDS: 2.05 Total: 52.62 kcal Atomic # 16 Polarization: 5.23 SS G_CDS: -1.05 Total: 4.18 kcal Total: -68.22 3.35 -64.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986311842.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.516 kcal (2) G-P(sol) polarization free energy of solvation -68.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds