Wall clock time and date at job start Tue Mar 31 2020 13:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47011 * 2 1 4 4 C 1.50697 * 109.47126 * 180.02562 * 3 2 1 5 5 C 1.33814 * 124.52506 * 90.00600 * 4 3 2 6 6 C 1.37479 * 115.10223 * 179.74850 * 5 4 3 7 7 C 1.36646 * 113.29183 * 0.48896 * 6 5 4 8 8 C 1.46589 * 125.45412 * 179.80551 * 7 6 5 9 9 O 1.21700 * 119.99864 * 353.76444 * 8 7 6 10 10 N 1.34777 * 119.99725 * 173.76885 * 8 7 6 11 11 C 1.47423 * 125.64915 * 354.37002 * 10 8 7 12 12 C 1.54916 * 104.83281 * 204.16648 * 11 10 8 13 13 C 1.55158 * 101.58005 * 322.99664 * 12 11 10 14 14 H 1.09006 * 110.71448 * 276.95693 * 13 12 11 15 15 N 1.46498 * 110.71992 * 153.86654 * 13 12 11 16 16 C 1.36940 * 120.00283 * 88.83897 * 15 13 12 17 17 H 1.07995 * 119.99827 * 359.97438 * 16 15 13 18 18 C 1.38815 * 119.99789 * 180.02562 * 16 15 13 19 19 N 1.31619 * 120.00115 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99650 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47265 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47006 * 239.99712 * 20 18 16 23 23 H 1.48503 * 109.47179 * 119.99726 * 20 18 16 24 24 C 1.47321 * 125.61540 * 174.23655 * 10 8 7 25 25 H 1.09001 * 109.85077 * 59.49883 * 24 10 8 26 26 C 1.53003 * 110.06276 * 298.24916 * 24 10 8 27 27 S 1.70623 * 124.51886 * 270.02226 * 4 3 2 28 28 H 1.09000 * 109.47162 * 59.99914 * 1 2 3 29 29 H 1.08995 * 109.47148 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47427 * 300.00388 * 1 2 3 31 31 H 1.09002 * 109.47323 * 240.00379 * 2 1 3 32 32 H 1.08996 * 109.47563 * 119.99801 * 2 1 3 33 33 H 1.09000 * 109.47342 * 59.99559 * 3 2 1 34 34 H 1.09000 * 109.47228 * 300.00045 * 3 2 1 35 35 H 1.07994 * 122.44810 * 0.03139 * 5 4 3 36 36 H 1.07996 * 123.35078 * 180.28925 * 6 5 4 37 37 H 1.08996 * 110.36595 * 85.33105 * 11 10 8 38 38 H 1.08994 * 110.46451 * 323.05239 * 11 10 8 39 39 H 1.08997 * 111.00779 * 204.91848 * 12 11 10 40 40 H 1.09002 * 111.00065 * 81.06494 * 12 11 10 41 41 H 0.97006 * 119.99792 * 268.83633 * 15 13 12 42 42 H 0.97001 * 119.99906 * 359.97438 * 19 18 16 43 43 H 1.09002 * 109.46717 * 302.26325 * 26 24 10 44 44 H 1.08994 * 109.47299 * 62.25956 * 26 24 10 45 45 H 1.08993 * 109.47190 * 182.26883 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4425 -0.0006 5 6 4.3049 1.4428 -1.1034 6 6 5.6612 1.4483 -0.8789 7 6 5.9893 1.4417 0.4475 8 6 7.3527 1.4412 0.9862 9 8 8.3038 1.3324 0.2348 10 7 7.5527 1.5611 2.3136 11 6 6.5067 1.8162 3.3207 12 6 7.2529 2.4686 4.5112 13 6 8.5953 1.6904 4.5015 14 1 8.4945 0.7413 5.0281 15 7 9.6663 2.4972 5.0916 16 6 9.8996 2.4447 6.4399 17 1 9.2938 1.8089 7.0684 18 6 10.9142 3.2096 6.9990 19 7 11.6522 3.9849 6.2331 20 14 11.2320 3.1385 8.8384 21 1 10.2726 2.1977 9.4705 22 1 11.0572 4.4920 9.4235 23 1 12.6193 2.6687 9.0832 24 6 8.8530 1.4561 2.9982 25 1 9.5349 2.2158 2.6161 26 6 9.4484 0.0632 2.7832 27 16 4.5144 1.4418 1.4048 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6766 1.9564 0.8899 34 1 1.6766 1.9564 -0.8900 35 1 3.8820 1.4436 -2.0971 36 1 6.3942 1.4537 -1.6720 37 1 6.0426 0.8801 3.6310 38 1 5.7547 2.4985 2.9245 39 1 6.7147 2.3076 5.4452 40 1 7.4164 3.5317 4.3344 41 1 10.2103 3.0686 4.5271 42 1 11.4874 4.0215 5.2779 43 1 8.7517 -0.6904 3.1503 44 1 9.6277 -0.0951 1.7198 45 1 10.3899 -0.0173 3.3263 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986311845.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:39 Heat of formation + Delta-G solvation = -2.226472 kcal Electronic energy + Delta-G solvation = -24707.928876 eV Core-core repulsion = 21237.783518 eV Total energy + Delta-G solvation = -3470.145359 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.08211 -38.47645 -37.28002 -35.16963 -34.46309 -31.98291 -31.08994 -30.42234 -29.02044 -26.96400 -25.15432 -24.15649 -23.19619 -22.71793 -21.82156 -21.01140 -19.81077 -18.51214 -17.90147 -17.39035 -16.20955 -16.13544 -15.59938 -15.24724 -14.97424 -14.55634 -14.21715 -14.02668 -13.73235 -13.57028 -13.54062 -13.04409 -12.88503 -12.85668 -12.64410 -12.37368 -12.18427 -12.00272 -11.82805 -11.78787 -11.57222 -11.29779 -11.16580 -10.99427 -10.83939 -10.63347 -10.48359 -10.26942 -10.08360 -9.88459 -9.25356 -8.99775 -8.88429 -8.71220 -8.44806 -7.13583 -6.16876 -3.19046 0.38679 1.32747 1.76819 2.25950 2.99337 3.24004 3.48678 3.55083 3.64210 4.31135 4.51198 4.55296 4.61139 4.63723 4.85451 4.94474 5.08520 5.13485 5.17107 5.19976 5.29951 5.35374 5.37679 5.39984 5.46274 5.61158 5.64099 5.65069 5.69074 5.78142 5.84878 5.87807 5.91477 5.96492 6.02182 6.16384 6.21754 6.32453 6.45692 6.49630 6.60002 6.78829 7.59479 7.74419 8.19619 8.68204 9.12254 9.98872 10.12424 11.31041 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.022287 B = 0.002725 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.049903 B =10272.354481 C =11079.052896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.051 4.051 4 C -0.214 4.214 5 C -0.153 4.153 6 C -0.057 4.057 7 C -0.260 4.260 8 C 0.601 3.399 9 O -0.533 6.533 10 N -0.606 5.606 11 C 0.087 3.913 12 C -0.149 4.149 13 C 0.182 3.818 14 H 0.069 0.931 15 N -0.725 5.725 16 C -0.336 4.336 17 H 0.068 0.932 18 C -0.042 4.042 19 N -0.941 5.941 20 Si 1.086 2.914 21 H -0.294 1.294 22 H -0.293 1.293 23 H -0.293 1.293 24 C 0.128 3.872 25 H 0.078 0.922 26 C -0.154 4.154 27 S 0.220 5.780 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.139 0.861 36 H 0.151 0.849 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.369 0.631 42 H 0.257 0.743 43 H 0.052 0.948 44 H 0.060 0.940 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.028 -7.339 -12.450 26.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.090 4.090 4 C -0.333 4.333 5 C -0.184 4.184 6 C -0.090 4.090 7 C -0.381 4.381 8 C 0.389 3.611 9 O -0.412 6.412 10 N -0.339 5.339 11 C -0.038 4.038 12 C -0.191 4.191 13 C 0.070 3.930 14 H 0.087 0.913 15 N -0.367 5.367 16 C -0.466 4.466 17 H 0.086 0.914 18 C -0.240 4.240 19 N -0.585 5.585 20 Si 0.917 3.083 21 H -0.220 1.220 22 H -0.220 1.220 23 H -0.220 1.220 24 C 0.025 3.975 25 H 0.096 0.904 26 C -0.212 4.212 27 S 0.489 5.511 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.157 0.843 36 H 0.168 0.832 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.099 0.901 40 H 0.094 0.906 41 H 0.203 0.797 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.079 0.921 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -20.986 -6.954 -9.965 24.251 hybrid contribution -0.697 -0.353 -3.088 3.186 sum -21.684 -7.307 -13.054 26.343 Atomic orbital electron populations 1.21781 0.95322 1.01958 1.01963 1.21563 0.95915 0.95596 1.02783 1.20224 0.87349 0.97969 1.03414 1.24621 1.01388 1.07795 0.99486 1.19894 0.92525 1.06537 0.99434 1.20703 0.96150 0.97041 0.95128 1.24598 0.96810 1.18679 0.97983 1.16582 0.86766 0.76995 0.80742 1.90811 1.42093 1.51097 1.57219 1.48469 1.10209 1.70265 1.04999 1.22545 0.90831 1.00305 0.90103 1.23543 0.98769 1.01094 0.95665 1.21178 0.88154 0.94589 0.89034 0.91300 1.42369 1.37052 1.51016 1.06247 1.20063 1.17054 1.25682 0.83822 0.91435 1.25809 0.94829 0.96488 1.06874 1.70817 1.41390 1.40435 1.05902 0.83144 0.75628 0.75641 0.73899 1.22045 1.21972 1.21959 1.22007 0.83704 0.98194 0.93615 0.90413 1.22032 1.01301 0.95530 1.02319 1.83442 0.93661 1.67651 1.06331 0.92610 0.92450 0.92544 0.91546 0.91650 0.90648 0.90056 0.84329 0.83170 0.91043 0.90786 0.90129 0.90566 0.79702 0.93186 0.92879 0.92060 0.90915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.91 37.16 0.37 -0.41 16 2 C -0.12 -0.76 5.92 -26.73 -0.16 -0.92 16 3 C -0.05 -0.35 5.65 -27.88 -0.16 -0.50 16 4 C -0.21 -1.99 5.53 -35.86 -0.20 -2.19 16 5 C -0.15 -1.51 9.99 -41.41 -0.41 -1.93 16 6 C -0.06 -0.69 10.02 -40.43 -0.41 -1.10 16 7 C -0.26 -3.57 6.34 -36.79 -0.23 -3.80 16 8 C 0.60 10.14 7.56 -12.89 -0.10 10.04 16 9 O -0.53 -10.59 16.15 5.19 0.08 -10.51 16 10 N -0.61 -9.83 3.08 -164.36 -0.51 -10.33 16 11 C 0.09 1.19 5.28 -2.53 -0.01 1.18 16 12 C -0.15 -2.45 6.77 -24.58 -0.17 -2.61 16 13 C 0.18 3.49 3.12 -66.10 -0.21 3.28 16 14 H 0.07 1.33 7.81 -51.93 -0.41 0.92 16 15 N -0.73 -17.44 5.23 -51.65 -0.27 -17.71 16 16 C -0.34 -9.02 9.97 -15.06 -0.15 -9.17 16 17 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 18 C -0.04 -1.18 5.50 -17.43 -0.10 -1.28 16 19 N -0.94 -28.61 13.70 55.49 0.76 -27.85 16 20 Si 1.09 25.39 29.92 -169.99 -5.09 20.30 16 21 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 C 0.13 2.30 3.19 -66.79 -0.21 2.09 16 25 H 0.08 1.56 7.70 -51.93 -0.40 1.16 16 26 C -0.15 -2.59 9.11 37.16 0.34 -2.25 16 27 S 0.22 2.30 18.62 -107.50 -2.00 0.30 16 28 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.14 1.07 8.06 -52.49 -0.42 0.64 16 36 H 0.15 1.77 8.06 -52.49 -0.42 1.35 16 37 H 0.07 0.86 7.95 -51.93 -0.41 0.45 16 38 H 0.07 0.91 5.75 -38.82 -0.22 0.69 16 39 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 41 H 0.37 9.35 6.37 -40.82 -0.26 9.09 16 42 H 0.26 7.72 6.77 -40.82 -0.28 7.44 16 43 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 44 H 0.06 1.07 7.13 -51.93 -0.37 0.70 16 45 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 374.85 15.07 5.65 5.65 Total: -1.00 -31.89 374.85 -10.22 -42.11 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -7.05 Total: 7.61 kcal Atomic # 6 Polarization: -7.77 SS G_CDS: -1.80 Total: -9.57 kcal Atomic # 7 Polarization: -55.88 SS G_CDS: -0.02 Total: -55.89 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.08 Total: -10.51 kcal Atomic # 14 Polarization: 25.39 SS G_CDS: -5.09 Total: 20.30 kcal Atomic # 16 Polarization: 2.30 SS G_CDS: -2.00 Total: 0.30 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.89 -10.22 -42.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986311845.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.887 kcal (2) G-P(sol) polarization free energy of solvation -31.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds