Wall clock time and date at job start Tue Mar 31 2020 13:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47011 * 2 1 4 4 C 1.50697 * 109.47126 * 180.02562 * 3 2 1 5 5 C 1.33814 * 124.52506 * 90.00600 * 4 3 2 6 6 C 1.37479 * 115.10223 * 179.74850 * 5 4 3 7 7 C 1.36646 * 113.29183 * 0.48896 * 6 5 4 8 8 C 1.46589 * 125.45412 * 179.80551 * 7 6 5 9 9 O 1.21700 * 119.99864 * 353.76444 * 8 7 6 10 10 N 1.34777 * 119.99725 * 173.76885 * 8 7 6 11 11 C 1.47423 * 125.64915 * 354.37002 * 10 8 7 12 12 C 1.54916 * 104.83281 * 204.16648 * 11 10 8 13 13 C 1.55158 * 101.58005 * 322.99664 * 12 11 10 14 14 H 1.09006 * 110.71448 * 276.95693 * 13 12 11 15 15 N 1.46498 * 110.71992 * 153.86654 * 13 12 11 16 16 C 1.36940 * 120.00283 * 88.83897 * 15 13 12 17 17 H 1.07995 * 119.99827 * 359.97438 * 16 15 13 18 18 C 1.38815 * 119.99789 * 180.02562 * 16 15 13 19 19 N 1.31619 * 120.00115 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99650 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47265 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47006 * 239.99712 * 20 18 16 23 23 H 1.48503 * 109.47179 * 119.99726 * 20 18 16 24 24 C 1.47321 * 125.61540 * 174.23655 * 10 8 7 25 25 H 1.09001 * 109.85077 * 59.49883 * 24 10 8 26 26 C 1.53003 * 110.06276 * 298.24916 * 24 10 8 27 27 S 1.70623 * 124.51886 * 270.02226 * 4 3 2 28 28 H 1.09000 * 109.47162 * 59.99914 * 1 2 3 29 29 H 1.08995 * 109.47148 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47427 * 300.00388 * 1 2 3 31 31 H 1.09002 * 109.47323 * 240.00379 * 2 1 3 32 32 H 1.08996 * 109.47563 * 119.99801 * 2 1 3 33 33 H 1.09000 * 109.47342 * 59.99559 * 3 2 1 34 34 H 1.09000 * 109.47228 * 300.00045 * 3 2 1 35 35 H 1.07994 * 122.44810 * 0.03139 * 5 4 3 36 36 H 1.07996 * 123.35078 * 180.28925 * 6 5 4 37 37 H 1.08996 * 110.36595 * 85.33105 * 11 10 8 38 38 H 1.08994 * 110.46451 * 323.05239 * 11 10 8 39 39 H 1.08997 * 111.00779 * 204.91848 * 12 11 10 40 40 H 1.09002 * 111.00065 * 81.06494 * 12 11 10 41 41 H 0.97006 * 119.99792 * 268.83633 * 15 13 12 42 42 H 0.97001 * 119.99906 * 359.97438 * 19 18 16 43 43 H 1.09002 * 109.46717 * 302.26325 * 26 24 10 44 44 H 1.08994 * 109.47299 * 62.25956 * 26 24 10 45 45 H 1.08993 * 109.47190 * 182.26883 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4425 -0.0006 5 6 4.3049 1.4428 -1.1034 6 6 5.6612 1.4483 -0.8789 7 6 5.9893 1.4417 0.4475 8 6 7.3527 1.4412 0.9862 9 8 8.3038 1.3324 0.2348 10 7 7.5527 1.5611 2.3136 11 6 6.5067 1.8162 3.3207 12 6 7.2529 2.4686 4.5112 13 6 8.5953 1.6904 4.5015 14 1 8.4945 0.7413 5.0281 15 7 9.6663 2.4972 5.0916 16 6 9.8996 2.4447 6.4399 17 1 9.2938 1.8089 7.0684 18 6 10.9142 3.2096 6.9990 19 7 11.6522 3.9849 6.2331 20 14 11.2320 3.1385 8.8384 21 1 10.2726 2.1977 9.4705 22 1 11.0572 4.4920 9.4235 23 1 12.6193 2.6687 9.0832 24 6 8.8530 1.4561 2.9982 25 1 9.5349 2.2158 2.6161 26 6 9.4484 0.0632 2.7832 27 16 4.5144 1.4418 1.4048 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6766 1.9564 0.8899 34 1 1.6766 1.9564 -0.8900 35 1 3.8820 1.4436 -2.0971 36 1 6.3942 1.4537 -1.6720 37 1 6.0426 0.8801 3.6310 38 1 5.7547 2.4985 2.9245 39 1 6.7147 2.3076 5.4452 40 1 7.4164 3.5317 4.3344 41 1 10.2103 3.0686 4.5271 42 1 11.4874 4.0215 5.2779 43 1 8.7517 -0.6904 3.1503 44 1 9.6277 -0.0951 1.7198 45 1 10.3899 -0.0173 3.3263 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986311845.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:38 Heat of formation + Delta-G solvation = -20.439477 kcal Electronic energy + Delta-G solvation = -24708.718652 eV Core-core repulsion = 21237.783518 eV Total energy + Delta-G solvation = -3470.935134 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.40980 -39.48553 -38.52358 -36.29660 -35.78065 -33.59502 -32.51721 -31.39109 -30.52352 -27.80634 -26.78559 -25.14397 -24.90827 -23.86269 -22.36544 -22.29039 -21.18395 -19.56371 -19.44323 -18.87896 -17.55044 -17.15889 -16.73747 -16.63407 -15.93435 -15.85219 -15.52520 -15.32704 -14.94370 -14.75096 -14.57684 -14.26941 -14.09380 -13.84679 -13.74268 -13.55927 -13.27147 -13.21973 -12.77903 -12.74524 -12.72123 -12.53686 -12.33762 -12.23217 -12.06806 -11.83618 -11.82136 -11.70742 -11.45459 -11.31166 -11.16263 -10.92313 -10.02487 -9.60176 -9.48767 -9.15407 -8.38119 -5.34430 -0.54356 0.44361 0.91799 1.33518 1.60858 1.71353 1.72658 1.83399 2.07728 2.72714 3.29007 3.41496 3.53994 3.64964 3.70246 3.85718 4.02513 4.06742 4.15512 4.16987 4.22177 4.28091 4.33183 4.41051 4.48332 4.52843 4.62557 4.71845 4.74177 4.85246 4.88894 4.97183 4.99974 5.07681 5.08799 5.11578 5.20949 5.24839 5.29376 5.30612 5.42290 5.46400 5.62591 6.32528 6.48060 6.90422 7.04996 7.93849 8.07577 9.13141 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.022287 B = 0.002725 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.049903 B =10272.354481 C =11079.052896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C -0.051 4.051 4 C -0.196 4.196 5 C -0.162 4.162 6 C -0.052 4.052 7 C -0.304 4.304 8 C 0.597 3.403 9 O -0.577 6.577 10 N -0.608 5.608 11 C 0.094 3.906 12 C -0.141 4.141 13 C 0.178 3.822 14 H 0.075 0.925 15 N -0.740 5.740 16 C -0.323 4.323 17 H 0.077 0.923 18 C -0.106 4.106 19 N -0.978 5.978 20 Si 1.133 2.867 21 H -0.265 1.265 22 H -0.294 1.294 23 H -0.296 1.296 24 C 0.133 3.867 25 H 0.046 0.954 26 C -0.143 4.143 27 S 0.251 5.749 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.163 0.837 36 H 0.145 0.855 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.097 0.903 40 H 0.057 0.943 41 H 0.357 0.643 42 H 0.243 0.757 43 H 0.071 0.929 44 H 0.051 0.949 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.811 -8.398 -12.069 29.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.090 4.090 4 C -0.316 4.316 5 C -0.191 4.191 6 C -0.087 4.087 7 C -0.424 4.424 8 C 0.388 3.612 9 O -0.460 6.460 10 N -0.340 5.340 11 C -0.030 4.030 12 C -0.182 4.182 13 C 0.068 3.932 14 H 0.093 0.907 15 N -0.381 5.381 16 C -0.454 4.454 17 H 0.095 0.905 18 C -0.297 4.297 19 N -0.627 5.627 20 Si 0.958 3.042 21 H -0.190 1.190 22 H -0.221 1.221 23 H -0.223 1.223 24 C 0.029 3.971 25 H 0.065 0.935 26 C -0.202 4.202 27 S 0.521 5.479 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.104 0.896 34 H 0.115 0.885 35 H 0.181 0.819 36 H 0.162 0.838 37 H 0.118 0.882 38 H 0.111 0.889 39 H 0.116 0.884 40 H 0.075 0.925 41 H 0.189 0.811 42 H 0.053 0.947 43 H 0.090 0.910 44 H 0.070 0.930 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -24.846 -8.048 -9.584 27.820 hybrid contribution 0.323 -0.069 -3.328 3.345 sum -24.523 -8.117 -12.912 28.879 Atomic orbital electron populations 1.21767 0.94337 1.02290 1.02478 1.21549 0.96746 0.94986 1.02452 1.20381 0.85231 0.98667 1.04770 1.25014 1.02706 1.05171 0.98691 1.20058 0.91355 1.06778 1.00908 1.20894 0.97363 0.95827 0.94593 1.24372 0.96466 1.22289 0.99247 1.17062 0.87830 0.75954 0.80382 1.90773 1.43893 1.53173 1.58133 1.48482 1.09892 1.70247 1.05419 1.22658 0.90205 1.01860 0.88248 1.23359 0.97336 0.99668 0.97804 1.21356 0.88121 0.94465 0.89269 0.90696 1.42552 1.38353 1.51647 1.05551 1.20410 1.15889 1.24076 0.85046 0.90536 1.27214 0.95357 0.96727 1.10432 1.70938 1.43374 1.42965 1.05376 0.82550 0.75905 0.76091 0.69663 1.18973 1.22072 1.22287 1.21742 0.84465 0.97857 0.93035 0.93540 1.21924 1.01252 0.95387 1.01597 1.83134 0.91623 1.67017 1.06129 0.91980 0.92277 0.92171 0.91787 0.92169 0.89571 0.88476 0.81903 0.83776 0.88228 0.88876 0.88417 0.92453 0.81053 0.94680 0.90958 0.93009 0.91857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 71.98 0.71 -0.36 16 2 C -0.12 -1.11 5.92 30.59 0.18 -0.93 16 3 C -0.05 -0.50 5.65 29.85 0.17 -0.34 16 4 C -0.20 -3.02 5.53 24.68 0.14 -2.88 16 5 C -0.16 -2.77 9.99 21.08 0.21 -2.56 16 6 C -0.05 -1.22 10.02 21.72 0.22 -1.00 16 7 C -0.30 -8.05 6.34 24.08 0.15 -7.89 16 8 C 0.60 20.38 7.56 86.42 0.65 21.03 16 9 O -0.58 -23.95 16.15 -4.35 -0.07 -24.02 16 10 N -0.61 -19.59 3.08 -792.12 -2.44 -22.03 16 11 C 0.09 2.38 5.28 86.86 0.46 2.83 16 12 C -0.14 -4.43 6.77 31.99 0.22 -4.22 16 13 C 0.18 6.77 3.12 46.18 0.14 6.91 16 14 H 0.08 2.78 7.81 -2.38 -0.02 2.77 16 15 N -0.74 -36.34 5.23 -317.34 -1.66 -38.00 16 16 C -0.32 -17.37 9.97 84.03 0.84 -16.53 16 17 H 0.08 3.92 7.83 -2.91 -0.02 3.90 16 18 C -0.11 -6.06 5.50 84.86 0.47 -5.59 16 19 N -0.98 -61.31 13.70 21.65 0.30 -61.02 16 20 Si 1.13 51.02 29.92 68.60 2.05 53.07 16 21 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 22 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 23 H -0.30 -13.36 7.11 99.48 0.71 -12.65 16 24 C 0.13 4.91 3.19 45.28 0.14 5.05 16 25 H 0.05 2.00 7.70 -2.39 -0.02 1.98 16 26 C -0.14 -4.93 9.11 71.98 0.66 -4.27 16 27 S 0.25 4.56 18.62 -56.49 -1.05 3.51 16 28 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 36 H 0.14 3.43 8.06 -2.91 -0.02 3.41 16 37 H 0.10 2.03 7.95 -2.39 -0.02 2.02 16 38 H 0.09 2.05 5.75 -10.73 -0.06 1.99 16 39 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 40 H 0.06 2.03 8.14 -2.39 -0.02 2.02 16 41 H 0.36 19.04 6.37 -92.70 -0.59 18.45 16 42 H 0.24 15.31 6.77 -92.71 -0.63 14.69 16 43 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 44 H 0.05 1.87 7.13 -2.39 -0.02 1.85 16 45 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -71.29 374.85 2.97 -68.32 By element: Atomic # 1 Polarization: 30.43 SS G_CDS: 0.48 Total: 30.91 kcal Atomic # 6 Polarization: -16.10 SS G_CDS: 5.36 Total: -10.74 kcal Atomic # 7 Polarization: -117.25 SS G_CDS: -3.80 Total: -121.05 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: -0.07 Total: -24.02 kcal Atomic # 14 Polarization: 51.02 SS G_CDS: 2.05 Total: 53.07 kcal Atomic # 16 Polarization: 4.56 SS G_CDS: -1.05 Total: 3.51 kcal Total: -71.29 2.97 -68.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986311845.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.876 kcal (2) G-P(sol) polarization free energy of solvation -71.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds