Wall clock time and date at job start Tue Mar 31 2020 13:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50707 * 109.47193 * 2 1 4 4 C 1.37477 * 122.45054 * 265.31965 * 3 2 1 5 5 C 1.36645 * 113.29394 * 180.19691 * 4 3 2 6 6 C 1.46585 * 125.45226 * 179.79658 * 5 4 3 7 7 O 1.21696 * 120.00192 * 6.16299 * 6 5 4 8 8 N 1.34776 * 119.99578 * 186.15820 * 6 5 4 9 9 C 1.47422 * 125.64861 * 5.72660 * 8 6 5 10 10 C 1.54915 * 104.82960 * 155.90514 * 9 8 6 11 11 C 1.55161 * 101.58103 * 37.01184 * 10 9 8 12 12 H 1.08994 * 110.71941 * 205.95649 * 11 10 9 13 13 N 1.46504 * 110.72102 * 82.86075 * 11 10 9 14 14 C 1.36933 * 119.99975 * 150.09638 * 13 11 10 15 15 H 1.08001 * 120.00147 * 359.97438 * 14 13 11 16 16 C 1.38805 * 119.99738 * 179.97438 * 14 13 11 17 17 N 1.31620 * 120.00223 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 119.99702 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47168 * 269.99922 * 18 16 14 20 20 H 1.48494 * 109.47315 * 30.00635 * 18 16 14 21 21 H 1.48502 * 109.46934 * 150.00439 * 18 16 14 22 22 C 1.47020 * 125.64581 * 185.76686 * 8 6 5 23 23 H 1.08997 * 109.88537 * 300.44220 * 22 8 6 24 24 C 1.53002 * 109.88204 * 61.60823 * 22 8 6 25 25 S 1.75825 * 109.08631 * 359.53573 * 5 4 3 26 26 C 1.33813 * 122.44948 * 84.99519 * 3 2 1 27 27 C 1.50706 * 124.52200 * 0.05126 * 26 3 2 28 28 H 1.08995 * 109.46953 * 60.00020 * 1 2 3 29 29 H 1.08998 * 109.46567 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47112 * 299.99992 * 1 2 3 31 31 H 1.08998 * 109.47553 * 240.00255 * 2 1 3 32 32 H 1.09000 * 109.47635 * 119.99948 * 2 1 3 33 33 H 1.08001 * 123.34715 * 359.97438 * 4 3 2 34 34 H 1.08998 * 110.36594 * 37.07237 * 9 8 6 35 35 H 1.08994 * 110.36862 * 274.74145 * 9 8 6 36 36 H 1.08997 * 111.00623 * 278.93628 * 10 9 8 37 37 H 1.08998 * 111.03707 * 155.09855 * 10 9 8 38 38 H 0.97003 * 119.99774 * 330.09435 * 13 11 10 39 39 H 0.97002 * 119.99689 * 179.97438 * 17 16 14 40 40 H 1.09011 * 109.47305 * 172.78825 * 24 22 8 41 41 H 1.08996 * 109.47400 * 292.79388 * 24 22 8 42 42 H 1.08999 * 109.46980 * 52.79458 * 24 22 8 43 43 H 1.09006 * 109.47044 * 179.97438 * 27 26 3 44 44 H 1.09003 * 109.46766 * 299.99154 * 27 26 3 45 45 H 1.09000 * 109.47321 * 59.99803 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3675 2.0848 -1.1562 5 6 2.8045 3.3611 -0.9392 6 6 3.2329 4.3015 -1.9788 7 8 3.1113 4.0070 -3.1533 8 7 3.7615 5.4924 -1.6339 9 6 4.0752 5.9278 -0.2608 10 6 5.1730 7.0080 -0.4285 11 6 4.7093 7.7248 -1.7241 12 1 5.5556 8.1844 -2.2345 13 7 3.6821 8.7254 -1.4237 14 6 3.5667 9.8439 -2.2050 15 1 4.2330 9.9888 -3.0425 16 6 2.5931 10.7916 -1.9207 17 7 1.7813 10.6153 -0.8998 18 14 2.4361 12.3179 -2.9862 19 1 3.2946 13.3970 -2.4349 20 1 2.8673 12.0012 -4.3714 21 1 1.0213 12.7691 -2.9992 22 6 4.1199 6.5726 -2.5646 23 1 4.8632 6.2161 -3.2777 24 6 2.8721 7.0553 -3.3068 25 16 2.7636 3.6973 0.7862 26 6 2.1788 2.1306 1.1249 27 6 1.8693 1.6148 2.5067 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.2961 1.6404 -2.1380 34 1 4.4534 5.0905 0.3256 35 1 3.1915 6.3554 0.2128 36 1 6.1532 6.5511 -0.5642 37 1 5.1783 7.6951 0.4176 38 1 3.0838 8.5954 -0.6713 39 1 1.1012 11.2778 -0.7009 40 1 3.1193 7.9373 -3.8978 41 1 2.5129 6.2651 -3.9660 42 1 2.0951 7.3077 -2.5852 43 1 2.0768 2.3938 3.2403 44 1 0.8176 1.3337 2.5623 45 1 2.4899 0.7437 2.7168 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987486560.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:00 Heat of formation + Delta-G solvation = 1.997261 kcal Electronic energy + Delta-G solvation = -25371.129780 eV Core-core repulsion = 21901.167576 eV Total energy + Delta-G solvation = -3469.962204 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.93650 -38.83052 -37.24834 -34.03993 -32.99902 -31.80905 -31.42302 -30.74776 -29.01878 -26.95803 -25.32482 -24.06407 -23.74625 -23.27688 -21.86292 -20.05940 -18.94138 -18.21722 -17.80905 -17.27141 -16.05988 -15.94504 -15.28229 -14.68766 -14.56377 -14.29883 -14.05567 -13.84693 -13.56173 -13.48182 -13.38348 -12.93312 -12.89477 -12.62426 -12.59031 -12.48504 -12.11350 -11.77783 -11.57787 -11.48030 -11.35391 -11.14360 -10.94412 -10.87660 -10.79389 -10.63708 -10.31951 -10.17372 -10.05230 -9.72810 -9.61742 -8.98572 -8.69807 -8.39106 -8.19911 -7.06602 -5.83776 -3.13312 0.56309 1.50742 1.92855 2.35306 3.26148 3.40289 3.43646 3.46644 3.47525 4.53228 4.62469 4.63951 4.86393 4.90842 4.93099 5.08783 5.15391 5.24752 5.29335 5.35497 5.46813 5.48964 5.54549 5.61761 5.66159 5.68352 5.71755 5.75661 5.81056 5.95416 6.02781 6.07078 6.20446 6.24585 6.29527 6.41448 6.43609 6.54460 6.63626 6.81455 7.03065 7.32451 7.64419 7.84426 8.33258 8.42666 9.45715 9.98915 10.34309 11.38204 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.020806 B = 0.003174 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.463633 B = 8820.132543 C = 8998.385866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.062 4.062 3 C -0.122 4.122 4 C -0.055 4.055 5 C -0.257 4.257 6 C 0.599 3.401 7 O -0.537 6.537 8 N -0.600 5.600 9 C 0.090 3.910 10 C -0.140 4.140 11 C 0.171 3.829 12 H 0.078 0.922 13 N -0.708 5.708 14 C -0.241 4.241 15 H 0.072 0.928 16 C -0.008 4.008 17 N -0.929 5.929 18 Si 0.905 3.095 19 H -0.290 1.290 20 H -0.281 1.281 21 H -0.292 1.292 22 C 0.110 3.890 23 H 0.063 0.937 24 C -0.133 4.133 25 S 0.222 5.778 26 C -0.221 4.221 27 C -0.080 4.080 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.148 0.852 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.089 0.911 38 H 0.385 0.615 39 H 0.256 0.744 40 H 0.071 0.929 41 H 0.037 0.963 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.075 0.925 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.529 -19.413 7.463 20.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.101 4.101 3 C -0.135 4.135 4 C -0.088 4.088 5 C -0.377 4.377 6 C 0.387 3.613 7 O -0.417 6.417 8 N -0.333 5.333 9 C -0.034 4.034 10 C -0.180 4.180 11 C 0.058 3.942 12 H 0.096 0.904 13 N -0.348 5.348 14 C -0.372 4.372 15 H 0.090 0.910 16 C -0.205 4.205 17 N -0.577 5.577 18 Si 0.736 3.264 19 H -0.217 1.217 20 H -0.207 1.207 21 H -0.218 1.218 22 C 0.005 3.995 23 H 0.081 0.919 24 C -0.191 4.191 25 S 0.492 5.508 26 C -0.340 4.340 27 C -0.139 4.139 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.166 0.834 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.108 0.892 38 H 0.219 0.781 39 H 0.066 0.934 40 H 0.090 0.910 41 H 0.056 0.944 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.094 0.906 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.789 -18.164 7.616 19.892 hybrid contribution -0.846 -0.474 -1.123 1.483 sum 1.944 -18.638 6.493 19.832 Atomic orbital electron populations 1.21732 0.94916 1.01456 1.02344 1.20205 0.95903 0.91439 1.02549 1.18570 1.05167 0.98321 0.91414 1.20523 0.96724 0.92000 0.99563 1.24587 1.15765 1.00171 0.97179 1.16560 0.77662 0.79902 0.87130 1.90788 1.56673 1.76140 1.18093 1.48467 1.61464 1.14416 1.08974 1.22450 0.99520 0.97644 0.83789 1.23140 0.96881 0.97057 1.00888 1.21258 0.92337 0.88303 0.92270 0.90437 1.42335 1.37020 1.20177 1.35225 1.19189 1.13318 0.96623 1.08024 0.91000 1.24722 0.98409 0.98961 0.98382 1.69652 1.22099 1.36316 1.29639 0.86224 0.76917 0.83350 0.79891 1.21719 1.20686 1.21824 1.22775 0.97754 0.86898 0.92093 0.91928 1.21769 0.97434 0.99824 1.00060 1.83488 1.58903 1.09397 0.98969 1.24388 1.08026 1.01511 1.00101 1.20323 1.02307 1.01141 0.90086 0.92424 0.92509 0.92663 0.91111 0.91206 0.83423 0.91087 0.90582 0.90819 0.89200 0.78067 0.93441 0.91028 0.94377 0.91671 0.91470 0.90599 0.90676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.89 37.16 0.37 -0.82 16 2 C -0.06 -0.53 5.83 -27.88 -0.16 -0.70 16 3 C -0.12 -1.39 5.04 -106.45 -0.54 -1.93 16 4 C -0.05 -0.75 9.79 -40.43 -0.40 -1.15 16 5 C -0.26 -3.92 6.34 -36.79 -0.23 -4.15 16 6 C 0.60 10.99 7.55 -12.89 -0.10 10.89 16 7 O -0.54 -11.41 16.21 5.19 0.08 -11.33 16 8 N -0.60 -10.47 3.06 -164.58 -0.50 -10.97 16 9 C 0.09 1.34 5.20 -2.53 -0.01 1.32 16 10 C -0.14 -2.06 6.69 -24.58 -0.16 -2.23 16 11 C 0.17 3.15 3.52 -66.09 -0.23 2.91 16 12 H 0.08 1.40 8.06 -51.93 -0.42 0.98 16 13 N -0.71 -16.18 3.88 -51.65 -0.20 -16.38 16 14 C -0.24 -6.19 8.48 -15.06 -0.13 -6.31 16 15 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 16 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 17 N -0.93 -26.79 13.06 55.49 0.72 -26.06 16 18 Si 0.91 21.72 29.55 -169.99 -5.02 16.69 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 22 C 0.11 2.06 3.41 -66.95 -0.23 1.83 16 23 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 24 C -0.13 -2.80 8.05 37.16 0.30 -2.50 16 25 S 0.22 2.71 18.61 -107.50 -2.00 0.71 16 26 C -0.22 -2.40 6.28 -35.86 -0.23 -2.63 16 27 C -0.08 -0.62 9.44 36.01 0.34 -0.28 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.44 7.41 -51.93 -0.38 0.06 16 31 H 0.07 0.58 8.11 -51.93 -0.42 0.16 16 32 H 0.07 0.52 7.45 -51.93 -0.39 0.13 16 33 H 0.15 1.98 8.06 -52.49 -0.42 1.56 16 34 H 0.07 0.90 5.79 -39.70 -0.23 0.67 16 35 H 0.08 1.19 7.93 -51.93 -0.41 0.78 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.39 9.46 7.84 -40.82 -0.32 9.14 16 39 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 40 H 0.07 1.56 7.17 -51.92 -0.37 1.19 16 41 H 0.04 0.80 7.25 -51.93 -0.38 0.43 16 42 H 0.06 1.53 7.62 -51.93 -0.40 1.13 16 43 H 0.07 0.47 8.11 -51.93 -0.42 0.05 16 44 H 0.08 0.53 7.41 -51.93 -0.38 0.15 16 45 H 0.07 0.49 7.92 -51.93 -0.41 0.08 16 LS Contribution 369.68 15.07 5.57 5.57 Total: -1.00 -30.50 369.68 -9.87 -40.38 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -7.02 Total: 7.46 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: -1.51 Total: -6.06 kcal Atomic # 7 Polarization: -53.43 SS G_CDS: 0.02 Total: -53.41 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: 0.08 Total: -11.33 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: 2.71 SS G_CDS: -2.00 Total: 0.71 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.50 -9.87 -40.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987486560.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.374 kcal (2) G-P(sol) polarization free energy of solvation -30.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds