Wall clock time and date at job start Tue Mar 31 2020 13:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50707 * 109.47193 * 2 1 4 4 C 1.37477 * 122.45054 * 265.31965 * 3 2 1 5 5 C 1.36645 * 113.29394 * 180.19691 * 4 3 2 6 6 C 1.46585 * 125.45226 * 179.79658 * 5 4 3 7 7 O 1.21696 * 120.00192 * 6.16299 * 6 5 4 8 8 N 1.34776 * 119.99578 * 186.15820 * 6 5 4 9 9 C 1.47422 * 125.64861 * 5.72660 * 8 6 5 10 10 C 1.54915 * 104.82960 * 155.90514 * 9 8 6 11 11 C 1.55161 * 101.58103 * 37.01184 * 10 9 8 12 12 H 1.08994 * 110.71941 * 205.95649 * 11 10 9 13 13 N 1.46504 * 110.72102 * 82.86075 * 11 10 9 14 14 C 1.36933 * 119.99975 * 150.09638 * 13 11 10 15 15 H 1.08001 * 120.00147 * 359.97438 * 14 13 11 16 16 C 1.38805 * 119.99738 * 179.97438 * 14 13 11 17 17 N 1.31620 * 120.00223 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 119.99702 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47168 * 269.99922 * 18 16 14 20 20 H 1.48494 * 109.47315 * 30.00635 * 18 16 14 21 21 H 1.48502 * 109.46934 * 150.00439 * 18 16 14 22 22 C 1.47020 * 125.64581 * 185.76686 * 8 6 5 23 23 H 1.08997 * 109.88537 * 300.44220 * 22 8 6 24 24 C 1.53002 * 109.88204 * 61.60823 * 22 8 6 25 25 S 1.75825 * 109.08631 * 359.53573 * 5 4 3 26 26 C 1.33813 * 122.44948 * 84.99519 * 3 2 1 27 27 C 1.50706 * 124.52200 * 0.05126 * 26 3 2 28 28 H 1.08995 * 109.46953 * 60.00020 * 1 2 3 29 29 H 1.08998 * 109.46567 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47112 * 299.99992 * 1 2 3 31 31 H 1.08998 * 109.47553 * 240.00255 * 2 1 3 32 32 H 1.09000 * 109.47635 * 119.99948 * 2 1 3 33 33 H 1.08001 * 123.34715 * 359.97438 * 4 3 2 34 34 H 1.08998 * 110.36594 * 37.07237 * 9 8 6 35 35 H 1.08994 * 110.36862 * 274.74145 * 9 8 6 36 36 H 1.08997 * 111.00623 * 278.93628 * 10 9 8 37 37 H 1.08998 * 111.03707 * 155.09855 * 10 9 8 38 38 H 0.97003 * 119.99774 * 330.09435 * 13 11 10 39 39 H 0.97002 * 119.99689 * 179.97438 * 17 16 14 40 40 H 1.09011 * 109.47305 * 172.78825 * 24 22 8 41 41 H 1.08996 * 109.47400 * 292.79388 * 24 22 8 42 42 H 1.08999 * 109.46980 * 52.79458 * 24 22 8 43 43 H 1.09006 * 109.47044 * 179.97438 * 27 26 3 44 44 H 1.09003 * 109.46766 * 299.99154 * 27 26 3 45 45 H 1.09000 * 109.47321 * 59.99803 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3675 2.0848 -1.1562 5 6 2.8045 3.3611 -0.9392 6 6 3.2329 4.3015 -1.9788 7 8 3.1113 4.0070 -3.1533 8 7 3.7615 5.4924 -1.6339 9 6 4.0752 5.9278 -0.2608 10 6 5.1730 7.0080 -0.4285 11 6 4.7093 7.7248 -1.7241 12 1 5.5556 8.1844 -2.2345 13 7 3.6821 8.7254 -1.4237 14 6 3.5667 9.8439 -2.2050 15 1 4.2330 9.9888 -3.0425 16 6 2.5931 10.7916 -1.9207 17 7 1.7813 10.6153 -0.8998 18 14 2.4361 12.3179 -2.9862 19 1 3.2946 13.3970 -2.4349 20 1 2.8673 12.0012 -4.3714 21 1 1.0213 12.7691 -2.9992 22 6 4.1199 6.5726 -2.5646 23 1 4.8632 6.2161 -3.2777 24 6 2.8721 7.0553 -3.3068 25 16 2.7636 3.6973 0.7862 26 6 2.1788 2.1306 1.1249 27 6 1.8693 1.6148 2.5067 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.2961 1.6404 -2.1380 34 1 4.4534 5.0905 0.3256 35 1 3.1915 6.3554 0.2128 36 1 6.1532 6.5511 -0.5642 37 1 5.1783 7.6951 0.4176 38 1 3.0838 8.5954 -0.6713 39 1 1.1012 11.2778 -0.7009 40 1 3.1193 7.9373 -3.8978 41 1 2.5129 6.2651 -3.9660 42 1 2.0951 7.3077 -2.5852 43 1 2.0768 2.3938 3.2403 44 1 0.8176 1.3337 2.5623 45 1 2.4899 0.7437 2.7168 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987486560.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:59 Heat of formation + Delta-G solvation = -15.045470 kcal Electronic energy + Delta-G solvation = -25371.868809 eV Core-core repulsion = 21901.167576 eV Total energy + Delta-G solvation = -3470.701232 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.32853 -39.83777 -38.66333 -35.80153 -33.98724 -33.23931 -32.47301 -32.14885 -30.68540 -27.96194 -26.93383 -25.38329 -24.83401 -24.64993 -23.07488 -21.33089 -20.26961 -19.44026 -19.22779 -18.78130 -17.44985 -17.08358 -16.55585 -16.43840 -15.57778 -15.49497 -15.32261 -15.13732 -15.06016 -14.73615 -14.56245 -14.17722 -14.00444 -13.96503 -13.56145 -13.26911 -13.21152 -13.10220 -12.86429 -12.79731 -12.62400 -12.48484 -12.39791 -12.30172 -12.22469 -11.99976 -11.82974 -11.76598 -11.54535 -11.26145 -11.12434 -10.91870 -9.89483 -9.45022 -9.32631 -9.00175 -7.90836 -5.18013 -0.48500 0.49960 0.96232 1.33543 1.49143 1.50562 1.57456 1.91701 2.13881 2.58041 3.36647 3.51818 3.61890 3.85868 3.87694 4.01130 4.10081 4.17324 4.18237 4.33690 4.40572 4.46656 4.50890 4.52478 4.62877 4.66747 4.70357 4.77371 4.80483 4.93211 4.96869 4.97904 5.06719 5.10706 5.15135 5.20045 5.23240 5.33193 5.43531 5.47136 5.49176 5.57466 5.59024 6.30074 6.46971 7.02316 7.38575 8.10047 8.34522 9.32016 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.020806 B = 0.003174 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.463633 B = 8820.132543 C = 8998.385866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.059 4.059 3 C -0.134 4.134 4 C -0.050 4.050 5 C -0.300 4.300 6 C 0.594 3.406 7 O -0.581 6.581 8 N -0.603 5.603 9 C 0.091 3.909 10 C -0.126 4.126 11 C 0.165 3.835 12 H 0.086 0.914 13 N -0.716 5.716 14 C -0.226 4.226 15 H 0.078 0.922 16 C -0.069 4.069 17 N -0.965 5.965 18 Si 0.961 3.039 19 H -0.287 1.287 20 H -0.273 1.273 21 H -0.303 1.303 22 C 0.114 3.886 23 H 0.069 0.931 24 C -0.117 4.117 25 S 0.240 5.760 26 C -0.204 4.204 27 C -0.084 4.084 28 H 0.039 0.961 29 H 0.074 0.926 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.140 0.860 34 H 0.099 0.901 35 H 0.066 0.934 36 H 0.105 0.895 37 H 0.096 0.904 38 H 0.375 0.625 39 H 0.248 0.752 40 H 0.059 0.941 41 H 0.028 0.972 42 H 0.035 0.965 43 H 0.076 0.924 44 H 0.089 0.911 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.610 -21.237 9.301 23.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.098 4.098 3 C -0.146 4.146 4 C -0.085 4.085 5 C -0.420 4.420 6 C 0.384 3.616 7 O -0.463 6.463 8 N -0.334 5.334 9 C -0.032 4.032 10 C -0.165 4.165 11 C 0.054 3.946 12 H 0.104 0.896 13 N -0.354 5.354 14 C -0.358 4.358 15 H 0.095 0.905 16 C -0.262 4.262 17 N -0.616 5.616 18 Si 0.791 3.209 19 H -0.214 1.214 20 H -0.198 1.198 21 H -0.230 1.230 22 C 0.008 3.992 23 H 0.087 0.913 24 C -0.175 4.175 25 S 0.511 5.489 26 C -0.324 4.324 27 C -0.142 4.142 28 H 0.059 0.941 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.109 0.891 33 H 0.158 0.842 34 H 0.116 0.884 35 H 0.084 0.916 36 H 0.123 0.877 37 H 0.114 0.886 38 H 0.208 0.792 39 H 0.057 0.943 40 H 0.078 0.922 41 H 0.048 0.952 42 H 0.054 0.946 43 H 0.095 0.905 44 H 0.107 0.893 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.922 -20.004 9.456 22.472 hybrid contribution -1.182 -0.057 -1.671 2.048 sum 2.740 -20.061 7.785 21.693 Atomic orbital electron populations 1.21728 0.94543 1.02443 1.01612 1.20275 0.96117 0.89717 1.03736 1.18779 1.05473 0.99750 0.90567 1.20715 0.95719 0.91724 1.00335 1.24370 1.18825 1.00377 0.98431 1.17031 0.76927 0.80276 0.87375 1.90744 1.58449 1.77154 1.19999 1.48488 1.61304 1.13914 1.09723 1.22571 0.99337 0.98663 0.82650 1.23088 0.98107 0.96529 0.98726 1.21466 0.91279 0.87412 0.94421 0.89585 1.42434 1.37945 1.20450 1.34529 1.19513 1.12055 0.96769 1.07493 0.90453 1.25377 0.99066 1.01800 0.99916 1.69789 1.23138 1.37089 1.31561 0.85322 0.76030 0.80594 0.78914 1.21433 1.19822 1.23006 1.22580 0.96520 0.87643 0.92461 0.91271 1.21572 0.97831 0.98989 0.99152 1.83271 1.58967 1.10394 0.96302 1.24854 1.05607 1.00285 1.01610 1.20516 1.03521 1.02176 0.87956 0.94143 0.90696 0.92413 0.90880 0.89102 0.84181 0.88386 0.91615 0.87705 0.88602 0.79237 0.94287 0.92167 0.95249 0.94570 0.90475 0.89270 0.88589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.89 71.98 0.71 -1.33 16 2 C -0.06 -0.87 5.83 29.85 0.17 -0.70 16 3 C -0.13 -2.80 5.04 -21.05 -0.11 -2.91 16 4 C -0.05 -1.37 9.79 21.72 0.21 -1.16 16 5 C -0.30 -9.13 6.34 24.08 0.15 -8.98 16 6 C 0.59 22.19 7.55 86.42 0.65 22.84 16 7 O -0.58 -25.63 16.21 -4.33 -0.07 -25.70 16 8 N -0.60 -20.98 3.06 -792.83 -2.43 -23.41 16 9 C 0.09 2.58 5.20 86.86 0.45 3.03 16 10 C -0.13 -3.42 6.69 31.99 0.21 -3.20 16 11 C 0.17 5.92 3.52 46.18 0.16 6.08 16 12 H 0.09 2.96 8.06 -2.39 -0.02 2.94 16 13 N -0.72 -32.77 3.88 -317.33 -1.23 -34.00 16 14 C -0.23 -11.67 8.48 84.03 0.71 -10.96 16 15 H 0.08 3.84 7.83 -2.91 -0.02 3.82 16 16 C -0.07 -3.80 5.50 84.86 0.47 -3.33 16 17 N -0.97 -56.87 13.06 21.65 0.28 -56.58 16 18 Si 0.96 45.21 29.55 68.60 2.03 47.24 16 19 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 20 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 21 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 22 C 0.11 4.26 3.41 45.34 0.15 4.41 16 23 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 24 C -0.12 -5.11 8.05 71.98 0.58 -4.53 16 25 S 0.24 5.45 18.61 -56.49 -1.05 4.40 16 26 C -0.20 -3.87 6.28 24.68 0.15 -3.72 16 27 C -0.08 -0.96 9.44 71.24 0.67 -0.29 16 28 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.06 0.77 7.41 -2.39 -0.02 0.75 16 31 H 0.07 1.05 8.11 -2.39 -0.02 1.03 16 32 H 0.09 0.98 7.45 -2.39 -0.02 0.96 16 33 H 0.14 3.89 8.06 -2.91 -0.02 3.87 16 34 H 0.10 2.26 5.79 -10.17 -0.06 2.20 16 35 H 0.07 2.02 7.93 -2.39 -0.02 2.01 16 36 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 38 H 0.38 18.69 7.84 -92.71 -0.73 17.96 16 39 H 0.25 14.42 8.31 -92.71 -0.77 13.64 16 40 H 0.06 2.70 7.17 -2.38 -0.02 2.68 16 41 H 0.03 1.29 7.25 -2.39 -0.02 1.27 16 42 H 0.04 1.75 7.62 -2.39 -0.02 1.73 16 43 H 0.08 0.78 8.11 -2.38 -0.02 0.76 16 44 H 0.09 0.87 7.41 -2.39 -0.02 0.86 16 45 H 0.10 0.79 7.92 -2.39 -0.02 0.77 16 Total: -1.00 -68.02 369.68 3.11 -64.91 By element: Atomic # 1 Polarization: 27.66 SS G_CDS: 0.22 Total: 27.87 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: 5.37 Total: -4.72 kcal Atomic # 7 Polarization: -110.62 SS G_CDS: -3.38 Total: -114.00 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: -0.07 Total: -25.70 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Atomic # 16 Polarization: 5.45 SS G_CDS: -1.05 Total: 4.40 kcal Total: -68.02 3.11 -64.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987486560.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.863 kcal (2) G-P(sol) polarization free energy of solvation -68.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds