Wall clock time and date at job start Tue Mar 31 2020 13:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50702 * 109.47030 * 2 1 4 4 C 1.37479 * 122.44713 * 264.97788 * 3 2 1 5 5 C 1.36644 * 113.29587 * 180.02562 * 4 3 2 6 6 C 1.46584 * 125.45845 * 180.02562 * 5 4 3 7 7 O 1.21701 * 120.00106 * 6.23246 * 6 5 4 8 8 N 1.34776 * 119.99972 * 186.23907 * 6 5 4 9 9 C 1.47424 * 125.64799 * 5.30720 * 8 6 5 10 10 C 1.55135 * 104.72191 * 155.82117 * 9 8 6 11 11 C 1.55154 * 101.48377 * 37.29494 * 10 9 8 12 12 H 1.09004 * 110.72211 * 82.69872 * 11 10 9 13 13 N 1.46502 * 110.71961 * 205.96883 * 11 10 9 14 14 C 1.36938 * 119.99996 * 268.52474 * 13 11 10 15 15 H 1.08003 * 120.00115 * 359.97438 * 14 13 11 16 16 C 1.38814 * 119.99790 * 179.97438 * 14 13 11 17 17 N 1.31614 * 120.00284 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99809 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47110 * 59.99620 * 18 16 14 20 20 H 1.48492 * 109.46959 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.46735 * 299.99927 * 18 16 14 22 22 C 1.47018 * 125.64878 * 185.62065 * 8 6 5 23 23 H 1.09004 * 109.88290 * 300.59018 * 22 8 6 24 24 C 1.52997 * 109.88442 * 61.59788 * 22 8 6 25 25 S 1.75837 * 109.08247 * 359.97438 * 5 4 3 26 26 C 1.33814 * 122.44901 * 84.97741 * 3 2 1 27 27 C 1.50695 * 124.52518 * 0.03641 * 26 3 2 28 28 H 1.09007 * 109.46840 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47093 * 299.99544 * 1 2 3 30 30 H 1.08988 * 109.47426 * 60.00237 * 1 2 3 31 31 H 1.09003 * 109.46816 * 239.99988 * 2 1 3 32 32 H 1.09004 * 109.47432 * 120.00059 * 2 1 3 33 33 H 1.08003 * 123.35237 * 359.97438 * 4 3 2 34 34 H 1.08998 * 110.36624 * 274.74912 * 9 8 6 35 35 H 1.08991 * 110.36953 * 37.07224 * 9 8 6 36 36 H 1.08998 * 111.19098 * 279.18915 * 10 9 8 37 37 H 1.09006 * 110.93828 * 155.28733 * 10 9 8 38 38 H 0.97004 * 120.00129 * 88.52163 * 13 11 10 39 39 H 0.96997 * 120.00510 * 179.97438 * 17 16 14 40 40 H 1.09004 * 109.47173 * 58.55165 * 24 22 8 41 41 H 1.09001 * 109.47521 * 178.54586 * 24 22 8 42 42 H 1.08999 * 109.47524 * 298.54819 * 24 22 8 43 43 H 1.08997 * 109.47072 * 179.97438 * 27 26 3 44 44 H 1.09001 * 109.47088 * 299.98401 * 27 26 3 45 45 H 1.09005 * 109.47181 * 59.98377 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3739 2.0824 -1.1557 5 6 2.8061 3.3605 -0.9392 6 6 3.2350 4.3007 -1.9788 7 8 3.1170 4.0046 -3.1533 8 7 3.7602 5.4931 -1.6339 9 6 4.0615 5.9341 -0.2598 10 6 5.1635 7.0135 -0.4249 11 6 4.7049 7.7268 -1.7242 12 1 3.9384 8.4705 -1.5059 13 7 5.8453 8.3413 -2.4083 14 6 6.1867 9.6398 -2.1392 15 1 5.6149 10.2112 -1.4230 16 6 7.2676 10.2218 -2.7871 17 7 7.9648 9.5255 -3.6596 18 14 7.7337 11.9931 -2.4195 19 1 8.0636 12.1292 -0.9781 20 1 8.9140 12.3740 -3.2361 21 1 6.5934 12.8842 -2.7526 22 6 4.1213 6.5719 -2.5651 23 1 4.8665 6.2143 -3.2756 24 6 2.8763 7.0511 -3.3143 25 16 2.7641 3.6970 0.7862 26 6 2.1784 2.1307 1.1249 27 6 1.8682 1.6152 2.5065 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 2.3080 1.6361 -2.1370 34 1 3.1735 6.3631 0.2043 35 1 4.4347 5.0993 0.3333 36 1 6.1451 6.5578 -0.5550 37 1 5.1636 7.7024 0.4198 38 1 6.3587 7.8282 -3.0519 39 1 8.7199 9.9322 -4.1126 40 1 2.1328 7.3999 -2.5976 41 1 3.1469 7.8678 -3.9835 42 1 2.4623 6.2271 -3.8954 43 1 2.0755 2.3943 3.2400 44 1 0.8164 1.3345 2.5619 45 1 2.4884 0.7438 2.7170 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987486563.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:04 Heat of formation + Delta-G solvation = -1.406579 kcal Electronic energy + Delta-G solvation = -24926.084275 eV Core-core repulsion = 21455.974470 eV Total energy + Delta-G solvation = -3470.109805 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.04640 -38.91176 -37.27004 -34.17554 -33.11834 -31.94171 -31.49477 -30.93416 -29.27222 -27.11902 -25.29507 -24.15809 -23.85472 -23.04810 -21.89742 -20.24242 -19.37362 -18.32480 -17.80788 -17.26112 -16.16322 -16.09591 -15.41117 -14.82878 -14.58584 -14.45758 -14.20896 -13.84691 -13.58044 -13.51386 -13.42162 -13.06081 -12.90185 -12.78250 -12.57688 -12.25345 -12.19997 -12.08539 -11.79708 -11.72506 -11.58837 -11.22298 -11.21125 -11.05438 -10.89077 -10.62873 -10.57064 -10.28591 -10.07378 -9.84559 -9.70114 -8.97812 -8.81013 -8.49871 -8.36682 -7.06277 -5.83296 -3.14189 0.44844 1.39156 1.81193 2.24994 3.07257 3.29627 3.40379 3.45166 3.46276 4.50728 4.53083 4.54510 4.77475 4.82659 4.93384 4.99848 5.07341 5.19221 5.22282 5.29370 5.38304 5.39830 5.43335 5.51436 5.53908 5.61032 5.64133 5.66837 5.75338 5.81899 5.92972 5.94511 6.05391 6.09756 6.19617 6.25058 6.32426 6.42363 6.53965 6.58781 6.70859 6.87838 7.63050 7.67680 8.26847 8.33829 9.45214 9.99080 10.33966 11.38677 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.029159 B = 0.002734 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.032315 B =10238.040451 C =10798.282350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.063 4.063 3 C -0.122 4.122 4 C -0.052 4.052 5 C -0.258 4.258 6 C 0.601 3.399 7 O -0.533 6.533 8 N -0.605 5.605 9 C 0.086 3.914 10 C -0.150 4.150 11 C 0.178 3.822 12 H 0.069 0.931 13 N -0.713 5.713 14 C -0.246 4.246 15 H 0.072 0.928 16 C -0.009 4.009 17 N -0.929 5.929 18 Si 0.909 3.091 19 H -0.285 1.285 20 H -0.291 1.291 21 H -0.285 1.285 22 C 0.127 3.873 23 H 0.080 0.920 24 C -0.154 4.154 25 S 0.217 5.783 26 C -0.219 4.219 27 C -0.081 4.081 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.149 0.851 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.386 0.614 39 H 0.257 0.743 40 H 0.051 0.949 41 H 0.072 0.928 42 H 0.059 0.941 43 H 0.066 0.934 44 H 0.076 0.924 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.272 -17.180 12.750 25.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.102 4.102 3 C -0.134 4.134 4 C -0.085 4.085 5 C -0.378 4.378 6 C 0.389 3.611 7 O -0.412 6.412 8 N -0.338 5.338 9 C -0.038 4.038 10 C -0.192 4.192 11 C 0.065 3.935 12 H 0.087 0.913 13 N -0.353 5.353 14 C -0.377 4.377 15 H 0.090 0.910 16 C -0.206 4.206 17 N -0.577 5.577 18 Si 0.740 3.260 19 H -0.212 1.212 20 H -0.217 1.217 21 H -0.212 1.212 22 C 0.024 3.976 23 H 0.098 0.902 24 C -0.212 4.212 25 S 0.488 5.512 26 C -0.338 4.338 27 C -0.139 4.139 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.167 0.833 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.221 0.779 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.091 0.909 42 H 0.078 0.922 43 H 0.085 0.915 44 H 0.094 0.906 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -13.951 -15.917 13.034 24.857 hybrid contribution 0.171 -0.514 -0.797 0.964 sum -13.780 -16.431 12.237 24.691 Atomic orbital electron populations 1.21727 0.94904 1.01524 1.02233 1.20218 0.95898 0.91391 1.02704 1.18583 1.05064 0.98369 0.91400 1.20552 0.96373 0.91877 0.99673 1.24518 1.16029 1.00222 0.97048 1.16561 0.77596 0.79750 0.87200 1.90810 1.56509 1.75885 1.18042 1.48402 1.61884 1.14484 1.09061 1.22597 0.99490 0.98409 0.83351 1.23615 0.97371 0.96506 1.01702 1.21239 0.91042 0.91431 0.89741 0.91272 1.42343 1.31611 1.12254 1.49084 1.19164 1.10308 0.88372 1.19836 0.90997 1.24774 0.98373 0.98367 0.99058 1.69651 1.21569 1.36366 1.30083 0.86251 0.77697 0.84584 0.77515 1.21181 1.21678 1.21167 1.21999 0.97138 0.86695 0.91785 0.90162 1.22044 0.97067 1.01684 1.00435 1.83426 1.59075 1.09712 0.99009 1.24395 1.07691 1.01590 1.00112 1.20329 1.02323 1.01229 0.90027 0.92455 0.92713 0.92456 0.91007 0.91134 0.83294 0.91093 0.90877 0.90397 0.90245 0.77908 0.93273 0.93033 0.90861 0.92162 0.91480 0.90576 0.90572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.89 37.16 0.37 -0.65 16 2 C -0.06 -0.49 5.83 -27.88 -0.16 -0.65 16 3 C -0.12 -1.25 5.04 -106.45 -0.54 -1.79 16 4 C -0.05 -0.65 9.79 -40.43 -0.40 -1.04 16 5 C -0.26 -3.59 6.34 -36.79 -0.23 -3.83 16 6 C 0.60 10.24 7.55 -12.89 -0.10 10.14 16 7 O -0.53 -10.70 16.10 5.19 0.08 -10.61 16 8 N -0.61 -9.87 3.06 -164.44 -0.50 -10.38 16 9 C 0.09 1.18 5.29 -2.41 -0.01 1.17 16 10 C -0.15 -2.44 6.78 -24.46 -0.17 -2.61 16 11 C 0.18 3.37 3.14 -66.10 -0.21 3.16 16 12 H 0.07 1.30 7.80 -51.93 -0.41 0.90 16 13 N -0.71 -17.14 5.22 -51.65 -0.27 -17.41 16 14 C -0.25 -6.52 9.96 -15.06 -0.15 -6.67 16 15 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 16 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 17 N -0.93 -27.50 13.06 55.49 0.72 -26.77 16 18 Si 0.91 21.78 29.55 -169.99 -5.02 16.75 16 19 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 22 C 0.13 2.30 3.18 -66.96 -0.21 2.09 16 23 H 0.08 1.63 7.72 -51.93 -0.40 1.23 16 24 C -0.15 -2.62 9.11 37.16 0.34 -2.28 16 25 S 0.22 2.32 18.60 -107.50 -2.00 0.32 16 26 C -0.22 -2.11 6.28 -35.86 -0.23 -2.33 16 27 C -0.08 -0.54 9.44 36.00 0.34 -0.20 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.05 0.37 7.41 -51.93 -0.38 -0.02 16 30 H 0.06 0.45 8.14 -51.94 -0.42 0.02 16 31 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 32 H 0.07 0.47 7.45 -51.93 -0.39 0.08 16 33 H 0.15 1.85 8.06 -52.48 -0.42 1.42 16 34 H 0.07 0.85 7.95 -51.93 -0.41 0.44 16 35 H 0.07 0.91 5.74 -38.78 -0.22 0.68 16 36 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 37 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.39 10.08 7.57 -40.82 -0.31 9.77 16 39 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 42 H 0.06 1.06 7.07 -51.93 -0.37 0.69 16 43 H 0.07 0.39 8.11 -51.93 -0.42 -0.03 16 44 H 0.08 0.44 7.41 -51.93 -0.38 0.05 16 45 H 0.08 0.44 7.92 -51.93 -0.41 0.03 16 LS Contribution 373.33 15.07 5.63 5.63 Total: -1.00 -31.02 373.33 -9.84 -40.87 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -7.03 Total: 7.45 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: -1.45 Total: -5.84 kcal Atomic # 7 Polarization: -54.51 SS G_CDS: -0.05 Total: -54.56 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.08 Total: -10.61 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: 2.32 SS G_CDS: -2.00 Total: 0.32 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.02 -9.84 -40.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987486563.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.462 kcal (2) G-P(sol) polarization free energy of solvation -31.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds