Wall clock time and date at job start Tue Mar 31 2020 13:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50702 * 109.47030 * 2 1 4 4 C 1.37479 * 122.44713 * 264.97788 * 3 2 1 5 5 C 1.36644 * 113.29587 * 180.02562 * 4 3 2 6 6 C 1.46584 * 125.45845 * 180.02562 * 5 4 3 7 7 O 1.21701 * 120.00106 * 6.23246 * 6 5 4 8 8 N 1.34776 * 119.99972 * 186.23907 * 6 5 4 9 9 C 1.47424 * 125.64799 * 5.30720 * 8 6 5 10 10 C 1.55135 * 104.72191 * 155.82117 * 9 8 6 11 11 C 1.55154 * 101.48377 * 37.29494 * 10 9 8 12 12 H 1.09004 * 110.72211 * 82.69872 * 11 10 9 13 13 N 1.46502 * 110.71961 * 205.96883 * 11 10 9 14 14 C 1.36938 * 119.99996 * 268.52474 * 13 11 10 15 15 H 1.08003 * 120.00115 * 359.97438 * 14 13 11 16 16 C 1.38814 * 119.99790 * 179.97438 * 14 13 11 17 17 N 1.31614 * 120.00284 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99809 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47110 * 59.99620 * 18 16 14 20 20 H 1.48492 * 109.46959 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.46735 * 299.99927 * 18 16 14 22 22 C 1.47018 * 125.64878 * 185.62065 * 8 6 5 23 23 H 1.09004 * 109.88290 * 300.59018 * 22 8 6 24 24 C 1.52997 * 109.88442 * 61.59788 * 22 8 6 25 25 S 1.75837 * 109.08247 * 359.97438 * 5 4 3 26 26 C 1.33814 * 122.44901 * 84.97741 * 3 2 1 27 27 C 1.50695 * 124.52518 * 0.03641 * 26 3 2 28 28 H 1.09007 * 109.46840 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47093 * 299.99544 * 1 2 3 30 30 H 1.08988 * 109.47426 * 60.00237 * 1 2 3 31 31 H 1.09003 * 109.46816 * 239.99988 * 2 1 3 32 32 H 1.09004 * 109.47432 * 120.00059 * 2 1 3 33 33 H 1.08003 * 123.35237 * 359.97438 * 4 3 2 34 34 H 1.08998 * 110.36624 * 274.74912 * 9 8 6 35 35 H 1.08991 * 110.36953 * 37.07224 * 9 8 6 36 36 H 1.08998 * 111.19098 * 279.18915 * 10 9 8 37 37 H 1.09006 * 110.93828 * 155.28733 * 10 9 8 38 38 H 0.97004 * 120.00129 * 88.52163 * 13 11 10 39 39 H 0.96997 * 120.00510 * 179.97438 * 17 16 14 40 40 H 1.09004 * 109.47173 * 58.55165 * 24 22 8 41 41 H 1.09001 * 109.47521 * 178.54586 * 24 22 8 42 42 H 1.08999 * 109.47524 * 298.54819 * 24 22 8 43 43 H 1.08997 * 109.47072 * 179.97438 * 27 26 3 44 44 H 1.09001 * 109.47088 * 299.98401 * 27 26 3 45 45 H 1.09005 * 109.47181 * 59.98377 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3739 2.0824 -1.1557 5 6 2.8061 3.3605 -0.9392 6 6 3.2350 4.3007 -1.9788 7 8 3.1170 4.0046 -3.1533 8 7 3.7602 5.4931 -1.6339 9 6 4.0615 5.9341 -0.2598 10 6 5.1635 7.0135 -0.4249 11 6 4.7049 7.7268 -1.7242 12 1 3.9384 8.4705 -1.5059 13 7 5.8453 8.3413 -2.4083 14 6 6.1867 9.6398 -2.1392 15 1 5.6149 10.2112 -1.4230 16 6 7.2676 10.2218 -2.7871 17 7 7.9648 9.5255 -3.6596 18 14 7.7337 11.9931 -2.4195 19 1 8.0636 12.1292 -0.9781 20 1 8.9140 12.3740 -3.2361 21 1 6.5934 12.8842 -2.7526 22 6 4.1213 6.5719 -2.5651 23 1 4.8665 6.2143 -3.2756 24 6 2.8763 7.0511 -3.3143 25 16 2.7641 3.6970 0.7862 26 6 2.1784 2.1307 1.1249 27 6 1.8682 1.6152 2.5065 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 2.3080 1.6361 -2.1370 34 1 3.1735 6.3631 0.2043 35 1 4.4347 5.0993 0.3333 36 1 6.1451 6.5578 -0.5550 37 1 5.1636 7.7024 0.4198 38 1 6.3587 7.8282 -3.0519 39 1 8.7199 9.9322 -4.1126 40 1 2.1328 7.3999 -2.5976 41 1 3.1469 7.8678 -3.9835 42 1 2.4623 6.2271 -3.8954 43 1 2.0755 2.3943 3.2400 44 1 0.8164 1.3345 2.5619 45 1 2.4884 0.7438 2.7170 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987486563.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:03 Heat of formation + Delta-G solvation = -19.299840 kcal Electronic energy + Delta-G solvation = -24926.860185 eV Core-core repulsion = 21455.974470 eV Total energy + Delta-G solvation = -3470.885715 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.36374 -39.82654 -38.63787 -35.96342 -34.04267 -33.31218 -32.53031 -32.18915 -30.91221 -28.01082 -26.93161 -25.14456 -24.83698 -24.56645 -23.07072 -21.63477 -20.55093 -19.27479 -19.21908 -18.85670 -17.53271 -17.10888 -16.62037 -16.51936 -15.66000 -15.56931 -15.30780 -15.10684 -14.92043 -14.75926 -14.49008 -14.20294 -14.01751 -13.70517 -13.53212 -13.47030 -13.27975 -13.21087 -12.96047 -12.84961 -12.69852 -12.64590 -12.57204 -12.31995 -12.22627 -12.14389 -11.80903 -11.75150 -11.65334 -11.34707 -11.14937 -10.89135 -9.95728 -9.47890 -9.31784 -9.03791 -7.93273 -5.23919 -0.49933 0.49331 0.94745 1.32374 1.50243 1.53184 1.58978 1.79032 2.10115 2.58070 3.32782 3.44111 3.63764 3.78078 3.86126 3.95802 4.07921 4.13562 4.18496 4.25337 4.33668 4.40932 4.44278 4.53283 4.56292 4.61411 4.64967 4.70975 4.78565 4.83291 4.95480 4.98451 4.99704 5.12119 5.15114 5.16879 5.17866 5.28558 5.33273 5.40072 5.47021 5.54758 5.57401 6.26055 6.39390 6.96487 7.32863 8.03688 8.28159 9.30031 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.029159 B = 0.002734 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.032315 B =10238.040451 C =10798.282350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.061 4.061 3 C -0.135 4.135 4 C -0.050 4.050 5 C -0.301 4.301 6 C 0.596 3.404 7 O -0.579 6.579 8 N -0.607 5.607 9 C 0.092 3.908 10 C -0.142 4.142 11 C 0.174 3.826 12 H 0.079 0.921 13 N -0.728 5.728 14 C -0.238 4.238 15 H 0.086 0.914 16 C -0.076 4.076 17 N -0.972 5.972 18 Si 0.975 3.025 19 H -0.274 1.274 20 H -0.302 1.302 21 H -0.277 1.277 22 C 0.132 3.868 23 H 0.046 0.954 24 C -0.144 4.144 25 S 0.252 5.748 26 C -0.203 4.203 27 C -0.084 4.084 28 H 0.072 0.928 29 H 0.060 0.940 30 H 0.042 0.958 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.139 0.861 34 H 0.100 0.900 35 H 0.092 0.908 36 H 0.058 0.942 37 H 0.099 0.901 38 H 0.371 0.629 39 H 0.250 0.750 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.048 0.952 43 H 0.079 0.921 44 H 0.091 0.909 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.041 -17.814 16.513 29.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.101 4.101 3 C -0.147 4.147 4 C -0.084 4.084 5 C -0.421 4.421 6 C 0.387 3.613 7 O -0.461 6.461 8 N -0.339 5.339 9 C -0.031 4.031 10 C -0.183 4.183 11 C 0.064 3.936 12 H 0.097 0.903 13 N -0.366 5.366 14 C -0.369 4.369 15 H 0.104 0.896 16 C -0.268 4.268 17 N -0.622 5.622 18 Si 0.803 3.197 19 H -0.200 1.200 20 H -0.228 1.228 21 H -0.203 1.203 22 C 0.028 3.972 23 H 0.064 0.936 24 C -0.202 4.202 25 S 0.523 5.477 26 C -0.322 4.322 27 C -0.142 4.142 28 H 0.091 0.909 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.088 0.912 32 H 0.107 0.893 33 H 0.156 0.844 34 H 0.118 0.882 35 H 0.110 0.890 36 H 0.077 0.923 37 H 0.117 0.883 38 H 0.203 0.797 39 H 0.059 0.941 40 H 0.090 0.910 41 H 0.082 0.918 42 H 0.067 0.933 43 H 0.098 0.902 44 H 0.110 0.890 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -15.767 -16.553 16.869 28.410 hybrid contribution 0.625 -0.457 -1.884 2.037 sum -15.141 -17.010 14.985 27.260 Atomic orbital electron populations 1.21715 0.94249 1.02418 1.01785 1.20280 0.96388 0.89842 1.03550 1.18754 1.05574 0.99684 0.90651 1.20713 0.95624 0.91735 1.00336 1.24281 1.18969 1.00280 0.98573 1.17037 0.76847 0.79947 0.87452 1.90770 1.58423 1.76782 1.20144 1.48414 1.61734 1.14050 1.09711 1.22724 0.99736 0.98362 0.82262 1.23428 0.97226 0.97185 1.00419 1.21419 0.89783 0.91788 0.90630 0.90289 1.42514 1.32866 1.11813 1.49439 1.19606 1.09471 0.89184 1.18640 0.89635 1.25600 0.99109 1.02369 0.99731 1.69829 1.22364 1.38040 1.31997 0.85197 0.76957 0.80018 0.77480 1.19995 1.22819 1.20321 1.21736 0.96757 0.87098 0.91643 0.93553 1.21936 0.96946 1.00854 1.00481 1.83081 1.58631 1.10299 0.95712 1.24858 1.05213 1.00648 1.01494 1.20521 1.03586 1.02155 0.87978 0.90932 0.92133 0.93913 0.91189 0.89309 0.84372 0.88201 0.89046 0.92332 0.88287 0.79711 0.94118 0.90997 0.91780 0.93274 0.90230 0.89021 0.89017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.89 71.98 0.71 -0.95 16 2 C -0.06 -0.81 5.83 29.85 0.17 -0.63 16 3 C -0.14 -2.51 5.04 -21.05 -0.11 -2.62 16 4 C -0.05 -1.23 9.79 21.72 0.21 -1.02 16 5 C -0.30 -8.24 6.34 24.08 0.15 -8.09 16 6 C 0.60 20.78 7.55 86.42 0.65 21.43 16 7 O -0.58 -24.50 16.10 -4.35 -0.07 -24.57 16 8 N -0.61 -19.78 3.06 -792.40 -2.43 -22.20 16 9 C 0.09 2.35 5.29 86.93 0.46 2.81 16 10 C -0.14 -4.40 6.78 32.06 0.22 -4.19 16 11 C 0.17 6.55 3.14 46.18 0.14 6.69 16 12 H 0.08 2.84 7.80 -2.38 -0.02 2.82 16 13 N -0.73 -35.67 5.22 -317.32 -1.66 -37.32 16 14 C -0.24 -12.57 9.96 84.03 0.84 -11.74 16 15 H 0.09 4.21 7.83 -2.91 -0.02 4.19 16 16 C -0.08 -4.26 5.50 84.86 0.47 -3.79 16 17 N -0.97 -59.32 13.06 21.65 0.28 -59.04 16 18 Si 0.97 45.03 29.55 68.60 2.03 47.05 16 19 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 20 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 21 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 22 C 0.13 4.90 3.18 45.34 0.14 5.05 16 23 H 0.05 2.03 7.72 -2.39 -0.02 2.01 16 24 C -0.14 -5.00 9.11 71.98 0.66 -4.34 16 25 S 0.25 4.69 18.60 -56.49 -1.05 3.64 16 26 C -0.20 -3.24 6.28 24.68 0.15 -3.08 16 27 C -0.08 -0.74 9.44 71.23 0.67 -0.06 16 28 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 29 H 0.06 0.62 7.41 -2.39 -0.02 0.61 16 30 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.07 0.95 8.10 -2.39 -0.02 0.93 16 32 H 0.09 0.86 7.45 -2.38 -0.02 0.84 16 33 H 0.14 3.60 8.06 -2.91 -0.02 3.58 16 34 H 0.10 2.03 7.95 -2.39 -0.02 2.01 16 35 H 0.09 2.03 5.74 -10.76 -0.06 1.96 16 36 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.10 2.71 8.14 -2.38 -0.02 2.69 16 38 H 0.37 20.28 7.57 -92.71 -0.70 19.58 16 39 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 40 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 41 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 42 H 0.05 1.80 7.07 -2.39 -0.02 1.78 16 43 H 0.08 0.54 8.11 -2.39 -0.02 0.52 16 44 H 0.09 0.61 7.41 -2.39 -0.02 0.59 16 45 H 0.09 0.61 7.92 -2.38 -0.02 0.59 16 Total: -1.00 -69.90 373.33 2.90 -67.00 By element: Atomic # 1 Polarization: 29.74 SS G_CDS: 0.24 Total: 29.99 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: 5.55 Total: -4.54 kcal Atomic # 7 Polarization: -114.76 SS G_CDS: -3.80 Total: -118.57 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: -0.07 Total: -24.57 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Atomic # 16 Polarization: 4.69 SS G_CDS: -1.05 Total: 3.64 kcal Total: -69.90 2.90 -67.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987486563.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.701 kcal (2) G-P(sol) polarization free energy of solvation -69.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds