Wall clock time and date at job start Tue Mar 31 2020 13:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50704 * 109.46876 * 2 1 4 4 C 1.37480 * 122.44503 * 265.28839 * 3 2 1 5 5 C 1.36644 * 113.29601 * 180.17668 * 4 3 2 6 6 C 1.46577 * 125.45727 * 179.83455 * 5 4 3 7 7 O 1.21698 * 120.00053 * 353.78497 * 6 5 4 8 8 N 1.34782 * 119.99848 * 173.77306 * 6 5 4 9 9 C 1.47421 * 125.64734 * 354.34880 * 8 6 5 10 10 C 1.54915 * 104.82942 * 204.16012 * 9 8 6 11 11 C 1.55161 * 101.58162 * 322.98630 * 10 9 8 12 12 H 1.09002 * 110.72069 * 277.14486 * 11 10 9 13 13 N 1.46502 * 110.71921 * 153.86409 * 11 10 9 14 14 C 1.36939 * 119.99584 * 91.48552 * 13 11 10 15 15 H 1.08000 * 120.00419 * 359.97438 * 14 13 11 16 16 C 1.38814 * 119.99798 * 180.02562 * 14 13 11 17 17 N 1.31620 * 119.99763 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99786 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47444 * 359.97438 * 18 16 14 20 20 H 1.48506 * 109.46829 * 119.99897 * 18 16 14 21 21 H 1.48497 * 109.46746 * 239.99433 * 18 16 14 22 22 C 1.47023 * 125.64656 * 174.37897 * 8 6 5 23 23 H 1.09007 * 109.87997 * 59.34193 * 22 8 6 24 24 C 1.52995 * 109.88649 * 298.32829 * 22 8 6 25 25 S 1.75833 * 109.08122 * 359.58051 * 5 4 3 26 26 C 1.33817 * 122.45366 * 84.99450 * 3 2 1 27 27 C 1.50695 * 124.52201 * 0.04492 * 26 3 2 28 28 H 1.09000 * 109.46950 * 60.00841 * 1 2 3 29 29 H 1.09007 * 109.46800 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47642 * 300.00348 * 1 2 3 31 31 H 1.08992 * 109.47358 * 239.99707 * 2 1 3 32 32 H 1.09000 * 109.46950 * 119.99159 * 2 1 3 33 33 H 1.08003 * 123.34978 * 0.02562 * 4 3 2 34 34 H 1.08996 * 110.36979 * 322.98977 * 9 8 6 35 35 H 1.08994 * 110.37103 * 85.32141 * 9 8 6 36 36 H 1.08993 * 111.01008 * 81.05882 * 10 9 8 37 37 H 1.08998 * 111.00262 * 204.88010 * 10 9 8 38 38 H 0.96994 * 120.00041 * 271.47632 * 13 11 10 39 39 H 0.97003 * 119.99577 * 180.02562 * 17 16 14 40 40 H 1.09002 * 109.46821 * 61.45473 * 24 22 8 41 41 H 1.08998 * 109.47461 * 181.45086 * 24 22 8 42 42 H 1.09006 * 109.47267 * 301.45593 * 24 22 8 43 43 H 1.08998 * 109.47031 * 179.97438 * 27 26 3 44 44 H 1.09000 * 109.47063 * 299.99898 * 27 26 3 45 45 H 1.09000 * 109.47464 * 60.00004 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3680 2.0845 -1.1563 5 6 2.8044 3.3611 -0.9394 6 6 3.2324 4.3015 -1.9791 7 8 3.3242 3.9307 -3.1346 8 7 3.5240 5.5770 -1.6554 9 6 3.3445 6.1886 -0.3261 10 6 3.2110 7.7069 -0.6030 11 6 4.2161 7.9005 -1.7691 12 1 5.2315 8.0114 -1.3887 13 7 3.8401 9.0532 -2.5915 14 6 4.3495 10.2921 -2.3073 15 1 5.0280 10.4196 -1.4768 16 6 3.9929 11.3845 -3.0861 17 7 3.1656 11.2292 -4.0980 18 14 4.6872 13.0747 -2.6981 19 1 5.5864 12.9819 -1.5200 20 1 5.4530 13.5757 -3.8677 21 1 3.5737 14.0101 -2.3980 22 6 4.0733 6.5888 -2.5697 23 1 3.3947 6.7366 -3.4099 24 6 5.4436 6.1394 -3.0807 25 16 2.7634 3.6973 0.7860 26 6 2.1787 2.1307 1.1249 27 6 1.8691 1.6150 2.5066 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 2.2963 1.6402 -2.1381 34 1 2.4393 5.8084 0.1473 35 1 4.2133 5.9925 0.3022 36 1 2.1976 7.9596 -0.9148 37 1 3.5063 8.2905 0.2689 38 1 3.2306 8.9387 -3.3372 39 1 2.9168 11.9925 -4.6425 40 1 5.3369 5.2062 -3.6338 41 1 5.8558 6.9057 -3.7373 42 1 6.1144 5.9861 -2.2352 43 1 2.0766 2.3941 3.2401 44 1 0.8175 1.3339 2.5622 45 1 2.4897 0.7440 2.7169 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987486564.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:08 Heat of formation + Delta-G solvation = -1.664573 kcal Electronic energy + Delta-G solvation = -24933.701613 eV Core-core repulsion = 21463.580620 eV Total energy + Delta-G solvation = -3470.120993 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.04951 -38.91322 -37.27501 -34.17989 -33.11597 -31.94206 -31.49582 -30.94593 -29.27828 -27.11814 -25.29885 -24.15465 -23.85612 -23.05200 -21.89738 -20.24560 -19.37989 -18.32481 -17.80723 -17.26418 -16.13332 -16.12380 -15.36162 -14.90622 -14.73352 -14.35111 -14.08369 -13.83921 -13.61511 -13.56814 -13.40158 -13.02994 -12.97201 -12.74842 -12.61906 -12.25698 -12.16465 -12.05214 -11.81715 -11.73680 -11.58447 -11.22802 -11.21341 -11.06100 -10.90825 -10.63682 -10.57364 -10.24669 -10.04931 -9.85151 -9.70744 -8.99058 -8.81180 -8.49903 -8.36740 -7.06423 -5.83956 -3.14707 0.44756 1.39146 1.81163 2.24923 3.07036 3.29514 3.39449 3.45168 3.47530 4.50675 4.52745 4.54536 4.77647 4.82896 4.93508 5.00047 5.07627 5.19879 5.21522 5.28954 5.38165 5.40240 5.43286 5.51486 5.54034 5.61120 5.64268 5.67138 5.75233 5.81913 5.93162 5.95137 6.05329 6.09516 6.19606 6.24781 6.32393 6.42230 6.53731 6.58625 6.70710 6.87524 7.63771 7.67528 8.26683 8.33230 9.44808 9.98652 10.33519 11.38158 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.027082 B = 0.002747 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.643396 B =10189.321148 C =10646.744835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.062 4.062 3 C -0.122 4.122 4 C -0.051 4.051 5 C -0.258 4.258 6 C 0.601 3.399 7 O -0.533 6.533 8 N -0.605 5.605 9 C 0.086 3.914 10 C -0.151 4.151 11 C 0.178 3.822 12 H 0.070 0.930 13 N -0.713 5.713 14 C -0.244 4.244 15 H 0.073 0.927 16 C -0.010 4.010 17 N -0.929 5.929 18 Si 0.908 3.092 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.291 1.291 22 C 0.127 3.873 23 H 0.080 0.920 24 C -0.154 4.154 25 S 0.218 5.782 26 C -0.219 4.219 27 C -0.081 4.081 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.149 0.851 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.386 0.614 39 H 0.256 0.744 40 H 0.059 0.941 41 H 0.072 0.928 42 H 0.051 0.949 43 H 0.066 0.934 44 H 0.076 0.924 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.620 -21.351 13.858 25.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.102 4.102 3 C -0.134 4.134 4 C -0.085 4.085 5 C -0.378 4.378 6 C 0.389 3.611 7 O -0.412 6.412 8 N -0.338 5.338 9 C -0.038 4.038 10 C -0.192 4.192 11 C 0.066 3.934 12 H 0.087 0.913 13 N -0.353 5.353 14 C -0.375 4.375 15 H 0.091 0.909 16 C -0.206 4.206 17 N -0.576 5.576 18 Si 0.739 3.261 19 H -0.205 1.205 20 H -0.218 1.218 21 H -0.218 1.218 22 C 0.024 3.976 23 H 0.098 0.902 24 C -0.212 4.212 25 S 0.488 5.512 26 C -0.338 4.338 27 C -0.139 4.139 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.167 0.833 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.221 0.779 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.091 0.909 42 H 0.070 0.930 43 H 0.085 0.915 44 H 0.094 0.906 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.115 -20.156 14.172 24.731 hybrid contribution -0.330 -0.338 -0.862 0.983 sum -2.446 -20.494 13.311 24.560 Atomic orbital electron populations 1.21733 0.94882 1.01535 1.02282 1.20216 0.95923 0.91376 1.02669 1.18587 1.05091 0.98345 0.91397 1.20552 0.96317 0.91913 0.99690 1.24516 1.16114 1.00144 0.97049 1.16558 0.77475 0.80145 0.86919 1.90810 1.54073 1.77142 1.19214 1.48403 1.63077 1.09596 1.12764 1.22549 1.00783 0.95856 0.84632 1.23576 1.02910 0.91102 1.01643 1.21240 0.96484 0.85768 0.89950 0.91256 1.42359 1.55207 1.02922 1.34831 1.19254 1.22251 0.84841 1.11175 0.90885 1.24779 0.99849 0.98171 0.97850 1.69679 1.37709 1.30135 1.20101 0.86108 0.78133 0.84408 0.77438 1.20475 1.21796 1.21826 1.22001 0.95142 0.87586 0.92896 0.90173 1.22042 0.95833 1.02119 1.01219 1.83425 1.60332 1.08432 0.99018 1.24395 1.08162 1.01122 1.00112 1.20328 1.02356 1.01200 0.90024 0.92434 0.92454 0.92686 0.91013 0.91153 0.83294 0.90885 0.91104 0.90432 0.90216 0.77912 0.93386 0.92165 0.90861 0.93022 0.91480 0.90569 0.90579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.89 37.16 0.37 -0.68 16 2 C -0.06 -0.49 5.83 -27.88 -0.16 -0.65 16 3 C -0.12 -1.25 5.04 -106.45 -0.54 -1.79 16 4 C -0.05 -0.65 9.79 -40.43 -0.40 -1.04 16 5 C -0.26 -3.59 6.34 -36.80 -0.23 -3.83 16 6 C 0.60 10.23 7.55 -12.90 -0.10 10.14 16 7 O -0.53 -10.69 16.11 5.19 0.08 -10.61 16 8 N -0.61 -9.87 3.06 -164.58 -0.50 -10.37 16 9 C 0.09 1.18 5.28 -2.53 -0.01 1.17 16 10 C -0.15 -2.44 6.77 -24.58 -0.17 -2.61 16 11 C 0.18 3.37 3.14 -66.09 -0.21 3.16 16 12 H 0.07 1.30 7.80 -51.93 -0.41 0.90 16 13 N -0.71 -17.14 5.22 -51.64 -0.27 -17.41 16 14 C -0.24 -6.47 9.96 -15.06 -0.15 -6.62 16 15 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 16 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 17 N -0.93 -27.47 13.06 55.49 0.72 -26.75 16 18 Si 0.91 21.77 29.55 -169.99 -5.02 16.75 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 22 C 0.13 2.30 3.18 -66.95 -0.21 2.08 16 23 H 0.08 1.63 7.72 -51.92 -0.40 1.23 16 24 C -0.15 -2.61 9.11 37.16 0.34 -2.28 16 25 S 0.22 2.32 18.60 -107.50 -2.00 0.32 16 26 C -0.22 -2.11 6.28 -35.86 -0.23 -2.33 16 27 C -0.08 -0.54 9.44 36.00 0.34 -0.20 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.38 7.41 -51.93 -0.38 0.00 16 31 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 32 H 0.07 0.46 7.45 -51.93 -0.39 0.08 16 33 H 0.15 1.85 8.06 -52.48 -0.42 1.42 16 34 H 0.07 0.90 5.75 -38.92 -0.22 0.68 16 35 H 0.07 0.85 7.95 -51.93 -0.41 0.44 16 36 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 37 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.39 10.07 7.57 -40.82 -0.31 9.76 16 39 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 40 H 0.06 1.06 7.08 -51.93 -0.37 0.69 16 41 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 42 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.07 0.39 8.11 -51.93 -0.42 -0.03 16 44 H 0.08 0.44 7.41 -51.93 -0.38 0.06 16 45 H 0.08 0.43 7.92 -51.93 -0.41 0.02 16 LS Contribution 373.33 15.07 5.63 5.63 Total: -1.00 -31.06 373.33 -9.85 -40.91 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -7.03 Total: 7.36 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: -1.45 Total: -5.84 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: -0.05 Total: -54.52 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.08 Total: -10.61 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: 2.32 SS G_CDS: -2.00 Total: 0.32 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.06 -9.85 -40.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987486564.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.241 kcal (2) G-P(sol) polarization free energy of solvation -31.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds