Wall clock time and date at job start Tue Mar 31 2020 13:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50704 * 109.46876 * 2 1 4 4 C 1.37480 * 122.44503 * 265.28839 * 3 2 1 5 5 C 1.36644 * 113.29601 * 180.17668 * 4 3 2 6 6 C 1.46577 * 125.45727 * 179.83455 * 5 4 3 7 7 O 1.21698 * 120.00053 * 353.78497 * 6 5 4 8 8 N 1.34782 * 119.99848 * 173.77306 * 6 5 4 9 9 C 1.47421 * 125.64734 * 354.34880 * 8 6 5 10 10 C 1.54915 * 104.82942 * 204.16012 * 9 8 6 11 11 C 1.55161 * 101.58162 * 322.98630 * 10 9 8 12 12 H 1.09002 * 110.72069 * 277.14486 * 11 10 9 13 13 N 1.46502 * 110.71921 * 153.86409 * 11 10 9 14 14 C 1.36939 * 119.99584 * 91.48552 * 13 11 10 15 15 H 1.08000 * 120.00419 * 359.97438 * 14 13 11 16 16 C 1.38814 * 119.99798 * 180.02562 * 14 13 11 17 17 N 1.31620 * 119.99763 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99786 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47444 * 359.97438 * 18 16 14 20 20 H 1.48506 * 109.46829 * 119.99897 * 18 16 14 21 21 H 1.48497 * 109.46746 * 239.99433 * 18 16 14 22 22 C 1.47023 * 125.64656 * 174.37897 * 8 6 5 23 23 H 1.09007 * 109.87997 * 59.34193 * 22 8 6 24 24 C 1.52995 * 109.88649 * 298.32829 * 22 8 6 25 25 S 1.75833 * 109.08122 * 359.58051 * 5 4 3 26 26 C 1.33817 * 122.45366 * 84.99450 * 3 2 1 27 27 C 1.50695 * 124.52201 * 0.04492 * 26 3 2 28 28 H 1.09000 * 109.46950 * 60.00841 * 1 2 3 29 29 H 1.09007 * 109.46800 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47642 * 300.00348 * 1 2 3 31 31 H 1.08992 * 109.47358 * 239.99707 * 2 1 3 32 32 H 1.09000 * 109.46950 * 119.99159 * 2 1 3 33 33 H 1.08003 * 123.34978 * 0.02562 * 4 3 2 34 34 H 1.08996 * 110.36979 * 322.98977 * 9 8 6 35 35 H 1.08994 * 110.37103 * 85.32141 * 9 8 6 36 36 H 1.08993 * 111.01008 * 81.05882 * 10 9 8 37 37 H 1.08998 * 111.00262 * 204.88010 * 10 9 8 38 38 H 0.96994 * 120.00041 * 271.47632 * 13 11 10 39 39 H 0.97003 * 119.99577 * 180.02562 * 17 16 14 40 40 H 1.09002 * 109.46821 * 61.45473 * 24 22 8 41 41 H 1.08998 * 109.47461 * 181.45086 * 24 22 8 42 42 H 1.09006 * 109.47267 * 301.45593 * 24 22 8 43 43 H 1.08998 * 109.47031 * 179.97438 * 27 26 3 44 44 H 1.09000 * 109.47063 * 299.99898 * 27 26 3 45 45 H 1.09000 * 109.47464 * 60.00004 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3680 2.0845 -1.1563 5 6 2.8044 3.3611 -0.9394 6 6 3.2324 4.3015 -1.9791 7 8 3.3242 3.9307 -3.1346 8 7 3.5240 5.5770 -1.6554 9 6 3.3445 6.1886 -0.3261 10 6 3.2110 7.7069 -0.6030 11 6 4.2161 7.9005 -1.7691 12 1 5.2315 8.0114 -1.3887 13 7 3.8401 9.0532 -2.5915 14 6 4.3495 10.2921 -2.3073 15 1 5.0280 10.4196 -1.4768 16 6 3.9929 11.3845 -3.0861 17 7 3.1656 11.2292 -4.0980 18 14 4.6872 13.0747 -2.6981 19 1 5.5864 12.9819 -1.5200 20 1 5.4530 13.5757 -3.8677 21 1 3.5737 14.0101 -2.3980 22 6 4.0733 6.5888 -2.5697 23 1 3.3947 6.7366 -3.4099 24 6 5.4436 6.1394 -3.0807 25 16 2.7634 3.6973 0.7860 26 6 2.1787 2.1307 1.1249 27 6 1.8691 1.6150 2.5066 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 2.2963 1.6402 -2.1381 34 1 2.4393 5.8084 0.1473 35 1 4.2133 5.9925 0.3022 36 1 2.1976 7.9596 -0.9148 37 1 3.5063 8.2905 0.2689 38 1 3.2306 8.9387 -3.3372 39 1 2.9168 11.9925 -4.6425 40 1 5.3369 5.2062 -3.6338 41 1 5.8558 6.9057 -3.7373 42 1 6.1144 5.9861 -2.2352 43 1 2.0766 2.3941 3.2401 44 1 0.8175 1.3339 2.5622 45 1 2.4897 0.7440 2.7169 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987486564.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:07 Heat of formation + Delta-G solvation = -19.594365 kcal Electronic energy + Delta-G solvation = -24934.479107 eV Core-core repulsion = 21463.580620 eV Total energy + Delta-G solvation = -3470.898487 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.36571 -39.82768 -38.64114 -35.96771 -34.04238 -33.31281 -32.53555 -32.19477 -30.91773 -28.01117 -26.93607 -25.14650 -24.83571 -24.56987 -23.06942 -21.63713 -20.55694 -19.27750 -19.21820 -18.85491 -17.53703 -17.10479 -16.61803 -16.48408 -15.83819 -15.50009 -15.30168 -15.02652 -14.88720 -14.73884 -14.53986 -14.26929 -14.00744 -13.69290 -13.55118 -13.48502 -13.24753 -13.21024 -12.98498 -12.86190 -12.73191 -12.66434 -12.53733 -12.33995 -12.20195 -12.07281 -11.80808 -11.74971 -11.65659 -11.34853 -11.15076 -10.91843 -9.95680 -9.47867 -9.31694 -9.04018 -7.93828 -5.24339 -0.49925 0.49434 0.94818 1.32358 1.50230 1.50863 1.60807 1.78907 2.10111 2.57661 3.32742 3.44202 3.63998 3.77972 3.86128 3.95584 4.07901 4.13593 4.18506 4.25358 4.33614 4.40856 4.44547 4.53004 4.56439 4.61586 4.64827 4.71011 4.78598 4.83315 4.95361 4.98255 4.99759 5.12040 5.15029 5.16863 5.17839 5.28642 5.33090 5.39923 5.46925 5.55209 5.57402 6.25926 6.39346 6.96463 7.32657 8.03307 8.27713 9.29907 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.027082 B = 0.002747 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.643396 B =10189.321148 C =10646.744835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.061 4.061 3 C -0.135 4.135 4 C -0.050 4.050 5 C -0.301 4.301 6 C 0.597 3.403 7 O -0.579 6.579 8 N -0.607 5.607 9 C 0.092 3.908 10 C -0.142 4.142 11 C 0.174 3.826 12 H 0.080 0.920 13 N -0.728 5.728 14 C -0.234 4.234 15 H 0.086 0.914 16 C -0.077 4.077 17 N -0.972 5.972 18 Si 0.974 3.026 19 H -0.260 1.260 20 H -0.298 1.298 21 H -0.296 1.296 22 C 0.132 3.868 23 H 0.046 0.954 24 C -0.144 4.144 25 S 0.252 5.748 26 C -0.203 4.203 27 C -0.084 4.084 28 H 0.041 0.959 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.139 0.861 34 H 0.092 0.908 35 H 0.100 0.900 36 H 0.057 0.943 37 H 0.099 0.901 38 H 0.371 0.629 39 H 0.250 0.750 40 H 0.048 0.952 41 H 0.063 0.937 42 H 0.071 0.929 43 H 0.079 0.921 44 H 0.090 0.910 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.181 -22.793 17.846 29.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.100 4.100 3 C -0.147 4.147 4 C -0.084 4.084 5 C -0.421 4.421 6 C 0.387 3.613 7 O -0.461 6.461 8 N -0.339 5.339 9 C -0.031 4.031 10 C -0.183 4.183 11 C 0.064 3.936 12 H 0.097 0.903 13 N -0.367 5.367 14 C -0.366 4.366 15 H 0.104 0.896 16 C -0.269 4.269 17 N -0.623 5.623 18 Si 0.803 3.197 19 H -0.184 1.184 20 H -0.226 1.226 21 H -0.224 1.224 22 C 0.027 3.973 23 H 0.064 0.936 24 C -0.202 4.202 25 S 0.523 5.477 26 C -0.322 4.322 27 C -0.142 4.142 28 H 0.060 0.940 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.108 0.892 33 H 0.156 0.844 34 H 0.109 0.891 35 H 0.118 0.882 36 H 0.076 0.924 37 H 0.118 0.882 38 H 0.203 0.797 39 H 0.059 0.941 40 H 0.067 0.933 41 H 0.082 0.918 42 H 0.090 0.910 43 H 0.098 0.902 44 H 0.108 0.892 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.654 -21.625 18.238 28.338 hybrid contribution -0.498 -0.053 -2.014 2.075 sum -2.152 -21.679 16.224 27.163 Atomic orbital electron populations 1.21725 0.94399 1.02413 1.01725 1.20276 0.96254 0.89851 1.03612 1.18757 1.05604 0.99669 0.90644 1.20714 0.95580 0.91758 1.00356 1.24279 1.19094 1.00175 0.98564 1.17036 0.76639 0.80446 0.87154 1.90769 1.56070 1.77963 1.21311 1.48415 1.62884 1.09265 1.13348 1.22677 1.03041 0.93645 0.83712 1.23391 1.00743 0.93379 1.00776 1.21421 0.97600 0.84325 0.90265 0.90255 1.42532 1.55043 1.03861 1.35220 1.19679 1.20902 0.85581 1.10436 0.89576 1.25598 1.01052 1.01915 0.98321 1.69849 1.40008 1.30664 1.21730 0.85065 0.77318 0.79887 0.77424 1.18384 1.22579 1.22372 1.21740 0.95050 0.88153 0.92307 0.93579 1.21934 0.95550 1.01098 1.01614 1.83079 1.59782 1.09118 0.95723 1.24859 1.05667 1.00192 1.01495 1.20521 1.03555 1.02191 0.87977 0.94025 0.90900 0.92194 0.91109 0.89216 0.84374 0.89075 0.88196 0.92373 0.88233 0.79710 0.94141 0.93282 0.91772 0.90976 0.90231 0.89166 0.88866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.89 71.98 0.71 -1.02 16 2 C -0.06 -0.80 5.83 29.85 0.17 -0.62 16 3 C -0.14 -2.51 5.04 -21.05 -0.11 -2.61 16 4 C -0.05 -1.23 9.79 21.72 0.21 -1.02 16 5 C -0.30 -8.24 6.34 24.07 0.15 -8.08 16 6 C 0.60 20.76 7.55 86.42 0.65 21.41 16 7 O -0.58 -24.49 16.11 -4.34 -0.07 -24.56 16 8 N -0.61 -19.75 3.06 -792.82 -2.43 -22.18 16 9 C 0.09 2.35 5.28 86.86 0.46 2.80 16 10 C -0.14 -4.40 6.77 31.99 0.22 -4.19 16 11 C 0.17 6.54 3.14 46.18 0.14 6.68 16 12 H 0.08 2.85 7.80 -2.39 -0.02 2.83 16 13 N -0.73 -35.62 5.22 -317.31 -1.66 -37.28 16 14 C -0.23 -12.39 9.96 84.03 0.84 -11.55 16 15 H 0.09 4.25 7.83 -2.91 -0.02 4.23 16 16 C -0.08 -4.30 5.50 84.86 0.47 -3.84 16 17 N -0.97 -59.30 13.06 21.65 0.28 -59.02 16 18 Si 0.97 45.05 29.55 68.60 2.03 47.08 16 19 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 20 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 21 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 22 C 0.13 4.89 3.18 45.34 0.14 5.03 16 23 H 0.05 2.02 7.72 -2.38 -0.02 2.00 16 24 C -0.14 -4.98 9.11 71.98 0.66 -4.32 16 25 S 0.25 4.68 18.60 -56.49 -1.05 3.63 16 26 C -0.20 -3.23 6.28 24.68 0.15 -3.08 16 27 C -0.08 -0.73 9.44 71.23 0.67 -0.06 16 28 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 30 H 0.06 0.65 7.41 -2.39 -0.02 0.64 16 31 H 0.07 0.94 8.10 -2.39 -0.02 0.92 16 32 H 0.09 0.84 7.45 -2.39 -0.02 0.83 16 33 H 0.14 3.60 8.06 -2.91 -0.02 3.58 16 34 H 0.09 2.02 5.75 -10.67 -0.06 1.96 16 35 H 0.10 2.02 7.95 -2.39 -0.02 2.00 16 36 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 38 H 0.37 20.25 7.57 -92.71 -0.70 19.55 16 39 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 40 H 0.05 1.79 7.08 -2.39 -0.02 1.78 16 41 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 42 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 43 H 0.08 0.54 8.11 -2.39 -0.02 0.52 16 44 H 0.09 0.62 7.41 -2.39 -0.02 0.60 16 45 H 0.09 0.59 7.92 -2.39 -0.02 0.57 16 Total: -1.00 -70.00 373.33 2.89 -67.11 By element: Atomic # 1 Polarization: 29.43 SS G_CDS: 0.24 Total: 29.68 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: 5.55 Total: -4.46 kcal Atomic # 7 Polarization: -114.67 SS G_CDS: -3.80 Total: -118.48 kcal Atomic # 8 Polarization: -24.49 SS G_CDS: -0.07 Total: -24.56 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Atomic # 16 Polarization: 4.68 SS G_CDS: -1.05 Total: 3.63 kcal Total: -70.00 2.89 -67.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987486564.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.512 kcal (2) G-P(sol) polarization free energy of solvation -69.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds