Wall clock time and date at job start Tue Mar 31 2020 13:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50694 * 109.47207 * 2 1 4 4 S 1.70621 * 124.51902 * 270.26889 * 3 2 1 5 5 C 1.75839 * 91.56417 * 180.02562 * 4 3 2 6 6 C 1.46576 * 125.46383 * 179.97438 * 5 4 3 7 7 O 1.21697 * 120.00370 * 173.47779 * 6 5 4 8 8 N 1.34787 * 119.99610 * 353.47782 * 6 5 4 9 9 C 1.47423 * 125.64738 * 354.39352 * 8 6 5 10 10 C 1.54914 * 104.83204 * 204.16595 * 9 8 6 11 11 C 1.55157 * 101.57901 * 322.99092 * 10 9 8 12 12 H 1.09001 * 110.71721 * 276.96354 * 11 10 9 13 13 N 1.46499 * 110.71898 * 153.86334 * 11 10 9 14 14 C 1.36937 * 119.99666 * 86.45519 * 13 11 10 15 15 H 1.08002 * 120.00283 * 0.02562 * 14 13 11 16 16 C 1.38812 * 120.00047 * 179.97438 * 14 13 11 17 17 N 1.31620 * 119.99624 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00195 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46829 * 270.00165 * 18 16 14 20 20 H 1.48498 * 109.46897 * 30.00262 * 18 16 14 21 21 H 1.48496 * 109.46888 * 150.00050 * 18 16 14 22 22 C 1.47021 * 125.64781 * 174.43616 * 8 6 5 23 23 H 1.08997 * 109.87844 * 59.48671 * 22 8 6 24 24 C 1.53000 * 109.87992 * 298.32255 * 22 8 6 25 25 C 1.36654 * 109.08009 * 359.69638 * 5 4 3 26 26 C 1.33815 * 124.52547 * 89.99814 * 3 2 1 27 27 C 1.50698 * 122.45008 * 359.97438 * 26 3 2 28 28 H 1.08997 * 109.46842 * 59.99979 * 1 2 3 29 29 H 1.09000 * 109.47521 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47311 * 300.00383 * 1 2 3 31 31 H 1.08996 * 109.46891 * 239.99607 * 2 1 3 32 32 H 1.09006 * 109.46986 * 119.99776 * 2 1 3 33 33 H 1.09001 * 110.37173 * 85.32429 * 9 8 6 34 34 H 1.09006 * 110.36539 * 322.99908 * 9 8 6 35 35 H 1.08997 * 111.00283 * 204.91489 * 10 9 8 36 36 H 1.08998 * 111.03343 * 81.07676 * 10 9 8 37 37 H 0.96993 * 120.00623 * 266.45125 * 13 11 10 38 38 H 0.97006 * 119.99869 * 180.02562 * 17 16 14 39 39 H 1.09002 * 109.46779 * 302.18877 * 24 22 8 40 40 H 1.08996 * 109.47551 * 62.19138 * 24 22 8 41 41 H 1.09003 * 109.46837 * 182.19555 * 24 22 8 42 42 H 1.07998 * 123.35035 * 180.24829 * 25 5 4 43 43 H 1.09004 * 109.47114 * 269.99786 * 27 26 3 44 44 H 1.08995 * 109.47197 * 29.99262 * 27 26 3 45 45 H 1.09001 * 109.47608 * 150.00054 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 16 2.3484 2.3345 -1.4058 5 6 2.8452 3.7238 -0.4493 6 6 3.2980 5.0094 -0.9884 7 8 3.5060 5.9447 -0.2381 8 7 3.4841 5.1557 -2.3154 9 6 3.3837 4.0820 -3.3205 10 6 4.2523 4.5677 -4.5078 11 6 3.9620 6.0919 -4.5029 12 1 3.0356 6.3097 -5.0345 13 7 5.0806 6.8344 -5.0889 14 6 5.1400 7.0268 -6.4434 15 1 4.3620 6.6315 -7.0796 16 6 6.1997 7.7308 -6.9987 17 7 7.1476 8.2130 -6.2232 18 14 6.2811 7.9926 -8.8465 19 1 7.0231 6.8693 -9.4733 20 1 4.9041 8.0464 -9.3999 21 1 6.9807 9.2703 -9.1350 22 6 3.8216 6.4123 -2.9999 23 1 4.7635 6.8028 -2.6145 24 6 2.7048 7.4364 -2.7881 25 6 2.7356 3.4150 0.8774 26 6 2.2851 2.1358 1.1025 27 6 2.0881 1.5803 2.4894 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.3483 3.9530 -3.6358 34 1 3.7781 3.1484 -2.9191 35 1 3.9270 4.1110 -5.4424 36 1 5.3088 4.3707 -4.3259 37 1 5.7792 7.1899 -4.5176 38 1 7.8880 8.7054 -6.6112 39 1 1.7638 7.0295 -3.1585 40 1 2.6115 7.6577 -1.7249 41 1 2.9434 8.3515 -3.3302 42 1 2.9790 4.1069 1.6701 43 1 1.0718 1.7893 2.8235 44 1 2.2516 0.5028 2.4758 45 1 2.7981 2.0470 3.1721 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987493732.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:18 Heat of formation + Delta-G solvation = -0.831884 kcal Electronic energy + Delta-G solvation = -24942.186716 eV Core-core repulsion = 21472.101831 eV Total energy + Delta-G solvation = -3470.084885 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.04732 -38.83704 -37.27458 -34.19998 -33.98666 -31.81807 -31.01274 -30.45513 -29.11800 -27.57920 -25.29037 -25.00486 -23.13594 -22.81871 -22.01623 -20.32596 -19.45143 -18.32161 -17.81705 -17.23501 -16.13942 -16.09734 -15.51536 -14.77759 -14.60078 -14.51458 -14.30439 -13.79682 -13.66588 -13.47690 -13.38492 -12.95602 -12.87108 -12.78954 -12.51195 -12.30984 -12.17823 -12.08492 -11.81359 -11.75191 -11.58065 -11.35578 -11.22147 -11.05920 -10.91297 -10.61996 -10.60140 -10.27671 -10.05378 -9.84438 -9.70588 -8.98063 -8.82698 -8.48310 -8.37335 -7.05754 -5.83305 -3.14114 0.44409 1.38893 1.82855 2.24913 3.06293 3.28967 3.39891 3.45265 3.47119 4.39720 4.52661 4.54935 4.68429 4.91725 4.93369 4.94291 5.10993 5.16971 5.23340 5.29236 5.35386 5.42520 5.44042 5.50286 5.52020 5.59872 5.62358 5.67499 5.74213 5.79661 5.84984 5.92685 6.04949 6.09598 6.18593 6.25344 6.32567 6.41762 6.53678 6.58127 6.69609 6.88851 7.63700 7.66782 8.25972 8.33885 9.45393 9.99346 10.34216 11.38794 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.025210 B = 0.002817 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.403455 B = 9938.172769 C =10587.126154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.054 4.054 3 C -0.218 4.218 4 S 0.217 5.783 5 C -0.256 4.256 6 C 0.601 3.399 7 O -0.533 6.533 8 N -0.605 5.605 9 C 0.086 3.914 10 C -0.150 4.150 11 C 0.177 3.823 12 H 0.067 0.933 13 N -0.714 5.714 14 C -0.244 4.244 15 H 0.072 0.928 16 C -0.010 4.010 17 N -0.929 5.929 18 Si 0.908 3.092 19 H -0.289 1.289 20 H -0.281 1.281 21 H -0.291 1.291 22 C 0.129 3.871 23 H 0.081 0.919 24 C -0.154 4.154 25 C -0.054 4.054 26 C -0.122 4.122 27 C -0.092 4.092 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.386 0.614 38 H 0.257 0.743 39 H 0.051 0.949 40 H 0.060 0.940 41 H 0.073 0.927 42 H 0.150 0.850 43 H 0.067 0.933 44 H 0.065 0.935 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.342 -17.401 13.529 25.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.093 4.093 3 C -0.337 4.337 4 S 0.488 5.512 5 C -0.377 4.377 6 C 0.389 3.611 7 O -0.412 6.412 8 N -0.338 5.338 9 C -0.038 4.038 10 C -0.192 4.192 11 C 0.065 3.935 12 H 0.084 0.916 13 N -0.355 5.355 14 C -0.375 4.375 15 H 0.090 0.910 16 C -0.206 4.206 17 N -0.577 5.577 18 Si 0.739 3.261 19 H -0.217 1.217 20 H -0.207 1.207 21 H -0.217 1.217 22 C 0.026 3.974 23 H 0.099 0.901 24 C -0.212 4.212 25 C -0.088 4.088 26 C -0.135 4.135 27 C -0.151 4.151 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.221 0.779 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.091 0.909 42 H 0.168 0.832 43 H 0.086 0.914 44 H 0.084 0.916 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.363 -17.148 12.223 24.940 hybrid contribution 0.505 0.428 0.720 0.978 sum -12.859 -16.720 12.942 24.747 Atomic orbital electron populations 1.21773 0.94204 1.01958 1.02568 1.20110 0.96233 0.89698 1.03233 1.24410 1.07900 1.02375 0.99002 1.83403 1.59423 1.02155 1.06198 1.24528 1.15851 0.99357 0.97926 1.16555 0.77730 0.86042 0.80764 1.90809 1.52416 1.40723 1.57266 1.48402 1.68867 1.11491 1.05060 1.22559 1.00826 0.90234 0.90220 1.23567 0.99788 1.00232 0.95578 1.21242 0.93166 0.89858 0.89196 0.91552 1.42350 1.23982 1.63827 1.05310 1.19192 1.05999 1.29184 0.83146 0.90956 1.24774 0.97325 1.00603 0.97917 1.69669 1.12779 1.41317 1.33904 0.86178 0.77467 0.77282 0.85150 1.21652 1.20678 1.21742 1.21926 0.98693 0.83224 0.93578 0.90127 1.22046 0.97669 0.99236 1.02290 1.20563 0.97327 0.95684 0.95182 1.18600 1.04548 0.93921 0.96404 1.20497 1.02057 1.00685 0.91848 0.92380 0.92020 0.92284 0.90809 0.90016 0.91119 0.90847 0.90240 0.90372 0.77921 0.93340 0.92990 0.92124 0.90853 0.83238 0.91404 0.91582 0.91525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.89 37.16 0.37 -0.55 16 2 C -0.05 -0.38 6.03 -27.89 -0.17 -0.55 16 3 C -0.22 -2.11 5.53 -35.86 -0.20 -2.31 16 4 S 0.22 2.34 18.63 -107.50 -2.00 0.33 16 5 C -0.26 -3.58 6.34 -36.79 -0.23 -3.81 16 6 C 0.60 10.24 7.55 -12.89 -0.10 10.14 16 7 O -0.53 -10.67 16.12 5.19 0.08 -10.59 16 8 N -0.60 -9.87 3.06 -164.58 -0.50 -10.38 16 9 C 0.09 1.19 5.27 -2.53 -0.01 1.17 16 10 C -0.15 -2.45 6.77 -24.58 -0.17 -2.62 16 11 C 0.18 3.37 3.11 -66.10 -0.21 3.16 16 12 H 0.07 1.25 7.84 -51.93 -0.41 0.85 16 13 N -0.71 -17.20 5.25 -51.65 -0.27 -17.47 16 14 C -0.24 -6.48 9.98 -15.06 -0.15 -6.63 16 15 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 16 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 17 N -0.93 -27.52 13.06 55.49 0.72 -26.79 16 18 Si 0.91 21.79 29.55 -169.99 -5.02 16.77 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 C 0.13 2.33 3.18 -66.95 -0.21 2.11 16 23 H 0.08 1.64 7.69 -51.93 -0.40 1.24 16 24 C -0.15 -2.61 9.10 37.16 0.34 -2.27 16 25 C -0.05 -0.68 9.80 -40.43 -0.40 -1.08 16 26 C -0.12 -1.26 5.78 -106.45 -0.62 -1.88 16 27 C -0.09 -0.69 9.84 36.00 0.35 -0.34 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.49 6.57 -51.93 -0.34 0.15 16 33 H 0.07 0.85 7.94 -51.93 -0.41 0.44 16 34 H 0.07 0.92 5.78 -39.44 -0.23 0.69 16 35 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 37 H 0.39 10.08 7.51 -40.82 -0.31 9.78 16 38 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 39 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.06 1.06 7.09 -51.93 -0.37 0.69 16 41 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 42 H 0.15 1.84 8.06 -52.49 -0.42 1.42 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.41 6.54 -51.93 -0.34 0.07 16 45 H 0.07 0.47 8.13 -51.93 -0.42 0.05 16 LS Contribution 373.23 15.07 5.62 5.62 Total: -1.00 -31.08 373.23 -9.86 -40.94 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -7.00 Total: 7.37 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: -1.49 Total: -5.80 kcal Atomic # 7 Polarization: -54.59 SS G_CDS: -0.05 Total: -54.64 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.08 Total: -10.59 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: 2.34 SS G_CDS: -2.00 Total: 0.33 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.08 -9.86 -40.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987493732.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.107 kcal (2) G-P(sol) polarization free energy of solvation -31.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds