Wall clock time and date at job start Tue Mar 31 2020 13:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50694 * 109.47207 * 2 1 4 4 S 1.70621 * 124.51902 * 270.26889 * 3 2 1 5 5 C 1.75839 * 91.56417 * 180.02562 * 4 3 2 6 6 C 1.46576 * 125.46383 * 179.97438 * 5 4 3 7 7 O 1.21697 * 120.00370 * 173.47779 * 6 5 4 8 8 N 1.34787 * 119.99610 * 353.47782 * 6 5 4 9 9 C 1.47423 * 125.64738 * 354.39352 * 8 6 5 10 10 C 1.54914 * 104.83204 * 204.16595 * 9 8 6 11 11 C 1.55157 * 101.57901 * 322.99092 * 10 9 8 12 12 H 1.09001 * 110.71721 * 276.96354 * 11 10 9 13 13 N 1.46499 * 110.71898 * 153.86334 * 11 10 9 14 14 C 1.36937 * 119.99666 * 86.45519 * 13 11 10 15 15 H 1.08002 * 120.00283 * 0.02562 * 14 13 11 16 16 C 1.38812 * 120.00047 * 179.97438 * 14 13 11 17 17 N 1.31620 * 119.99624 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00195 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46829 * 270.00165 * 18 16 14 20 20 H 1.48498 * 109.46897 * 30.00262 * 18 16 14 21 21 H 1.48496 * 109.46888 * 150.00050 * 18 16 14 22 22 C 1.47021 * 125.64781 * 174.43616 * 8 6 5 23 23 H 1.08997 * 109.87844 * 59.48671 * 22 8 6 24 24 C 1.53000 * 109.87992 * 298.32255 * 22 8 6 25 25 C 1.36654 * 109.08009 * 359.69638 * 5 4 3 26 26 C 1.33815 * 124.52547 * 89.99814 * 3 2 1 27 27 C 1.50698 * 122.45008 * 359.97438 * 26 3 2 28 28 H 1.08997 * 109.46842 * 59.99979 * 1 2 3 29 29 H 1.09000 * 109.47521 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47311 * 300.00383 * 1 2 3 31 31 H 1.08996 * 109.46891 * 239.99607 * 2 1 3 32 32 H 1.09006 * 109.46986 * 119.99776 * 2 1 3 33 33 H 1.09001 * 110.37173 * 85.32429 * 9 8 6 34 34 H 1.09006 * 110.36539 * 322.99908 * 9 8 6 35 35 H 1.08997 * 111.00283 * 204.91489 * 10 9 8 36 36 H 1.08998 * 111.03343 * 81.07676 * 10 9 8 37 37 H 0.96993 * 120.00623 * 266.45125 * 13 11 10 38 38 H 0.97006 * 119.99869 * 180.02562 * 17 16 14 39 39 H 1.09002 * 109.46779 * 302.18877 * 24 22 8 40 40 H 1.08996 * 109.47551 * 62.19138 * 24 22 8 41 41 H 1.09003 * 109.46837 * 182.19555 * 24 22 8 42 42 H 1.07998 * 123.35035 * 180.24829 * 25 5 4 43 43 H 1.09004 * 109.47114 * 269.99786 * 27 26 3 44 44 H 1.08995 * 109.47197 * 29.99262 * 27 26 3 45 45 H 1.09001 * 109.47608 * 150.00054 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 16 2.3484 2.3345 -1.4058 5 6 2.8452 3.7238 -0.4493 6 6 3.2980 5.0094 -0.9884 7 8 3.5060 5.9447 -0.2381 8 7 3.4841 5.1557 -2.3154 9 6 3.3837 4.0820 -3.3205 10 6 4.2523 4.5677 -4.5078 11 6 3.9620 6.0919 -4.5029 12 1 3.0356 6.3097 -5.0345 13 7 5.0806 6.8344 -5.0889 14 6 5.1400 7.0268 -6.4434 15 1 4.3620 6.6315 -7.0796 16 6 6.1997 7.7308 -6.9987 17 7 7.1476 8.2130 -6.2232 18 14 6.2811 7.9926 -8.8465 19 1 7.0231 6.8693 -9.4733 20 1 4.9041 8.0464 -9.3999 21 1 6.9807 9.2703 -9.1350 22 6 3.8216 6.4123 -2.9999 23 1 4.7635 6.8028 -2.6145 24 6 2.7048 7.4364 -2.7881 25 6 2.7356 3.4150 0.8774 26 6 2.2851 2.1358 1.1025 27 6 2.0881 1.5803 2.4894 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.3483 3.9530 -3.6358 34 1 3.7781 3.1484 -2.9191 35 1 3.9270 4.1110 -5.4424 36 1 5.3088 4.3707 -4.3259 37 1 5.7792 7.1899 -4.5176 38 1 7.8880 8.7054 -6.6112 39 1 1.7638 7.0295 -3.1585 40 1 2.6115 7.6577 -1.7249 41 1 2.9434 8.3515 -3.3302 42 1 2.9790 4.1069 1.6701 43 1 1.0718 1.7893 2.8235 44 1 2.2516 0.5028 2.4758 45 1 2.7981 2.0470 3.1721 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987493732.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:17 Heat of formation + Delta-G solvation = -18.709632 kcal Electronic energy + Delta-G solvation = -24942.961953 eV Core-core repulsion = 21472.101831 eV Total energy + Delta-G solvation = -3470.860122 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.37029 -39.76244 -38.62980 -35.96657 -34.73490 -33.46594 -32.43321 -31.46028 -30.58858 -28.29873 -26.93268 -26.04463 -24.84926 -23.71245 -23.05458 -21.71767 -20.69438 -19.24793 -19.22802 -18.84253 -17.54288 -17.09809 -16.69105 -16.50107 -15.65431 -15.54766 -15.31169 -15.21606 -14.92780 -14.79680 -14.47726 -14.20351 -14.01386 -13.74480 -13.49239 -13.41245 -13.22848 -13.08768 -13.00356 -12.93539 -12.74764 -12.67869 -12.55447 -12.18873 -12.16888 -12.13454 -11.95288 -11.75623 -11.64820 -11.38587 -11.15978 -10.90505 -9.96949 -9.50783 -9.29995 -9.03698 -7.93478 -5.24061 -0.50932 0.48298 0.96078 1.31983 1.50240 1.51755 1.60054 1.78011 2.09479 2.57870 3.32560 3.43276 3.63565 3.74010 3.79183 3.94974 4.10658 4.13406 4.20260 4.24754 4.33060 4.42883 4.43529 4.46930 4.55089 4.55966 4.61385 4.78436 4.83388 4.87446 4.89557 4.98641 5.01076 5.07315 5.14822 5.16112 5.17409 5.28077 5.34996 5.40320 5.44950 5.55164 5.57066 6.26113 6.38386 6.95536 7.32918 8.03688 8.28099 9.30111 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.025210 B = 0.002817 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.403455 B = 9938.172769 C =10587.126154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.056 4.056 3 C -0.203 4.203 4 S 0.250 5.750 5 C -0.299 4.299 6 C 0.597 3.403 7 O -0.578 6.578 8 N -0.607 5.607 9 C 0.093 3.907 10 C -0.142 4.142 11 C 0.174 3.826 12 H 0.076 0.924 13 N -0.729 5.729 14 C -0.235 4.235 15 H 0.086 0.914 16 C -0.076 4.076 17 N -0.972 5.972 18 Si 0.974 3.026 19 H -0.287 1.287 20 H -0.265 1.265 21 H -0.301 1.301 22 C 0.134 3.866 23 H 0.047 0.953 24 C -0.144 4.144 25 C -0.052 4.052 26 C -0.135 4.135 27 C -0.091 4.091 28 H 0.051 0.949 29 H 0.079 0.921 30 H 0.056 0.944 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.057 0.943 37 H 0.371 0.629 38 H 0.250 0.750 39 H 0.071 0.929 40 H 0.049 0.951 41 H 0.064 0.936 42 H 0.141 0.859 43 H 0.076 0.924 44 H 0.083 0.917 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.690 -20.749 13.153 29.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.095 4.095 3 C -0.322 4.322 4 S 0.521 5.479 5 C -0.418 4.418 6 C 0.387 3.613 7 O -0.460 6.460 8 N -0.339 5.339 9 C -0.031 4.031 10 C -0.183 4.183 11 C 0.064 3.936 12 H 0.094 0.906 13 N -0.368 5.368 14 C -0.367 4.367 15 H 0.104 0.896 16 C -0.268 4.268 17 N -0.623 5.623 18 Si 0.803 3.197 19 H -0.214 1.214 20 H -0.190 1.190 21 H -0.228 1.228 22 C 0.029 3.971 23 H 0.065 0.935 24 C -0.202 4.202 25 C -0.087 4.087 26 C -0.147 4.147 27 C -0.149 4.149 28 H 0.070 0.930 29 H 0.098 0.902 30 H 0.075 0.925 31 H 0.103 0.897 32 H 0.116 0.884 33 H 0.117 0.883 34 H 0.109 0.891 35 H 0.117 0.883 36 H 0.076 0.924 37 H 0.203 0.797 38 H 0.059 0.941 39 H 0.090 0.910 40 H 0.068 0.932 41 H 0.083 0.917 42 H 0.159 0.841 43 H 0.095 0.905 44 H 0.102 0.898 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.770 -20.555 11.831 28.480 hybrid contribution 1.151 1.345 0.950 2.009 sum -14.618 -19.209 12.780 27.314 Atomic orbital electron populations 1.21776 0.93384 1.03060 1.02184 1.20293 0.96793 0.87768 1.04639 1.24848 1.05791 1.03430 0.98176 1.83071 1.58625 1.00217 1.05985 1.24301 1.18869 0.99533 0.99144 1.17024 0.76938 0.86839 0.80453 1.90770 1.54444 1.42570 1.58203 1.48416 1.68683 1.11352 1.05446 1.22678 1.01989 0.89978 0.88425 1.23385 0.99293 0.97852 0.97724 1.21418 0.91831 0.91071 0.89311 0.90569 1.42524 1.24960 1.64640 1.04670 1.19625 1.05471 1.27299 0.84291 0.89619 1.25596 0.97572 1.01547 1.02127 1.69843 1.13665 1.43140 1.35616 0.85128 0.77892 0.76432 0.80221 1.21417 1.18982 1.22838 1.21677 0.97718 0.84519 0.93143 0.93455 1.21938 0.98094 0.98670 1.01517 1.20745 0.96625 0.96656 0.94668 1.18804 1.04681 0.93025 0.98155 1.20559 1.02679 1.01604 0.90074 0.92965 0.90237 0.92526 0.89668 0.88386 0.88253 0.89066 0.88304 0.92377 0.79712 0.94135 0.90995 0.93198 0.91687 0.84086 0.90487 0.89822 0.91427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.89 71.98 0.71 -0.57 16 2 C -0.06 -0.56 6.03 29.85 0.18 -0.38 16 3 C -0.20 -3.33 5.53 24.68 0.14 -3.19 16 4 S 0.25 4.73 18.63 -56.49 -1.05 3.67 16 5 C -0.30 -8.17 6.34 24.08 0.15 -8.01 16 6 C 0.60 20.72 7.55 86.42 0.65 21.37 16 7 O -0.58 -24.30 16.12 -4.34 -0.07 -24.37 16 8 N -0.61 -19.76 3.06 -792.81 -2.43 -22.19 16 9 C 0.09 2.37 5.27 86.86 0.46 2.82 16 10 C -0.14 -4.43 6.77 31.99 0.22 -4.22 16 11 C 0.17 6.55 3.11 46.18 0.14 6.69 16 12 H 0.08 2.75 7.84 -2.39 -0.02 2.73 16 13 N -0.73 -35.75 5.25 -317.33 -1.67 -37.42 16 14 C -0.24 -12.46 9.98 84.03 0.84 -11.62 16 15 H 0.09 4.23 7.83 -2.91 -0.02 4.20 16 16 C -0.08 -4.28 5.50 84.86 0.47 -3.82 16 17 N -0.97 -59.36 13.06 21.65 0.28 -59.08 16 18 Si 0.97 45.05 29.55 68.60 2.03 47.08 16 19 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 20 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 21 H -0.30 -14.31 7.11 99.48 0.71 -13.61 16 22 C 0.13 4.94 3.18 45.34 0.14 5.09 16 23 H 0.05 2.06 7.69 -2.39 -0.02 2.04 16 24 C -0.14 -4.96 9.10 71.98 0.66 -4.30 16 25 C -0.05 -1.29 9.80 21.72 0.21 -1.08 16 26 C -0.14 -2.51 5.78 -21.05 -0.12 -2.63 16 27 C -0.09 -1.13 9.84 71.24 0.70 -0.42 16 28 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 31 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.10 0.74 6.57 -2.38 -0.02 0.72 16 33 H 0.10 2.04 7.94 -2.39 -0.02 2.02 16 34 H 0.09 2.05 5.78 -10.32 -0.06 1.99 16 35 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 36 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.37 20.28 7.51 -92.71 -0.70 19.58 16 38 H 0.25 14.89 8.31 -92.70 -0.77 14.12 16 39 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.05 1.81 7.09 -2.39 -0.02 1.79 16 41 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 42 H 0.14 3.59 8.06 -2.91 -0.02 3.57 16 43 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 44 H 0.08 0.74 6.54 -2.39 -0.02 0.73 16 45 H 0.07 0.83 8.13 -2.39 -0.02 0.81 16 Total: -1.00 -69.66 373.23 2.89 -66.77 By element: Atomic # 1 Polarization: 29.54 SS G_CDS: 0.25 Total: 29.79 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: 5.55 Total: -4.27 kcal Atomic # 7 Polarization: -114.87 SS G_CDS: -3.81 Total: -118.68 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: -0.07 Total: -24.37 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Atomic # 16 Polarization: 4.73 SS G_CDS: -1.05 Total: 3.67 kcal Total: -69.66 2.89 -66.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987493732.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.058 kcal (2) G-P(sol) polarization free energy of solvation -69.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds