Wall clock time and date at job start Tue Mar 31 2020 13:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50699 * 109.47161 * 2 1 4 4 S 1.70614 * 124.52633 * 270.02610 * 3 2 1 5 5 C 1.75826 * 91.56543 * 179.97438 * 4 3 2 6 6 C 1.46584 * 125.45840 * 180.02562 * 5 4 3 7 7 O 1.21705 * 119.99753 * 186.91029 * 6 5 4 8 8 N 1.34770 * 120.00027 * 6.90248 * 6 5 4 9 9 C 1.47418 * 125.64846 * 356.70908 * 8 6 5 10 10 C 1.55124 * 104.94487 * 155.95870 * 9 8 6 11 11 C 1.55159 * 101.48726 * 36.77441 * 10 9 8 12 12 H 1.08997 * 110.72076 * 83.17241 * 11 10 9 13 13 N 1.46499 * 110.71992 * 206.26940 * 11 10 9 14 14 C 1.36932 * 120.00163 * 271.15287 * 13 11 10 15 15 H 1.08008 * 119.99977 * 0.02562 * 14 13 11 16 16 C 1.38804 * 120.00423 * 180.02562 * 14 13 11 17 17 N 1.31623 * 120.00073 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 120.00424 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47281 * 90.00099 * 18 16 14 20 20 H 1.48506 * 109.46840 * 329.99910 * 18 16 14 21 21 H 1.48501 * 109.46960 * 210.00460 * 18 16 14 22 22 C 1.47024 * 125.64713 * 176.65945 * 8 6 5 23 23 H 1.09001 * 109.88499 * 300.51877 * 22 8 6 24 24 C 1.53003 * 110.01136 * 61.60970 * 22 8 6 25 25 C 1.36652 * 109.08530 * 0.26219 * 5 4 3 26 26 C 1.33813 * 124.52117 * 90.00045 * 3 2 1 27 27 C 1.50710 * 122.44955 * 0.04734 * 26 3 2 28 28 H 1.09003 * 109.47170 * 60.00183 * 1 2 3 29 29 H 1.08995 * 109.47326 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47107 * 299.99893 * 1 2 3 31 31 H 1.08999 * 109.47090 * 240.00643 * 2 1 3 32 32 H 1.08999 * 109.47179 * 120.00577 * 2 1 3 33 33 H 1.09000 * 110.36691 * 274.66904 * 9 8 6 34 34 H 1.09000 * 110.37257 * 36.99331 * 9 8 6 35 35 H 1.09001 * 110.93613 * 278.78455 * 10 9 8 36 36 H 1.09003 * 111.16875 * 154.86886 * 10 9 8 37 37 H 0.97002 * 119.99585 * 91.16273 * 13 11 10 38 38 H 0.97006 * 119.99408 * 0.02562 * 17 16 14 39 39 H 1.08994 * 109.47032 * 177.88386 * 24 22 8 40 40 H 1.08997 * 109.46723 * 297.88884 * 24 22 8 41 41 H 1.09003 * 109.46439 * 57.88289 * 24 22 8 42 42 H 1.07999 * 123.35297 * 179.73730 * 25 5 4 43 43 H 1.08998 * 109.47454 * 89.99679 * 27 26 3 44 44 H 1.08999 * 109.46614 * 210.00175 * 27 26 3 45 45 H 1.09005 * 109.46571 * 329.99449 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 16 2.3541 2.3327 -1.4056 5 6 2.8455 3.7237 -0.4490 6 6 3.2988 5.0092 -0.9882 7 8 3.7351 5.8634 -0.2390 8 7 3.2325 5.2452 -2.3134 9 6 2.7926 4.2798 -3.3370 10 6 2.3081 5.1504 -4.5260 11 6 3.3263 6.3206 -4.4872 12 1 4.2457 6.0491 -5.0058 13 7 2.7445 7.5333 -5.0678 14 6 2.8575 7.7712 -6.4116 15 1 3.3751 7.0646 -7.0435 16 6 2.3068 8.9204 -6.9617 17 7 1.6764 9.7819 -6.1916 18 14 2.4602 9.2446 -8.7950 19 1 1.2984 8.6485 -9.5021 20 1 3.7152 8.6339 -9.3023 21 1 2.4892 10.7094 -9.0379 22 6 3.5860 6.5083 -2.9776 23 1 2.9643 7.3165 -2.5921 24 6 5.0629 6.8296 -2.7397 25 6 2.7422 3.4127 0.8776 26 6 2.2851 2.1358 1.1025 27 6 2.0896 1.5795 2.4895 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.6260 3.6494 -3.6470 34 1 1.9749 3.6684 -2.9554 35 1 1.2931 5.5100 -4.3572 36 1 2.3760 4.6045 -5.4670 37 1 2.2795 8.1678 -4.5003 38 1 1.5970 9.6137 -5.2396 39 1 5.3245 7.7471 -3.2665 40 1 5.2387 6.9607 -1.6720 41 1 5.6774 6.0094 -3.1111 42 1 2.9916 4.1024 1.6704 43 1 3.0115 1.1035 2.8234 44 1 1.8305 2.3888 3.1722 45 1 1.2851 0.8441 2.4759 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987493733.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:22 Heat of formation + Delta-G solvation = -0.178970 kcal Electronic energy + Delta-G solvation = -25008.301407 eV Core-core repulsion = 21538.244834 eV Total energy + Delta-G solvation = -3470.056572 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.12073 -38.87294 -37.35124 -34.47839 -34.03914 -31.92762 -31.06682 -30.44273 -28.96249 -27.61392 -25.19511 -24.94556 -23.17255 -22.84493 -22.08176 -20.48918 -19.52426 -18.35744 -17.92698 -17.40074 -16.24752 -16.20281 -15.34481 -14.92849 -14.81071 -14.58650 -14.17791 -14.02908 -13.72232 -13.55911 -13.48433 -12.98699 -12.91593 -12.83053 -12.48367 -12.38669 -12.35344 -12.17765 -11.87598 -11.77173 -11.60295 -11.40473 -11.29837 -10.99896 -10.83659 -10.60759 -10.45568 -10.24585 -10.05602 -9.85002 -9.25060 -8.99650 -8.86414 -8.51848 -8.43309 -7.14192 -6.17105 -3.19319 0.41455 1.35793 1.79671 2.22118 2.98634 3.23704 3.48465 3.52937 3.67128 4.38847 4.48262 4.60801 4.66861 4.83301 4.90441 4.94473 5.05834 5.13704 5.16866 5.20198 5.35735 5.36798 5.43826 5.46257 5.48417 5.58800 5.61479 5.64626 5.65545 5.74844 5.83797 5.86715 5.90700 5.97861 6.15395 6.16400 6.30200 6.33475 6.45531 6.52193 6.61664 6.78455 7.58680 7.73497 8.19606 8.67877 9.11815 9.98462 10.11979 11.30715 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.022997 B = 0.002891 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.269973 B = 9681.389863 C =10425.483787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.053 4.053 3 C -0.220 4.220 4 S 0.218 5.782 5 C -0.259 4.259 6 C 0.601 3.399 7 O -0.533 6.533 8 N -0.605 5.605 9 C 0.089 3.911 10 C -0.150 4.150 11 C 0.182 3.818 12 H 0.069 0.931 13 N -0.725 5.725 14 C -0.336 4.336 15 H 0.067 0.933 16 C -0.041 4.041 17 N -0.940 5.940 18 Si 1.083 2.917 19 H -0.295 1.295 20 H -0.294 1.294 21 H -0.288 1.288 22 C 0.128 3.872 23 H 0.077 0.923 24 C -0.155 4.155 25 C -0.052 4.052 26 C -0.123 4.123 27 C -0.093 4.093 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.369 0.631 38 H 0.256 0.744 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.051 0.949 42 H 0.150 0.850 43 H 0.067 0.933 44 H 0.066 0.934 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.472 -21.652 13.220 25.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.092 4.092 3 C -0.339 4.339 4 S 0.489 5.511 5 C -0.379 4.379 6 C 0.389 3.611 7 O -0.412 6.412 8 N -0.338 5.338 9 C -0.036 4.036 10 C -0.191 4.191 11 C 0.070 3.930 12 H 0.087 0.913 13 N -0.367 5.367 14 C -0.467 4.467 15 H 0.085 0.915 16 C -0.239 4.239 17 N -0.585 5.585 18 Si 0.914 3.086 19 H -0.223 1.223 20 H -0.221 1.221 21 H -0.213 1.213 22 C 0.025 3.975 23 H 0.095 0.905 24 C -0.213 4.213 25 C -0.086 4.086 26 C -0.135 4.135 27 C -0.152 4.152 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.203 0.797 38 H 0.068 0.932 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.071 0.929 42 H 0.168 0.832 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.351 -20.546 10.725 23.180 hybrid contribution 0.244 -0.771 2.962 3.070 sum 0.596 -21.317 13.687 25.340 Atomic orbital electron populations 1.21790 0.94197 1.02004 1.02650 1.20095 0.96255 0.89681 1.03191 1.24547 1.07818 1.02149 0.99344 1.83462 1.60123 1.01517 1.05980 1.24493 1.16170 0.99235 0.97976 1.16577 0.78469 0.85307 0.80698 1.90806 1.46940 1.46038 1.57401 1.48380 1.64994 1.15496 1.04941 1.22629 0.98933 0.92317 0.89695 1.23590 1.01757 0.98082 0.95693 1.21184 0.94980 0.87765 0.89026 0.91269 1.42358 1.66241 1.21335 1.06722 1.20030 1.34982 1.07447 0.84195 0.91475 1.25805 0.98126 0.93176 1.06831 1.70855 1.44327 1.37355 1.05943 0.83194 0.75450 0.76098 0.73884 1.22251 1.22067 1.21350 1.21961 0.96611 0.85037 0.93912 0.90527 1.22053 0.94768 1.01890 1.02566 1.20558 0.97058 0.95810 0.95133 1.18605 1.04526 0.93979 0.96408 1.20504 1.01902 1.00932 0.91850 0.92312 0.91982 0.92245 0.90800 0.90090 0.90859 0.91001 0.90569 0.90064 0.79704 0.93234 0.91073 0.91703 0.92945 0.83242 0.91403 0.91480 0.91562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.89 37.16 0.37 -0.60 16 2 C -0.05 -0.38 5.72 -27.88 -0.16 -0.54 16 3 C -0.22 -2.15 5.53 -35.86 -0.20 -2.35 16 4 S 0.22 2.37 18.51 -107.50 -1.99 0.38 16 5 C -0.26 -3.61 6.37 -36.79 -0.23 -3.85 16 6 C 0.60 10.20 7.62 -12.90 -0.10 10.10 16 7 O -0.53 -10.56 15.79 5.18 0.08 -10.48 16 8 N -0.60 -9.86 3.07 -164.44 -0.50 -10.36 16 9 C 0.09 1.23 5.59 -2.42 -0.01 1.22 16 10 C -0.15 -2.45 6.79 -24.46 -0.17 -2.62 16 11 C 0.18 3.50 3.12 -66.09 -0.21 3.29 16 12 H 0.07 1.34 7.81 -51.93 -0.41 0.93 16 13 N -0.73 -17.45 5.23 -51.65 -0.27 -17.72 16 14 C -0.34 -9.04 9.97 -15.06 -0.15 -9.19 16 15 H 0.07 1.77 7.83 -52.48 -0.41 1.36 16 16 C -0.04 -1.17 5.50 -17.43 -0.10 -1.26 16 17 N -0.94 -28.57 13.70 55.49 0.76 -27.81 16 18 Si 1.08 25.32 29.92 -169.99 -5.09 20.23 16 19 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 C 0.13 2.31 3.22 -66.95 -0.22 2.10 16 23 H 0.08 1.53 7.70 -51.93 -0.40 1.13 16 24 C -0.15 -2.65 9.10 37.16 0.34 -2.31 16 25 C -0.05 -0.66 9.80 -40.43 -0.40 -1.05 16 26 C -0.12 -1.28 5.78 -106.45 -0.62 -1.89 16 27 C -0.09 -0.71 9.56 36.01 0.34 -0.36 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.40 7.81 -51.93 -0.41 0.00 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.49 7.25 -51.93 -0.38 0.12 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.07 0.89 4.95 -28.49 -0.14 0.75 16 35 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.37 9.34 6.37 -40.82 -0.26 9.08 16 38 H 0.26 7.70 6.77 -40.82 -0.28 7.42 16 39 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 40 H 0.06 1.15 6.81 -51.93 -0.35 0.80 16 41 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.15 1.84 8.06 -52.49 -0.42 1.41 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.07 0.48 8.13 -51.93 -0.42 0.06 16 45 H 0.07 0.42 6.86 -51.93 -0.36 0.07 16 LS Contribution 370.73 15.07 5.59 5.59 Total: -1.00 -31.98 370.73 -9.75 -41.73 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -6.83 Total: 7.75 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: -1.50 Total: -9.32 kcal Atomic # 7 Polarization: -55.87 SS G_CDS: -0.02 Total: -55.89 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.08 Total: -10.48 kcal Atomic # 14 Polarization: 25.32 SS G_CDS: -5.09 Total: 20.23 kcal Atomic # 16 Polarization: 2.37 SS G_CDS: -1.99 Total: 0.38 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.98 -9.75 -41.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987493733.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.555 kcal (2) G-P(sol) polarization free energy of solvation -31.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds