Wall clock time and date at job start Tue Mar 31 2020 13:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50699 * 109.47161 * 2 1 4 4 S 1.70614 * 124.52633 * 270.02610 * 3 2 1 5 5 C 1.75826 * 91.56543 * 179.97438 * 4 3 2 6 6 C 1.46584 * 125.45840 * 180.02562 * 5 4 3 7 7 O 1.21705 * 119.99753 * 186.91029 * 6 5 4 8 8 N 1.34770 * 120.00027 * 6.90248 * 6 5 4 9 9 C 1.47418 * 125.64846 * 356.70908 * 8 6 5 10 10 C 1.55124 * 104.94487 * 155.95870 * 9 8 6 11 11 C 1.55159 * 101.48726 * 36.77441 * 10 9 8 12 12 H 1.08997 * 110.72076 * 83.17241 * 11 10 9 13 13 N 1.46499 * 110.71992 * 206.26940 * 11 10 9 14 14 C 1.36932 * 120.00163 * 271.15287 * 13 11 10 15 15 H 1.08008 * 119.99977 * 0.02562 * 14 13 11 16 16 C 1.38804 * 120.00423 * 180.02562 * 14 13 11 17 17 N 1.31623 * 120.00073 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 120.00424 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47281 * 90.00099 * 18 16 14 20 20 H 1.48506 * 109.46840 * 329.99910 * 18 16 14 21 21 H 1.48501 * 109.46960 * 210.00460 * 18 16 14 22 22 C 1.47024 * 125.64713 * 176.65945 * 8 6 5 23 23 H 1.09001 * 109.88499 * 300.51877 * 22 8 6 24 24 C 1.53003 * 110.01136 * 61.60970 * 22 8 6 25 25 C 1.36652 * 109.08530 * 0.26219 * 5 4 3 26 26 C 1.33813 * 124.52117 * 90.00045 * 3 2 1 27 27 C 1.50710 * 122.44955 * 0.04734 * 26 3 2 28 28 H 1.09003 * 109.47170 * 60.00183 * 1 2 3 29 29 H 1.08995 * 109.47326 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47107 * 299.99893 * 1 2 3 31 31 H 1.08999 * 109.47090 * 240.00643 * 2 1 3 32 32 H 1.08999 * 109.47179 * 120.00577 * 2 1 3 33 33 H 1.09000 * 110.36691 * 274.66904 * 9 8 6 34 34 H 1.09000 * 110.37257 * 36.99331 * 9 8 6 35 35 H 1.09001 * 110.93613 * 278.78455 * 10 9 8 36 36 H 1.09003 * 111.16875 * 154.86886 * 10 9 8 37 37 H 0.97002 * 119.99585 * 91.16273 * 13 11 10 38 38 H 0.97006 * 119.99408 * 0.02562 * 17 16 14 39 39 H 1.08994 * 109.47032 * 177.88386 * 24 22 8 40 40 H 1.08997 * 109.46723 * 297.88884 * 24 22 8 41 41 H 1.09003 * 109.46439 * 57.88289 * 24 22 8 42 42 H 1.07999 * 123.35297 * 179.73730 * 25 5 4 43 43 H 1.08998 * 109.47454 * 89.99679 * 27 26 3 44 44 H 1.08999 * 109.46614 * 210.00175 * 27 26 3 45 45 H 1.09005 * 109.46571 * 329.99449 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 16 2.3541 2.3327 -1.4056 5 6 2.8455 3.7237 -0.4490 6 6 3.2988 5.0092 -0.9882 7 8 3.7351 5.8634 -0.2390 8 7 3.2325 5.2452 -2.3134 9 6 2.7926 4.2798 -3.3370 10 6 2.3081 5.1504 -4.5260 11 6 3.3263 6.3206 -4.4872 12 1 4.2457 6.0491 -5.0058 13 7 2.7445 7.5333 -5.0678 14 6 2.8575 7.7712 -6.4116 15 1 3.3751 7.0646 -7.0435 16 6 2.3068 8.9204 -6.9617 17 7 1.6764 9.7819 -6.1916 18 14 2.4602 9.2446 -8.7950 19 1 1.2984 8.6485 -9.5021 20 1 3.7152 8.6339 -9.3023 21 1 2.4892 10.7094 -9.0379 22 6 3.5860 6.5083 -2.9776 23 1 2.9643 7.3165 -2.5921 24 6 5.0629 6.8296 -2.7397 25 6 2.7422 3.4127 0.8776 26 6 2.2851 2.1358 1.1025 27 6 2.0896 1.5795 2.4895 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.6260 3.6494 -3.6470 34 1 1.9749 3.6684 -2.9554 35 1 1.2931 5.5100 -4.3572 36 1 2.3760 4.6045 -5.4670 37 1 2.2795 8.1678 -4.5003 38 1 1.5970 9.6137 -5.2396 39 1 5.3245 7.7471 -3.2665 40 1 5.2387 6.9607 -1.6720 41 1 5.6774 6.0094 -3.1111 42 1 2.9916 4.1024 1.6704 43 1 3.0115 1.1035 2.8234 44 1 1.8305 2.3888 3.1722 45 1 1.2851 0.8441 2.4759 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987493733.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:21 Heat of formation + Delta-G solvation = -18.747475 kcal Electronic energy + Delta-G solvation = -25009.106598 eV Core-core repulsion = 21538.244834 eV Total energy + Delta-G solvation = -3470.861763 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.45101 -39.81175 -38.71030 -36.30768 -34.78534 -33.53444 -32.49583 -31.41642 -30.49484 -28.35057 -26.78517 -26.04174 -24.99606 -23.75139 -23.12466 -21.89345 -20.75386 -19.50962 -19.27231 -18.89820 -17.59706 -17.27136 -16.67603 -16.49990 -15.99673 -15.60935 -15.44716 -15.16148 -15.01508 -14.86101 -14.61280 -14.19981 -14.03132 -13.82505 -13.68790 -13.44287 -13.29007 -13.09921 -13.03407 -12.78516 -12.75593 -12.65945 -12.53030 -12.21638 -12.21105 -12.00842 -11.86056 -11.82530 -11.43242 -11.30004 -11.14646 -10.89787 -10.04115 -9.54688 -9.34054 -9.15739 -8.38283 -5.34708 -0.54590 0.44074 0.91530 1.28570 1.60632 1.69832 1.71583 1.85012 2.04670 2.72588 3.26401 3.40215 3.51172 3.65300 3.73315 3.83509 4.00974 4.08903 4.15288 4.17872 4.21632 4.31989 4.40161 4.43768 4.47233 4.49608 4.52713 4.73240 4.79551 4.84188 4.85058 4.90626 4.99897 5.04723 5.07141 5.08999 5.11168 5.19743 5.29007 5.30635 5.41398 5.54342 5.61872 6.30279 6.47975 6.88872 7.04719 7.93573 8.07116 9.12911 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.022997 B = 0.002891 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.269973 B = 9681.389863 C =10425.483787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.055 4.055 3 C -0.205 4.205 4 S 0.248 5.752 5 C -0.300 4.300 6 C 0.597 3.403 7 O -0.575 6.575 8 N -0.606 5.606 9 C 0.095 3.905 10 C -0.141 4.141 11 C 0.178 3.822 12 H 0.075 0.925 13 N -0.740 5.740 14 C -0.325 4.325 15 H 0.076 0.924 16 C -0.105 4.105 17 N -0.978 5.978 18 Si 1.130 2.870 19 H -0.284 1.284 20 H -0.269 1.269 21 H -0.299 1.299 22 C 0.134 3.866 23 H 0.047 0.953 24 C -0.144 4.144 25 C -0.050 4.050 26 C -0.135 4.135 27 C -0.092 4.092 28 H 0.050 0.950 29 H 0.080 0.920 30 H 0.055 0.945 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.091 0.909 35 H 0.058 0.942 36 H 0.098 0.902 37 H 0.358 0.642 38 H 0.243 0.757 39 H 0.061 0.939 40 H 0.054 0.946 41 H 0.069 0.931 42 H 0.142 0.858 43 H 0.078 0.922 44 H 0.067 0.933 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.529 -25.572 12.900 28.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.094 4.094 3 C -0.324 4.324 4 S 0.519 5.481 5 C -0.420 4.420 6 C 0.388 3.612 7 O -0.457 6.457 8 N -0.339 5.339 9 C -0.028 4.028 10 C -0.182 4.182 11 C 0.068 3.932 12 H 0.092 0.908 13 N -0.381 5.381 14 C -0.456 4.456 15 H 0.094 0.906 16 C -0.296 4.296 17 N -0.626 5.626 18 Si 0.955 3.045 19 H -0.211 1.211 20 H -0.194 1.194 21 H -0.225 1.225 22 C 0.029 3.971 23 H 0.065 0.935 24 C -0.203 4.203 25 C -0.085 4.085 26 C -0.147 4.147 27 C -0.150 4.150 28 H 0.069 0.931 29 H 0.099 0.901 30 H 0.075 0.925 31 H 0.105 0.895 32 H 0.116 0.884 33 H 0.119 0.881 34 H 0.108 0.892 35 H 0.076 0.924 36 H 0.117 0.883 37 H 0.190 0.810 38 H 0.053 0.947 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.088 0.912 42 H 0.160 0.840 43 H 0.097 0.903 44 H 0.086 0.914 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.425 -24.547 10.407 26.666 hybrid contribution 0.221 0.299 3.180 3.201 sum 0.647 -24.248 13.587 27.803 Atomic orbital electron populations 1.21798 0.93586 1.03104 1.02122 1.20274 0.96621 0.87786 1.04714 1.24968 1.05767 1.03210 0.98459 1.83118 1.59358 0.99744 1.05873 1.24280 1.19180 0.99378 0.99178 1.17033 0.77710 0.86098 0.80376 1.90768 1.48905 1.47765 1.58265 1.48388 1.64983 1.15150 1.05368 1.22744 1.00542 0.91674 0.87848 1.23403 0.99743 0.97230 0.97787 1.21353 0.95640 0.86945 0.89248 0.90757 1.42535 1.66683 1.22834 1.06021 1.20383 1.32976 1.06846 0.85405 0.90569 1.27205 0.98428 0.93601 1.10344 1.70971 1.47201 1.38923 1.05470 0.82589 0.76773 0.75434 0.69682 1.21093 1.19421 1.22534 1.21698 0.96631 0.85417 0.93332 0.93452 1.21944 0.94428 1.02091 1.01789 1.20747 0.96327 0.96764 0.94622 1.18820 1.04603 0.93101 0.98153 1.20566 1.03041 1.01340 0.90061 0.93128 0.90131 0.92548 0.89541 0.88351 0.88105 0.89179 0.92353 0.88347 0.81015 0.94692 0.91995 0.92725 0.91177 0.83983 0.90332 0.91367 0.89947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.89 71.98 0.71 -0.71 16 2 C -0.06 -0.57 5.72 29.85 0.17 -0.40 16 3 C -0.20 -3.40 5.53 24.68 0.14 -3.27 16 4 S 0.25 4.77 18.51 -56.49 -1.05 3.72 16 5 C -0.30 -8.23 6.37 24.08 0.15 -8.08 16 6 C 0.60 20.62 7.62 86.42 0.66 21.27 16 7 O -0.57 -23.83 15.79 -4.36 -0.07 -23.90 16 8 N -0.61 -19.73 3.07 -792.39 -2.43 -22.16 16 9 C 0.10 2.46 5.59 86.93 0.49 2.94 16 10 C -0.14 -4.44 6.79 32.06 0.22 -4.23 16 11 C 0.18 6.81 3.12 46.18 0.14 6.95 16 12 H 0.07 2.79 7.81 -2.39 -0.02 2.77 16 13 N -0.74 -36.36 5.23 -317.33 -1.66 -38.02 16 14 C -0.33 -17.50 9.97 84.03 0.84 -16.66 16 15 H 0.08 3.90 7.83 -2.91 -0.02 3.88 16 16 C -0.10 -5.97 5.50 84.86 0.47 -5.50 16 17 N -0.98 -61.17 13.70 21.65 0.30 -60.87 16 18 Si 1.13 50.88 29.92 68.60 2.05 52.94 16 19 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 20 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 21 H -0.30 -13.88 7.11 99.48 0.71 -13.18 16 22 C 0.13 4.94 3.22 45.34 0.15 5.09 16 23 H 0.05 2.02 7.70 -2.39 -0.02 2.01 16 24 C -0.14 -5.05 9.10 71.98 0.65 -4.39 16 25 C -0.05 -1.23 9.80 21.72 0.21 -1.02 16 26 C -0.14 -2.53 5.78 -21.05 -0.12 -2.65 16 27 C -0.09 -1.14 9.56 71.24 0.68 -0.46 16 28 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.06 0.59 7.81 -2.39 -0.02 0.57 16 31 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.10 0.75 7.25 -2.39 -0.02 0.73 16 33 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.09 2.03 4.95 -17.29 -0.09 1.94 16 35 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.10 2.78 8.14 -2.39 -0.02 2.77 16 37 H 0.36 19.02 6.37 -92.71 -0.59 18.43 16 38 H 0.24 15.27 6.77 -92.70 -0.63 14.64 16 39 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.05 2.01 6.81 -2.39 -0.02 2.00 16 41 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 42 H 0.14 3.59 8.06 -2.91 -0.02 3.57 16 43 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.07 0.84 8.13 -2.39 -0.02 0.82 16 45 H 0.08 0.77 6.86 -2.38 -0.02 0.75 16 Total: -1.00 -71.45 370.73 3.17 -68.29 By element: Atomic # 1 Polarization: 30.63 SS G_CDS: 0.47 Total: 31.10 kcal Atomic # 6 Polarization: -16.65 SS G_CDS: 5.56 Total: -11.09 kcal Atomic # 7 Polarization: -117.25 SS G_CDS: -3.80 Total: -121.05 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -0.07 Total: -23.90 kcal Atomic # 14 Polarization: 50.88 SS G_CDS: 2.05 Total: 52.94 kcal Atomic # 16 Polarization: 4.77 SS G_CDS: -1.05 Total: 3.72 kcal Total: -71.45 3.17 -68.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987493733.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.538 kcal (2) G-P(sol) polarization free energy of solvation -71.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds