Wall clock time and date at job start Tue Mar 31 2020 13:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50695 * 109.47580 * 2 1 4 4 S 1.70617 * 124.51952 * 269.97643 * 3 2 1 5 5 C 1.75828 * 91.56152 * 180.02562 * 4 3 2 6 6 C 1.46589 * 125.46059 * 179.97438 * 5 4 3 7 7 O 1.21700 * 120.00363 * 174.06376 * 6 5 4 8 8 N 1.34783 * 119.99513 * 354.06701 * 6 5 4 9 9 C 1.47424 * 125.65093 * 354.40176 * 8 6 5 10 10 C 1.54906 * 104.83134 * 204.16487 * 9 8 6 11 11 C 1.55157 * 101.58250 * 322.98795 * 10 9 8 12 12 H 1.08993 * 110.72004 * 277.14128 * 11 10 9 13 13 N 1.46503 * 110.71921 * 153.86469 * 11 10 9 14 14 C 1.36932 * 119.99923 * 91.47835 * 13 11 10 15 15 H 1.08007 * 119.99903 * 0.02562 * 14 13 11 16 16 C 1.38813 * 120.00382 * 180.02562 * 14 13 11 17 17 N 1.31618 * 120.00129 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 119.99576 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47195 * 89.99928 * 18 16 14 20 20 H 1.48504 * 109.47106 * 209.99957 * 18 16 14 21 21 H 1.48499 * 109.47365 * 330.00010 * 18 16 14 22 22 C 1.47025 * 125.64351 * 174.44392 * 8 6 5 23 23 H 1.09000 * 109.88411 * 298.47235 * 22 8 6 24 24 C 1.53000 * 109.88248 * 59.48777 * 22 8 6 25 25 C 1.36649 * 109.08658 * 0.24445 * 5 4 3 26 26 C 1.33816 * 124.52389 * 89.99686 * 3 2 1 27 27 C 1.50699 * 122.44996 * 359.95817 * 26 3 2 28 28 H 1.08993 * 109.46960 * 60.00010 * 1 2 3 29 29 H 1.09000 * 109.47126 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46744 * 300.00139 * 1 2 3 31 31 H 1.09001 * 109.47325 * 239.99469 * 2 1 3 32 32 H 1.09005 * 109.47206 * 119.99766 * 2 1 3 33 33 H 1.09000 * 110.36742 * 323.00656 * 9 8 6 34 34 H 1.08999 * 110.36478 * 85.32364 * 9 8 6 35 35 H 1.08997 * 111.00371 * 81.06986 * 10 9 8 36 36 H 1.09001 * 111.00171 * 204.87821 * 10 9 8 37 37 H 0.96999 * 119.99848 * 271.48434 * 13 11 10 38 38 H 0.97006 * 119.99487 * 180.02562 * 17 16 14 39 39 H 1.08998 * 109.46758 * 58.54781 * 24 22 8 40 40 H 1.09000 * 109.46791 * 178.53816 * 24 22 8 41 41 H 1.08989 * 109.47338 * 298.54505 * 24 22 8 42 42 H 1.07997 * 123.35168 * 179.75943 * 25 5 4 43 43 H 1.09000 * 109.46970 * 90.00189 * 27 26 3 44 44 H 1.09000 * 109.46778 * 210.00265 * 27 26 3 45 45 H 1.09002 * 109.46761 * 329.99932 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 16 2.3554 2.3321 -1.4058 5 6 2.8476 3.7229 -0.4492 6 6 3.3031 5.0076 -0.9884 7 8 3.5178 5.9410 -0.2375 8 7 3.4842 5.1551 -2.3159 9 6 3.3753 4.0834 -3.3223 10 6 4.2407 4.5675 -4.5123 11 6 3.9565 6.0928 -4.5040 12 1 3.0272 6.3147 -5.0287 13 7 5.0756 6.8318 -5.0936 14 6 5.0789 7.1152 -6.4333 15 1 4.2562 6.7943 -7.0552 16 6 6.1395 7.8150 -6.9922 17 7 6.1424 8.0878 -8.2798 18 14 7.5627 8.3694 -5.9167 19 1 8.6021 7.3093 -5.8860 20 1 8.1451 9.6178 -6.4712 21 1 7.0722 8.6218 -4.5380 22 6 3.8238 6.4115 -2.9998 23 1 3.0330 7.1449 -2.8423 24 6 5.1504 6.9536 -2.4638 25 6 2.7433 3.4123 0.8774 26 6 2.2852 2.1358 1.1025 27 6 2.0878 1.5804 2.4894 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 3.7674 3.1476 -2.9239 34 1 2.3380 3.9591 -3.6333 35 1 5.2970 4.3659 -4.3347 36 1 3.9100 4.1130 -5.4462 37 1 5.8143 7.1203 -4.5350 38 1 6.8838 8.5765 -8.6703 39 1 5.9345 6.2123 -2.6177 40 1 5.4085 7.8707 -2.9933 41 1 5.0531 7.1640 -1.3988 42 1 2.9926 4.1021 1.6701 43 1 3.0088 1.1033 2.8243 44 1 1.8292 2.3902 3.1716 45 1 1.2824 0.8460 2.4754 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987493734.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:26 Heat of formation + Delta-G solvation = 9.891026 kcal Electronic energy + Delta-G solvation = -25121.253148 eV Core-core repulsion = 21651.633244 eV Total energy + Delta-G solvation = -3469.619905 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.18789 -38.91904 -37.44796 -34.41916 -34.03617 -31.91676 -30.93837 -30.59844 -29.39608 -27.63400 -25.56734 -25.07686 -23.12846 -22.77010 -22.26879 -20.22539 -19.09620 -18.37690 -18.12461 -17.74403 -16.23861 -15.90728 -15.82673 -14.87860 -14.72403 -14.52226 -14.34608 -14.12422 -13.75479 -13.51482 -13.33877 -12.99832 -12.90951 -12.70930 -12.53448 -12.43261 -12.28528 -12.11639 -11.86475 -11.81200 -11.63469 -11.44414 -11.40894 -11.21386 -10.97779 -10.68825 -10.60418 -10.32588 -10.12212 -9.83934 -9.58055 -9.02291 -8.88452 -8.53389 -8.45797 -7.37143 -5.84384 -3.21423 0.38931 1.33958 1.77991 2.19300 2.97343 3.21541 3.33318 3.36505 3.42225 4.36603 4.46914 4.52774 4.64988 4.83264 4.87937 4.92120 5.03737 5.11144 5.11898 5.16536 5.33532 5.34883 5.42048 5.44703 5.46443 5.50833 5.56698 5.62023 5.63226 5.74069 5.80296 5.82176 5.88821 6.00318 6.11422 6.14834 6.27807 6.35970 6.44022 6.54395 6.57858 6.79965 7.57234 7.90333 8.17936 8.34336 9.11450 9.83726 10.02413 11.33376 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.026604 B = 0.002996 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.205880 B = 9344.397710 C =10027.852682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.054 4.054 3 C -0.217 4.217 4 S 0.219 5.781 5 C -0.259 4.259 6 C 0.602 3.398 7 O -0.533 6.533 8 N -0.606 5.606 9 C 0.085 3.915 10 C -0.148 4.148 11 C 0.180 3.820 12 H 0.077 0.923 13 N -0.739 5.739 14 C -0.250 4.250 15 H 0.092 0.908 16 C 0.009 3.991 17 N -0.930 5.930 18 Si 0.878 3.122 19 H -0.283 1.283 20 H -0.289 1.289 21 H -0.275 1.275 22 C 0.127 3.873 23 H 0.078 0.922 24 C -0.165 4.165 25 C -0.053 4.053 26 C -0.123 4.123 27 C -0.093 4.093 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.368 0.632 38 H 0.261 0.739 39 H 0.054 0.946 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.150 0.850 43 H 0.067 0.933 44 H 0.066 0.934 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.495 -17.608 18.418 27.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.093 4.093 3 C -0.336 4.336 4 S 0.490 5.510 5 C -0.379 4.379 6 C 0.390 3.610 7 O -0.412 6.412 8 N -0.339 5.339 9 C -0.039 4.039 10 C -0.189 4.189 11 C 0.069 3.931 12 H 0.095 0.905 13 N -0.383 5.383 14 C -0.379 4.379 15 H 0.110 0.890 16 C -0.187 4.187 17 N -0.577 5.577 18 Si 0.708 3.292 19 H -0.210 1.210 20 H -0.215 1.215 21 H -0.201 1.201 22 C 0.024 3.976 23 H 0.096 0.904 24 C -0.223 4.223 25 C -0.087 4.087 26 C -0.135 4.135 27 C -0.152 4.152 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.103 0.897 37 H 0.204 0.796 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.167 0.833 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.538 -17.350 17.037 26.502 hybrid contribution 1.229 0.608 2.168 2.565 sum -9.309 -16.742 19.205 27.125 Atomic orbital electron populations 1.21787 0.94185 1.02015 1.02604 1.20102 0.96254 0.89647 1.03276 1.24434 1.07772 1.02375 0.98997 1.83413 1.59407 1.02018 1.06155 1.24509 1.16106 0.99331 0.97951 1.16563 0.77626 0.86069 0.80713 1.90800 1.52343 1.40765 1.57260 1.48413 1.68792 1.11632 1.05108 1.22570 1.01050 0.90252 0.90075 1.23516 0.99719 0.99736 0.95941 1.21149 0.92990 0.89827 0.89168 0.90503 1.42951 1.21347 1.66573 1.07446 1.19065 1.05818 1.30192 0.82857 0.88978 1.24649 0.98236 1.00232 0.95569 1.69693 1.32790 1.45112 1.10078 0.86666 0.83666 0.78538 0.80296 1.20950 1.21537 1.20098 1.21929 0.97622 0.84710 0.93348 0.90425 1.22110 0.96514 1.01671 1.02023 1.20559 0.97194 0.95738 0.95163 1.18608 1.04512 0.93969 0.96418 1.20503 1.01927 1.00940 0.91824 0.92315 0.91970 0.92269 0.90727 0.90067 0.90749 0.90790 0.90578 0.89711 0.79554 0.92921 0.92651 0.90723 0.91341 0.83259 0.91391 0.91469 0.91549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.90 37.16 0.37 -0.52 16 2 C -0.05 -0.36 5.72 -27.88 -0.16 -0.52 16 3 C -0.22 -2.01 5.53 -35.86 -0.20 -2.21 16 4 S 0.22 2.24 18.62 -107.50 -2.00 0.24 16 5 C -0.26 -3.44 6.34 -36.79 -0.23 -3.68 16 6 C 0.60 9.74 7.62 -12.89 -0.10 9.65 16 7 O -0.53 -10.14 15.56 5.19 0.08 -10.06 16 8 N -0.61 -9.35 3.08 -164.57 -0.51 -9.86 16 9 C 0.08 1.10 5.28 -2.53 -0.01 1.09 16 10 C -0.15 -2.28 6.77 -24.58 -0.17 -2.44 16 11 C 0.18 3.28 3.48 -66.09 -0.23 3.05 16 12 H 0.08 1.40 8.09 -51.93 -0.42 0.98 16 13 N -0.74 -16.66 4.74 -51.65 -0.25 -16.90 16 14 C -0.25 -6.72 10.44 -15.06 -0.16 -6.88 16 15 H 0.09 2.63 8.06 -52.48 -0.42 2.21 16 16 C 0.01 0.27 5.50 -17.43 -0.10 0.17 16 17 N -0.93 -28.46 13.97 55.49 0.78 -27.69 16 18 Si 0.88 21.66 27.74 -169.99 -4.71 16.95 16 19 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 21 H -0.27 -6.39 6.48 56.52 0.37 -6.02 16 22 C 0.13 2.17 3.51 -66.95 -0.24 1.94 16 23 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 24 C -0.17 -2.95 7.91 37.16 0.29 -2.66 16 25 C -0.05 -0.64 9.80 -40.43 -0.40 -1.04 16 26 C -0.12 -1.22 5.78 -106.45 -0.62 -1.83 16 27 C -0.09 -0.67 9.55 36.00 0.34 -0.32 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.37 7.80 -51.93 -0.41 -0.04 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.47 7.25 -51.93 -0.38 0.09 16 33 H 0.07 0.87 5.75 -38.80 -0.22 0.64 16 34 H 0.07 0.84 7.95 -51.93 -0.41 0.43 16 35 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.37 8.28 2.92 -40.82 -0.12 8.16 16 38 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 39 H 0.05 0.98 8.01 -51.93 -0.42 0.57 16 40 H 0.07 1.41 6.78 -51.93 -0.35 1.05 16 41 H 0.07 1.24 6.58 -51.94 -0.34 0.90 16 42 H 0.15 1.76 8.06 -52.49 -0.42 1.33 16 43 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.07 0.45 8.13 -51.93 -0.42 0.03 16 45 H 0.07 0.40 6.86 -51.93 -0.36 0.04 16 LS Contribution 365.09 15.07 5.50 5.50 Total: -1.00 -31.81 365.09 -9.52 -41.33 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -6.82 Total: 6.68 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: -1.59 Total: -6.20 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: 0.02 Total: -54.45 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.08 Total: -10.06 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.71 Total: 16.95 kcal Atomic # 16 Polarization: 2.24 SS G_CDS: -2.00 Total: 0.24 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.81 -9.52 -41.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987493734.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.222 kcal (2) G-P(sol) polarization free energy of solvation -31.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds