Wall clock time and date at job start Tue Mar 31 2020 13:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50695 * 109.47580 * 2 1 4 4 S 1.70617 * 124.51952 * 269.97643 * 3 2 1 5 5 C 1.75828 * 91.56152 * 180.02562 * 4 3 2 6 6 C 1.46589 * 125.46059 * 179.97438 * 5 4 3 7 7 O 1.21700 * 120.00363 * 174.06376 * 6 5 4 8 8 N 1.34783 * 119.99513 * 354.06701 * 6 5 4 9 9 C 1.47424 * 125.65093 * 354.40176 * 8 6 5 10 10 C 1.54906 * 104.83134 * 204.16487 * 9 8 6 11 11 C 1.55157 * 101.58250 * 322.98795 * 10 9 8 12 12 H 1.08993 * 110.72004 * 277.14128 * 11 10 9 13 13 N 1.46503 * 110.71921 * 153.86469 * 11 10 9 14 14 C 1.36932 * 119.99923 * 91.47835 * 13 11 10 15 15 H 1.08007 * 119.99903 * 0.02562 * 14 13 11 16 16 C 1.38813 * 120.00382 * 180.02562 * 14 13 11 17 17 N 1.31618 * 120.00129 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 119.99576 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47195 * 89.99928 * 18 16 14 20 20 H 1.48504 * 109.47106 * 209.99957 * 18 16 14 21 21 H 1.48499 * 109.47365 * 330.00010 * 18 16 14 22 22 C 1.47025 * 125.64351 * 174.44392 * 8 6 5 23 23 H 1.09000 * 109.88411 * 298.47235 * 22 8 6 24 24 C 1.53000 * 109.88248 * 59.48777 * 22 8 6 25 25 C 1.36649 * 109.08658 * 0.24445 * 5 4 3 26 26 C 1.33816 * 124.52389 * 89.99686 * 3 2 1 27 27 C 1.50699 * 122.44996 * 359.95817 * 26 3 2 28 28 H 1.08993 * 109.46960 * 60.00010 * 1 2 3 29 29 H 1.09000 * 109.47126 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46744 * 300.00139 * 1 2 3 31 31 H 1.09001 * 109.47325 * 239.99469 * 2 1 3 32 32 H 1.09005 * 109.47206 * 119.99766 * 2 1 3 33 33 H 1.09000 * 110.36742 * 323.00656 * 9 8 6 34 34 H 1.08999 * 110.36478 * 85.32364 * 9 8 6 35 35 H 1.08997 * 111.00371 * 81.06986 * 10 9 8 36 36 H 1.09001 * 111.00171 * 204.87821 * 10 9 8 37 37 H 0.96999 * 119.99848 * 271.48434 * 13 11 10 38 38 H 0.97006 * 119.99487 * 180.02562 * 17 16 14 39 39 H 1.08998 * 109.46758 * 58.54781 * 24 22 8 40 40 H 1.09000 * 109.46791 * 178.53816 * 24 22 8 41 41 H 1.08989 * 109.47338 * 298.54505 * 24 22 8 42 42 H 1.07997 * 123.35168 * 179.75943 * 25 5 4 43 43 H 1.09000 * 109.46970 * 90.00189 * 27 26 3 44 44 H 1.09000 * 109.46778 * 210.00265 * 27 26 3 45 45 H 1.09002 * 109.46761 * 329.99932 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 16 2.3554 2.3321 -1.4058 5 6 2.8476 3.7229 -0.4492 6 6 3.3031 5.0076 -0.9884 7 8 3.5178 5.9410 -0.2375 8 7 3.4842 5.1551 -2.3159 9 6 3.3753 4.0834 -3.3223 10 6 4.2407 4.5675 -4.5123 11 6 3.9565 6.0928 -4.5040 12 1 3.0272 6.3147 -5.0287 13 7 5.0756 6.8318 -5.0936 14 6 5.0789 7.1152 -6.4333 15 1 4.2562 6.7943 -7.0552 16 6 6.1395 7.8150 -6.9922 17 7 6.1424 8.0878 -8.2798 18 14 7.5627 8.3694 -5.9167 19 1 8.6021 7.3093 -5.8860 20 1 8.1451 9.6178 -6.4712 21 1 7.0722 8.6218 -4.5380 22 6 3.8238 6.4115 -2.9998 23 1 3.0330 7.1449 -2.8423 24 6 5.1504 6.9536 -2.4638 25 6 2.7433 3.4123 0.8774 26 6 2.2852 2.1358 1.1025 27 6 2.0878 1.5804 2.4894 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 3.7674 3.1476 -2.9239 34 1 2.3380 3.9591 -3.6333 35 1 5.2970 4.3659 -4.3347 36 1 3.9100 4.1130 -5.4462 37 1 5.8143 7.1203 -4.5350 38 1 6.8838 8.5765 -8.6703 39 1 5.9345 6.2123 -2.6177 40 1 5.4085 7.8707 -2.9933 41 1 5.0531 7.1640 -1.3988 42 1 2.9926 4.1021 1.6701 43 1 3.0088 1.1033 2.8243 44 1 1.8292 2.3902 3.1716 45 1 1.2824 0.8460 2.4754 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987493734.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:25 Heat of formation + Delta-G solvation = -8.486071 kcal Electronic energy + Delta-G solvation = -25122.050039 eV Core-core repulsion = 21651.633244 eV Total energy + Delta-G solvation = -3470.416795 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.45201 -39.80878 -38.72609 -36.11342 -34.74202 -33.71407 -32.29293 -31.67759 -30.71391 -28.32574 -27.04792 -26.15023 -24.78075 -23.81305 -23.14948 -21.40139 -20.47448 -19.91447 -19.22502 -18.97457 -17.36167 -17.08622 -16.98323 -16.45486 -15.98433 -15.54845 -15.54242 -15.15434 -14.92140 -14.71166 -14.57126 -14.20050 -14.01584 -13.75829 -13.60224 -13.43599 -13.24078 -13.20791 -13.06691 -12.98516 -12.89647 -12.77621 -12.57645 -12.27784 -12.19437 -12.03870 -11.95171 -11.75726 -11.66951 -11.39459 -11.08949 -10.96844 -9.97724 -9.51432 -9.35975 -9.27880 -8.02689 -5.36381 -0.50897 0.48634 0.96073 1.31563 1.37305 1.37852 1.44741 1.76396 2.09512 2.46650 3.24124 3.37765 3.49885 3.66843 3.75121 3.85420 4.05100 4.11371 4.21094 4.22141 4.26473 4.39428 4.42374 4.46989 4.51729 4.53258 4.58563 4.73029 4.82689 4.86146 4.88999 4.95145 5.02256 5.06930 5.10556 5.13424 5.16418 5.21954 5.32759 5.39287 5.44157 5.56637 5.77657 6.21073 6.36457 6.95018 7.05948 7.80539 7.98969 9.18209 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.026604 B = 0.002996 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.205880 B = 9344.397710 C =10027.852682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.056 4.056 3 C -0.204 4.204 4 S 0.248 5.752 5 C -0.298 4.298 6 C 0.599 3.401 7 O -0.573 6.573 8 N -0.607 5.607 9 C 0.091 3.909 10 C -0.140 4.140 11 C 0.172 3.828 12 H 0.077 0.923 13 N -0.744 5.744 14 C -0.226 4.226 15 H 0.068 0.932 16 C -0.057 4.057 17 N -0.979 5.979 18 Si 0.938 3.062 19 H -0.278 1.278 20 H -0.296 1.296 21 H -0.255 1.255 22 C 0.132 3.868 23 H 0.074 0.926 24 C -0.157 4.157 25 C -0.052 4.052 26 C -0.135 4.135 27 C -0.092 4.092 28 H 0.051 0.949 29 H 0.078 0.922 30 H 0.056 0.944 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.067 0.933 36 H 0.095 0.905 37 H 0.369 0.631 38 H 0.257 0.743 39 H 0.054 0.946 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.143 0.857 43 H 0.076 0.924 44 H 0.068 0.932 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.327 -20.476 20.318 30.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.095 4.095 3 C -0.323 4.323 4 S 0.519 5.481 5 C -0.418 4.418 6 C 0.390 3.610 7 O -0.455 6.455 8 N -0.339 5.339 9 C -0.032 4.032 10 C -0.180 4.180 11 C 0.063 3.937 12 H 0.095 0.905 13 N -0.389 5.389 14 C -0.357 4.357 15 H 0.086 0.914 16 C -0.248 4.248 17 N -0.629 5.629 18 Si 0.766 3.234 19 H -0.205 1.205 20 H -0.223 1.223 21 H -0.180 1.180 22 C 0.028 3.972 23 H 0.092 0.908 24 C -0.216 4.216 25 C -0.086 4.086 26 C -0.147 4.147 27 C -0.150 4.150 28 H 0.070 0.930 29 H 0.097 0.903 30 H 0.075 0.925 31 H 0.103 0.897 32 H 0.115 0.885 33 H 0.112 0.888 34 H 0.115 0.885 35 H 0.086 0.914 36 H 0.113 0.887 37 H 0.206 0.794 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.160 0.840 43 H 0.095 0.905 44 H 0.087 0.913 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.404 -20.268 18.975 30.015 hybrid contribution 1.341 1.368 1.633 2.517 sum -10.063 -18.900 20.607 29.718 Atomic orbital electron populations 1.21791 0.93455 1.03061 1.02203 1.20272 0.96746 0.87862 1.04607 1.24851 1.05848 1.03378 0.98250 1.83126 1.58705 1.00265 1.05972 1.24310 1.18906 0.99523 0.99068 1.16970 0.76885 0.86772 0.80407 1.90764 1.54199 1.42413 1.58101 1.48405 1.68664 1.11455 1.05421 1.22671 1.02006 0.90150 0.88372 1.23348 0.99860 0.97158 0.97673 1.21333 0.91586 0.91253 0.89573 0.90512 1.42938 1.22708 1.67320 1.05897 1.19048 1.04272 1.27964 0.84381 0.91366 1.25344 1.01229 1.01563 0.96711 1.69849 1.33850 1.47174 1.12065 0.85686 0.80548 0.77678 0.79504 1.20470 1.22320 1.18010 1.21712 0.97181 0.85685 0.92608 0.90781 1.22008 0.96930 1.01121 1.01502 1.20736 0.96537 0.96630 0.94711 1.18815 1.04603 0.93179 0.98066 1.20561 1.02951 1.01362 0.90156 0.92958 0.90263 0.92480 0.89660 0.88521 0.88834 0.88469 0.91412 0.88650 0.79417 0.93361 0.92697 0.91817 0.91855 0.83951 0.90521 0.91276 0.89978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.90 71.98 0.71 -0.53 16 2 C -0.06 -0.53 5.72 29.85 0.17 -0.36 16 3 C -0.20 -3.16 5.53 24.68 0.14 -3.03 16 4 S 0.25 4.41 18.62 -56.49 -1.05 3.36 16 5 C -0.30 -7.59 6.34 24.08 0.15 -7.43 16 6 C 0.60 19.14 7.62 86.42 0.66 19.80 16 7 O -0.57 -22.13 15.56 -4.35 -0.07 -22.20 16 8 N -0.61 -18.09 3.08 -792.80 -2.44 -20.53 16 9 C 0.09 2.16 5.28 86.85 0.46 2.62 16 10 C -0.14 -4.06 6.77 31.99 0.22 -3.85 16 11 C 0.17 6.13 3.48 46.18 0.16 6.29 16 12 H 0.08 2.75 8.09 -2.39 -0.02 2.73 16 13 N -0.74 -33.20 4.74 -317.32 -1.51 -34.70 16 14 C -0.23 -12.25 10.44 84.03 0.88 -11.37 16 15 H 0.07 3.98 8.06 -2.91 -0.02 3.95 16 16 C -0.06 -3.26 5.50 84.86 0.47 -2.79 16 17 N -0.98 -61.40 13.97 21.65 0.30 -61.10 16 18 Si 0.94 45.03 27.74 68.60 1.90 46.94 16 19 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 20 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 21 H -0.26 -11.25 6.48 99.48 0.65 -10.61 16 22 C 0.13 4.45 3.51 45.34 0.16 4.61 16 23 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 24 C -0.16 -5.59 7.91 71.98 0.57 -5.02 16 25 C -0.05 -1.19 9.80 21.72 0.21 -0.97 16 26 C -0.14 -2.36 5.78 -21.05 -0.12 -2.48 16 27 C -0.09 -1.06 9.55 71.24 0.68 -0.38 16 28 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.06 0.52 7.80 -2.38 -0.02 0.50 16 31 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.10 0.70 7.25 -2.38 -0.02 0.68 16 33 H 0.09 1.90 5.75 -10.74 -0.06 1.84 16 34 H 0.10 1.90 7.95 -2.39 -0.02 1.88 16 35 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 37 H 0.37 16.29 2.92 -92.71 -0.27 16.02 16 38 H 0.26 15.49 8.31 -92.70 -0.77 14.72 16 39 H 0.05 1.92 8.01 -2.39 -0.02 1.90 16 40 H 0.06 2.37 6.78 -2.39 -0.02 2.35 16 41 H 0.06 2.31 6.58 -2.39 -0.02 2.29 16 42 H 0.14 3.36 8.06 -2.91 -0.02 3.33 16 43 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.07 0.78 8.13 -2.39 -0.02 0.76 16 45 H 0.08 0.69 6.86 -2.39 -0.02 0.68 16 Total: -1.00 -70.03 365.09 3.26 -66.77 By element: Atomic # 1 Polarization: 25.75 SS G_CDS: 0.61 Total: 26.36 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: 5.51 Total: -4.90 kcal Atomic # 7 Polarization: -112.68 SS G_CDS: -3.65 Total: -116.33 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -0.07 Total: -22.20 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 1.90 Total: 46.94 kcal Atomic # 16 Polarization: 4.41 SS G_CDS: -1.05 Total: 3.36 kcal Total: -70.03 3.26 -66.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987493734.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.284 kcal (2) G-P(sol) polarization free energy of solvation -70.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds