Wall clock time and date at job start Tue Mar 31 2020 13:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50708 * 109.47185 * 2 1 4 4 S 1.70614 * 124.52289 * 269.97639 * 3 2 1 5 5 C 1.75831 * 91.56439 * 180.02562 * 4 3 2 6 6 C 1.46579 * 125.45783 * 179.97438 * 5 4 3 7 7 O 1.21704 * 120.00010 * 186.77953 * 6 5 4 8 8 N 1.34775 * 119.99876 * 7.05839 * 6 5 4 9 9 C 1.47424 * 125.65030 * 4.22711 * 8 6 5 10 10 C 1.55128 * 104.72083 * 155.81989 * 9 8 6 11 11 C 1.55156 * 101.48683 * 37.29517 * 10 9 8 12 12 H 1.09004 * 110.72088 * 82.69785 * 11 10 9 13 13 N 1.46506 * 110.71808 * 205.96988 * 11 10 9 14 14 C 1.36943 * 119.99576 * 268.51926 * 13 11 10 15 15 H 1.07997 * 120.00567 * 0.02562 * 14 13 11 16 16 C 1.38816 * 119.99427 * 180.02562 * 14 13 11 17 17 N 1.31616 * 120.00290 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99627 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47355 * 59.99882 * 18 16 14 20 20 H 1.48505 * 109.46914 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.47156 * 299.99732 * 18 16 14 22 22 C 1.47029 * 125.64543 * 184.53681 * 8 6 5 23 23 H 1.09002 * 109.88288 * 61.45034 * 22 8 6 24 24 C 1.52995 * 109.88440 * 300.43779 * 22 8 6 25 25 C 1.36653 * 109.08016 * 0.23946 * 5 4 3 26 26 C 1.33820 * 124.52209 * 89.99300 * 3 2 1 27 27 C 1.50700 * 122.44724 * 359.97438 * 26 3 2 28 28 H 1.08999 * 109.46654 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46869 * 300.00108 * 1 2 3 30 30 H 1.08997 * 109.47259 * 59.99882 * 1 2 3 31 31 H 1.09002 * 109.47485 * 240.00258 * 2 1 3 32 32 H 1.09003 * 109.47188 * 119.99654 * 2 1 3 33 33 H 1.09001 * 110.36378 * 274.74428 * 9 8 6 34 34 H 1.08993 * 110.36416 * 37.06974 * 9 8 6 35 35 H 1.09002 * 111.19688 * 279.18850 * 10 9 8 36 36 H 1.08999 * 110.93709 * 155.28969 * 10 9 8 37 37 H 0.97000 * 120.00214 * 88.52509 * 13 11 10 38 38 H 0.96997 * 119.99947 * 180.02562 * 17 16 14 39 39 H 1.09006 * 109.47305 * 61.45110 * 24 22 8 40 40 H 1.08998 * 109.47832 * 181.45420 * 24 22 8 41 41 H 1.09008 * 109.47369 * 301.45930 * 24 22 8 42 42 H 1.07997 * 123.34578 * 179.75495 * 25 5 4 43 43 H 1.09004 * 109.47147 * 89.99822 * 27 26 3 44 44 H 1.09001 * 109.46807 * 209.99084 * 27 26 3 45 45 H 1.08997 * 109.47649 * 329.99505 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 16 2.3552 2.3323 -1.4057 5 6 2.8474 3.7231 -0.4491 6 6 3.3028 5.0078 -0.9883 7 8 3.7372 5.8627 -0.2389 8 7 3.2352 5.2445 -2.3134 9 6 2.6477 4.3404 -3.3188 10 6 2.2508 5.2669 -4.4980 11 6 3.4209 6.2858 -4.4977 12 1 4.2807 5.8859 -5.0353 13 7 2.9957 7.5636 -5.0746 14 6 3.1530 7.7958 -6.4150 15 1 3.5902 7.0369 -7.0469 16 6 2.7505 9.0067 -6.9615 17 7 2.2173 9.9314 -6.1915 18 14 2.9645 9.3232 -8.7900 19 1 2.1997 8.3100 -9.5606 20 1 2.4593 10.6802 -9.1199 21 1 4.4038 9.2310 -9.1432 22 6 3.7410 6.4442 -2.9964 23 1 4.8182 6.5269 -2.8514 24 6 3.0447 7.6897 -2.4445 25 6 2.7429 3.4124 0.8775 26 6 2.2850 2.1359 1.1026 27 6 2.0878 1.5803 2.4894 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.3833 3.6041 -3.6428 34 1 1.7660 3.8441 -2.9135 35 1 1.2999 5.7639 -4.3060 36 1 2.2166 4.7115 -5.4353 37 1 2.6028 8.2452 -4.5071 38 1 1.9358 10.7774 -6.5735 39 1 3.2644 7.7878 -1.3813 40 1 3.4055 8.5721 -2.9730 41 1 1.9678 7.5966 -2.5857 42 1 2.9922 4.1022 1.6702 43 1 3.0090 1.1034 2.8242 44 1 1.8292 2.3901 3.1718 45 1 1.2827 0.8458 2.4756 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987493735.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:30 Heat of formation + Delta-G solvation = 5.739922 kcal Electronic energy + Delta-G solvation = -25054.012144 eV Core-core repulsion = 21584.212234 eV Total energy + Delta-G solvation = -3469.799910 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.06874 -38.84674 -37.31327 -34.26238 -33.97895 -31.81984 -30.78470 -30.45850 -28.94871 -27.56964 -25.28164 -24.99678 -23.38005 -22.78397 -22.19949 -20.18539 -18.94465 -18.31992 -17.93350 -17.40227 -16.15139 -15.81553 -15.68859 -14.78424 -14.65564 -14.52688 -14.20313 -14.06714 -13.66751 -13.46316 -13.26928 -12.97410 -12.86925 -12.54396 -12.42980 -12.35571 -12.12109 -12.02128 -11.75291 -11.65732 -11.58182 -11.38720 -11.23683 -10.98557 -10.89019 -10.59161 -10.47688 -10.25946 -10.03853 -9.80234 -9.59075 -8.97615 -8.81821 -8.47416 -8.36293 -7.05205 -5.83190 -3.13405 0.44933 1.39357 1.83215 2.25377 3.07761 3.30572 3.40667 3.45518 3.46482 4.41153 4.53448 4.55239 4.68754 4.92411 4.94043 4.97419 5.08724 5.18436 5.23762 5.31368 5.38763 5.46326 5.49729 5.50270 5.52813 5.61041 5.61762 5.67585 5.76606 5.82752 5.86917 6.02611 6.07246 6.18448 6.21294 6.29842 6.33185 6.51613 6.56216 6.70509 6.83034 6.97666 7.64021 7.68415 8.27689 8.35142 9.46692 10.01128 10.36334 11.39065 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.025655 B = 0.002853 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.158157 B = 9813.472605 C =10557.255247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.053 4.053 3 C -0.219 4.219 4 S 0.218 5.782 5 C -0.256 4.256 6 C 0.600 3.400 7 O -0.532 6.532 8 N -0.605 5.605 9 C 0.085 3.915 10 C -0.148 4.148 11 C 0.174 3.826 12 H 0.068 0.932 13 N -0.715 5.715 14 C -0.247 4.247 15 H 0.071 0.929 16 C -0.009 4.009 17 N -0.931 5.931 18 Si 0.909 3.091 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.285 1.285 22 C 0.129 3.871 23 H 0.074 0.926 24 C -0.159 4.159 25 C -0.054 4.054 26 C -0.122 4.122 27 C -0.093 4.093 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.392 0.608 38 H 0.257 0.743 39 H 0.062 0.938 40 H 0.080 0.920 41 H 0.055 0.945 42 H 0.150 0.850 43 H 0.067 0.933 44 H 0.066 0.934 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.927 -21.264 13.542 25.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.092 4.092 3 C -0.338 4.338 4 S 0.488 5.512 5 C -0.377 4.377 6 C 0.389 3.611 7 O -0.412 6.412 8 N -0.338 5.338 9 C -0.039 4.039 10 C -0.190 4.190 11 C 0.062 3.938 12 H 0.086 0.914 13 N -0.358 5.358 14 C -0.378 4.378 15 H 0.089 0.911 16 C -0.206 4.206 17 N -0.578 5.578 18 Si 0.740 3.260 19 H -0.212 1.212 20 H -0.217 1.217 21 H -0.212 1.212 22 C 0.026 3.974 23 H 0.092 0.908 24 C -0.217 4.217 25 C -0.088 4.088 26 C -0.135 4.135 27 C -0.152 4.152 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.229 0.771 38 H 0.067 0.933 39 H 0.081 0.919 40 H 0.099 0.901 41 H 0.074 0.926 42 H 0.168 0.832 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.756 -21.057 12.239 24.418 hybrid contribution -0.025 0.613 0.699 0.930 sum -1.780 -20.444 12.938 24.259 Atomic orbital electron populations 1.21790 0.94211 1.01980 1.02653 1.20095 0.96247 0.89671 1.03187 1.24432 1.08135 1.02152 0.99034 1.83403 1.59947 1.01611 1.06196 1.24539 1.15879 0.99324 0.97925 1.16558 0.78640 0.85148 0.80792 1.90803 1.47488 1.45621 1.57251 1.48435 1.58872 1.21254 1.05246 1.22599 0.97587 0.93446 0.90298 1.23595 1.02024 0.97723 0.95643 1.21181 0.94739 0.88388 0.89482 0.91443 1.42651 1.73155 1.12985 1.07014 1.19206 1.34734 0.99262 0.84592 0.91056 1.24762 1.01307 0.96514 0.98014 1.69648 1.46849 1.06828 1.34469 0.86246 0.77742 0.77058 0.84970 1.21217 1.21684 1.21187 1.21934 0.97868 0.84254 0.93379 0.90846 1.22023 1.00664 0.97652 1.01400 1.20556 0.97220 0.95816 0.95186 1.18604 1.04471 0.93998 0.96389 1.20500 1.01885 1.00929 0.91860 0.92010 0.92245 0.92302 0.90805 0.90093 0.91032 0.90898 0.90457 0.90273 0.77050 0.93280 0.91906 0.90095 0.92589 0.83249 0.91413 0.91476 0.91577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.89 37.16 0.37 -0.59 16 2 C -0.05 -0.37 5.72 -27.88 -0.16 -0.53 16 3 C -0.22 -2.12 5.53 -35.86 -0.20 -2.32 16 4 S 0.22 2.34 18.62 -107.50 -2.00 0.34 16 5 C -0.26 -3.58 6.34 -36.79 -0.23 -3.81 16 6 C 0.60 10.21 7.62 -12.90 -0.10 10.11 16 7 O -0.53 -10.61 15.59 5.19 0.08 -10.53 16 8 N -0.60 -9.86 3.08 -164.44 -0.51 -10.37 16 9 C 0.09 1.17 5.31 -2.41 -0.01 1.16 16 10 C -0.15 -2.41 6.78 -24.46 -0.17 -2.58 16 11 C 0.17 3.33 3.48 -66.10 -0.23 3.10 16 12 H 0.07 1.27 8.09 -51.93 -0.42 0.85 16 13 N -0.72 -17.15 4.94 -51.65 -0.26 -17.41 16 14 C -0.25 -6.56 9.96 -15.06 -0.15 -6.71 16 15 H 0.07 1.82 7.83 -52.49 -0.41 1.40 16 16 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 17 N -0.93 -27.42 13.06 55.49 0.72 -26.69 16 18 Si 0.91 21.79 29.55 -169.99 -5.02 16.77 16 19 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 C 0.13 2.34 3.51 -66.95 -0.23 2.10 16 23 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 24 C -0.16 -3.08 7.92 37.16 0.29 -2.78 16 25 C -0.05 -0.69 9.80 -40.44 -0.40 -1.08 16 26 C -0.12 -1.27 5.78 -106.45 -0.62 -1.88 16 27 C -0.09 -0.70 9.55 36.01 0.34 -0.36 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.40 7.80 -51.93 -0.41 -0.01 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.49 7.25 -51.93 -0.38 0.11 16 33 H 0.07 0.86 7.98 -51.93 -0.41 0.44 16 34 H 0.07 0.91 5.68 -37.69 -0.21 0.69 16 35 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 36 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.39 9.98 5.06 -40.82 -0.21 9.77 16 38 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 39 H 0.06 1.22 6.60 -51.93 -0.34 0.88 16 40 H 0.08 1.68 6.82 -51.93 -0.35 1.33 16 41 H 0.06 1.10 8.01 -51.92 -0.42 0.69 16 42 H 0.15 1.84 8.06 -52.49 -0.42 1.42 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.48 8.13 -51.93 -0.42 0.05 16 45 H 0.07 0.42 6.86 -51.93 -0.36 0.06 16 LS Contribution 368.32 15.07 5.55 5.55 Total: -1.00 -30.99 368.32 -9.87 -40.86 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -6.86 Total: 8.01 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: -1.58 Total: -6.53 kcal Atomic # 7 Polarization: -54.44 SS G_CDS: -0.04 Total: -54.47 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.08 Total: -10.53 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: 2.34 SS G_CDS: -2.00 Total: 0.34 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.99 -9.87 -40.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987493735.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.603 kcal (2) G-P(sol) polarization free energy of solvation -30.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds