Wall clock time and date at job start Tue Mar 31 2020 13:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50708 * 109.47185 * 2 1 4 4 S 1.70614 * 124.52289 * 269.97639 * 3 2 1 5 5 C 1.75831 * 91.56439 * 180.02562 * 4 3 2 6 6 C 1.46579 * 125.45783 * 179.97438 * 5 4 3 7 7 O 1.21704 * 120.00010 * 186.77953 * 6 5 4 8 8 N 1.34775 * 119.99876 * 7.05839 * 6 5 4 9 9 C 1.47424 * 125.65030 * 4.22711 * 8 6 5 10 10 C 1.55128 * 104.72083 * 155.81989 * 9 8 6 11 11 C 1.55156 * 101.48683 * 37.29517 * 10 9 8 12 12 H 1.09004 * 110.72088 * 82.69785 * 11 10 9 13 13 N 1.46506 * 110.71808 * 205.96988 * 11 10 9 14 14 C 1.36943 * 119.99576 * 268.51926 * 13 11 10 15 15 H 1.07997 * 120.00567 * 0.02562 * 14 13 11 16 16 C 1.38816 * 119.99427 * 180.02562 * 14 13 11 17 17 N 1.31616 * 120.00290 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99627 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47355 * 59.99882 * 18 16 14 20 20 H 1.48505 * 109.46914 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.47156 * 299.99732 * 18 16 14 22 22 C 1.47029 * 125.64543 * 184.53681 * 8 6 5 23 23 H 1.09002 * 109.88288 * 61.45034 * 22 8 6 24 24 C 1.52995 * 109.88440 * 300.43779 * 22 8 6 25 25 C 1.36653 * 109.08016 * 0.23946 * 5 4 3 26 26 C 1.33820 * 124.52209 * 89.99300 * 3 2 1 27 27 C 1.50700 * 122.44724 * 359.97438 * 26 3 2 28 28 H 1.08999 * 109.46654 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46869 * 300.00108 * 1 2 3 30 30 H 1.08997 * 109.47259 * 59.99882 * 1 2 3 31 31 H 1.09002 * 109.47485 * 240.00258 * 2 1 3 32 32 H 1.09003 * 109.47188 * 119.99654 * 2 1 3 33 33 H 1.09001 * 110.36378 * 274.74428 * 9 8 6 34 34 H 1.08993 * 110.36416 * 37.06974 * 9 8 6 35 35 H 1.09002 * 111.19688 * 279.18850 * 10 9 8 36 36 H 1.08999 * 110.93709 * 155.28969 * 10 9 8 37 37 H 0.97000 * 120.00214 * 88.52509 * 13 11 10 38 38 H 0.96997 * 119.99947 * 180.02562 * 17 16 14 39 39 H 1.09006 * 109.47305 * 61.45110 * 24 22 8 40 40 H 1.08998 * 109.47832 * 181.45420 * 24 22 8 41 41 H 1.09008 * 109.47369 * 301.45930 * 24 22 8 42 42 H 1.07997 * 123.34578 * 179.75495 * 25 5 4 43 43 H 1.09004 * 109.47147 * 89.99822 * 27 26 3 44 44 H 1.09001 * 109.46807 * 209.99084 * 27 26 3 45 45 H 1.08997 * 109.47649 * 329.99505 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 16 2.3552 2.3323 -1.4057 5 6 2.8474 3.7231 -0.4491 6 6 3.3028 5.0078 -0.9883 7 8 3.7372 5.8627 -0.2389 8 7 3.2352 5.2445 -2.3134 9 6 2.6477 4.3404 -3.3188 10 6 2.2508 5.2669 -4.4980 11 6 3.4209 6.2858 -4.4977 12 1 4.2807 5.8859 -5.0353 13 7 2.9957 7.5636 -5.0746 14 6 3.1530 7.7958 -6.4150 15 1 3.5902 7.0369 -7.0469 16 6 2.7505 9.0067 -6.9615 17 7 2.2173 9.9314 -6.1915 18 14 2.9645 9.3232 -8.7900 19 1 2.1997 8.3100 -9.5606 20 1 2.4593 10.6802 -9.1199 21 1 4.4038 9.2310 -9.1432 22 6 3.7410 6.4442 -2.9964 23 1 4.8182 6.5269 -2.8514 24 6 3.0447 7.6897 -2.4445 25 6 2.7429 3.4124 0.8775 26 6 2.2850 2.1359 1.1026 27 6 2.0878 1.5803 2.4894 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.3833 3.6041 -3.6428 34 1 1.7660 3.8441 -2.9135 35 1 1.2999 5.7639 -4.3060 36 1 2.2166 4.7115 -5.4353 37 1 2.6028 8.2452 -4.5071 38 1 1.9358 10.7774 -6.5735 39 1 3.2644 7.7878 -1.3813 40 1 3.4055 8.5721 -2.9730 41 1 1.9678 7.5966 -2.5857 42 1 2.9922 4.1022 1.6702 43 1 3.0090 1.1034 2.8242 44 1 1.8292 2.3901 3.1718 45 1 1.2827 0.8458 2.4756 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987493735.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:29 Heat of formation + Delta-G solvation = -11.697883 kcal Electronic energy + Delta-G solvation = -25054.768304 eV Core-core repulsion = 21584.212234 eV Total energy + Delta-G solvation = -3470.556070 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.40487 -39.78025 -38.66500 -35.98541 -34.73347 -33.52592 -32.22013 -31.45911 -30.46011 -28.31487 -26.87173 -26.17669 -25.07126 -23.79166 -23.14820 -21.38378 -20.34280 -19.49524 -19.22068 -18.92375 -17.21308 -17.11310 -16.96077 -16.45180 -15.89650 -15.50281 -15.47084 -15.10934 -15.00248 -14.68763 -14.41881 -14.14234 -13.90397 -13.68585 -13.51242 -13.37526 -13.17220 -13.07097 -13.02046 -12.90612 -12.87698 -12.69334 -12.55020 -12.18553 -12.11843 -12.09619 -11.98569 -11.71791 -11.60872 -11.36733 -11.06372 -10.89924 -9.95832 -9.50023 -9.29157 -9.01947 -7.92719 -5.22373 -0.50209 0.48874 0.96398 1.32689 1.50513 1.53195 1.59008 1.79303 2.10913 2.58633 3.32358 3.44944 3.64593 3.75657 3.85560 3.91286 4.10209 4.12743 4.21666 4.27132 4.32398 4.42672 4.46657 4.48803 4.52541 4.59005 4.64050 4.78464 4.83762 4.86734 4.90942 4.99786 5.02699 5.07452 5.13852 5.15975 5.20605 5.26886 5.33579 5.43702 5.45709 5.55279 5.57325 6.28057 6.39611 6.97191 7.35706 8.07987 8.32230 9.30699 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.025655 B = 0.002853 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.158157 B = 9813.472605 C =10557.255247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.055 4.055 3 C -0.204 4.204 4 S 0.250 5.750 5 C -0.299 4.299 6 C 0.597 3.403 7 O -0.575 6.575 8 N -0.606 5.606 9 C 0.092 3.908 10 C -0.139 4.139 11 C 0.168 3.832 12 H 0.076 0.924 13 N -0.730 5.730 14 C -0.240 4.240 15 H 0.084 0.916 16 C -0.075 4.075 17 N -0.971 5.971 18 Si 0.974 3.026 19 H -0.275 1.275 20 H -0.301 1.301 21 H -0.278 1.278 22 C 0.134 3.866 23 H 0.070 0.930 24 C -0.144 4.144 25 C -0.052 4.052 26 C -0.135 4.135 27 C -0.091 4.091 28 H 0.079 0.921 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.058 0.942 36 H 0.097 0.903 37 H 0.380 0.620 38 H 0.250 0.750 39 H 0.056 0.944 40 H 0.060 0.940 41 H 0.046 0.954 42 H 0.142 0.858 43 H 0.077 0.923 44 H 0.067 0.933 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.246 -25.191 13.319 28.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.094 4.094 3 C -0.323 4.323 4 S 0.521 5.479 5 C -0.418 4.418 6 C 0.387 3.613 7 O -0.457 6.457 8 N -0.338 5.338 9 C -0.032 4.032 10 C -0.179 4.179 11 C 0.058 3.942 12 H 0.094 0.906 13 N -0.372 5.372 14 C -0.372 4.372 15 H 0.102 0.898 16 C -0.267 4.267 17 N -0.622 5.622 18 Si 0.803 3.197 19 H -0.201 1.201 20 H -0.228 1.228 21 H -0.204 1.204 22 C 0.030 3.970 23 H 0.088 0.912 24 C -0.203 4.203 25 C -0.087 4.087 26 C -0.147 4.147 27 C -0.150 4.150 28 H 0.098 0.902 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.104 0.896 32 H 0.116 0.884 33 H 0.118 0.882 34 H 0.109 0.891 35 H 0.077 0.923 36 H 0.116 0.884 37 H 0.216 0.784 38 H 0.059 0.941 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.065 0.935 42 H 0.159 0.841 43 H 0.096 0.904 44 H 0.086 0.914 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.066 -25.064 12.003 27.867 hybrid contribution 0.073 1.686 0.879 1.902 sum -1.993 -23.379 12.882 26.767 Atomic orbital electron populations 1.21797 0.93553 1.03072 1.02169 1.20272 0.96657 0.87779 1.04671 1.24867 1.06041 1.03211 0.98217 1.83076 1.59098 0.99751 1.05981 1.24312 1.18926 0.99468 0.99130 1.17017 0.77860 0.85943 0.80469 1.90765 1.49469 1.47361 1.58147 1.48427 1.58883 1.20902 1.05638 1.22722 0.99003 0.92892 0.88537 1.23401 0.99586 0.97235 0.97726 1.21376 0.96073 0.87152 0.89590 0.90572 1.42820 1.73436 1.14598 1.06373 1.19646 1.32692 0.99094 0.85767 0.89829 1.25568 1.02311 0.96755 1.02091 1.69820 1.49080 1.07147 1.36107 0.85205 0.77848 0.76363 0.80273 1.20112 1.22766 1.20437 1.21708 0.97540 0.84660 0.93103 0.91232 1.21834 0.99999 0.97764 1.00678 1.20737 0.96518 0.96769 0.94680 1.18811 1.04596 0.93129 0.98125 1.20560 1.02999 1.01334 0.90104 0.90194 0.92544 0.93031 0.89563 0.88420 0.88231 0.89100 0.92305 0.88405 0.78375 0.94102 0.92516 0.92102 0.93516 0.84055 0.90404 0.91375 0.89946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.89 71.98 0.71 -0.66 16 2 C -0.05 -0.55 5.72 29.85 0.17 -0.38 16 3 C -0.20 -3.34 5.53 24.68 0.14 -3.21 16 4 S 0.25 4.72 18.62 -56.49 -1.05 3.66 16 5 C -0.30 -8.12 6.34 24.08 0.15 -7.96 16 6 C 0.60 20.51 7.62 86.42 0.66 21.16 16 7 O -0.58 -23.83 15.59 -4.36 -0.07 -23.89 16 8 N -0.61 -19.57 3.08 -792.40 -2.44 -22.01 16 9 C 0.09 2.33 5.31 86.93 0.46 2.79 16 10 C -0.14 -4.30 6.78 32.06 0.22 -4.08 16 11 C 0.17 6.36 3.48 46.18 0.16 6.52 16 12 H 0.08 2.76 8.09 -2.38 -0.02 2.74 16 13 N -0.73 -35.53 4.94 -317.31 -1.57 -37.10 16 14 C -0.24 -12.75 9.96 84.03 0.84 -11.91 16 15 H 0.08 4.14 7.83 -2.91 -0.02 4.11 16 16 C -0.08 -4.20 5.50 84.86 0.47 -3.74 16 17 N -0.97 -58.88 13.06 21.65 0.28 -58.60 16 18 Si 0.97 45.07 29.55 68.60 2.03 47.10 16 19 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 20 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 21 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 22 C 0.13 4.94 3.51 45.34 0.16 5.10 16 23 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 24 C -0.14 -5.88 7.92 71.98 0.57 -5.31 16 25 C -0.05 -1.29 9.80 21.72 0.21 -1.08 16 26 C -0.14 -2.51 5.78 -21.05 -0.12 -2.63 16 27 C -0.09 -1.14 9.55 71.24 0.68 -0.46 16 28 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.06 0.57 7.80 -2.39 -0.02 0.55 16 30 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.10 0.74 7.25 -2.39 -0.02 0.72 16 33 H 0.10 2.04 7.98 -2.39 -0.02 2.02 16 34 H 0.09 2.02 5.68 -11.45 -0.06 1.96 16 35 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 37 H 0.38 20.12 5.06 -92.71 -0.47 19.65 16 38 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 39 H 0.06 2.34 6.60 -2.38 -0.02 2.33 16 40 H 0.06 2.69 6.82 -2.39 -0.02 2.68 16 41 H 0.05 1.93 8.01 -2.38 -0.02 1.92 16 42 H 0.14 3.58 8.06 -2.91 -0.02 3.55 16 43 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 44 H 0.07 0.84 8.13 -2.39 -0.02 0.82 16 45 H 0.08 0.76 6.86 -2.39 -0.02 0.74 16 Total: -1.00 -68.85 368.32 3.13 -65.72 By element: Atomic # 1 Polarization: 30.48 SS G_CDS: 0.47 Total: 30.95 kcal Atomic # 6 Polarization: -11.31 SS G_CDS: 5.47 Total: -5.84 kcal Atomic # 7 Polarization: -113.98 SS G_CDS: -3.72 Total: -117.70 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -0.07 Total: -23.89 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Atomic # 16 Polarization: 4.72 SS G_CDS: -1.05 Total: 3.66 kcal Total: -68.85 3.13 -65.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987493735.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.024 kcal (2) G-P(sol) polarization free energy of solvation -68.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds