Wall clock time and date at job start Tue Mar 31 2020 13:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46928 * 2 1 4 4 C 1.50699 * 109.46800 * 179.97438 * 3 2 1 5 5 C 1.33813 * 124.52468 * 89.99934 * 4 3 2 6 6 C 1.37470 * 115.10329 * 179.72328 * 5 4 3 7 7 C 1.36652 * 113.29683 * 0.45439 * 6 5 4 8 8 C 1.46582 * 125.46032 * 179.83547 * 7 6 5 9 9 O 1.21708 * 119.99406 * 359.72132 * 8 7 6 10 10 N 1.34766 * 120.00293 * 179.71826 * 8 7 6 11 11 C 1.47027 * 125.64649 * 0.05357 * 10 8 7 12 12 C 1.54326 * 107.27169 * 181.01270 * 11 10 8 13 13 H 1.09003 * 110.87186 * 263.75976 * 12 11 10 14 14 N 1.46499 * 110.71816 * 140.55580 * 12 11 10 15 15 C 1.36939 * 119.99547 * 91.48120 * 14 12 11 16 16 H 1.07993 * 120.00716 * 359.97438 * 15 14 12 17 17 C 1.38817 * 119.99459 * 179.97438 * 15 14 12 18 18 N 1.31619 * 120.00154 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99635 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47297 * 269.99668 * 19 17 15 21 21 H 1.48503 * 109.47261 * 149.99848 * 19 17 15 22 22 H 1.48500 * 109.47454 * 29.99841 * 19 17 15 23 23 C 1.55159 * 102.93996 * 22.19573 * 12 11 10 24 24 C 1.47420 * 125.65194 * 179.97438 * 10 8 7 25 25 H 1.08997 * 110.46184 * 274.80279 * 24 10 8 26 26 C 1.53001 * 110.36477 * 37.08038 * 24 10 8 27 27 S 1.70620 * 124.52454 * 269.97017 * 4 3 2 28 28 H 1.08994 * 109.47437 * 300.00299 * 1 2 3 29 29 H 1.09003 * 109.46786 * 60.00481 * 1 2 3 30 30 H 1.09004 * 109.47349 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47437 * 239.99701 * 2 1 3 32 32 H 1.09003 * 109.46786 * 119.99519 * 2 1 3 33 33 H 1.08994 * 109.47306 * 59.99621 * 3 2 1 34 34 H 1.09003 * 109.46994 * 299.99392 * 3 2 1 35 35 H 1.08008 * 122.45083 * 359.97438 * 5 4 3 36 36 H 1.08002 * 123.35289 * 180.26998 * 6 5 4 37 37 H 1.09004 * 109.88328 * 61.59758 * 11 10 8 38 38 H 1.08994 * 109.88338 * 300.43178 * 11 10 8 39 39 H 0.96998 * 120.00185 * 271.47503 * 14 12 11 40 40 H 0.96993 * 120.00007 * 0.02562 * 18 17 15 41 41 H 1.08995 * 111.00486 * 82.57180 * 23 12 11 42 42 H 1.08998 * 111.00188 * 206.38758 * 23 12 11 43 43 H 1.08998 * 109.47420 * 175.40866 * 26 24 10 44 44 H 1.08991 * 109.47233 * 295.40793 * 26 24 10 45 45 H 1.09004 * 109.46877 * 55.41112 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4425 0.0006 5 6 4.3058 1.4423 -1.1015 6 6 5.6619 1.4483 -0.8759 7 6 5.9890 1.4435 0.4509 8 6 7.3518 1.4446 0.9906 9 8 8.3057 1.4450 0.2347 10 7 7.5486 1.4452 2.3239 11 6 6.4917 1.4437 3.3460 12 6 7.1866 1.4711 4.7237 13 1 7.2767 0.4650 5.1333 14 7 6.4632 2.3438 5.6517 15 6 5.4858 1.8249 6.4585 16 1 5.2480 0.7726 6.4103 17 6 4.8007 2.6517 7.3382 18 7 5.0909 3.9342 7.3974 19 14 3.4670 1.9441 8.4382 20 1 2.1584 2.0184 7.7400 21 1 3.3999 2.7247 9.6997 22 1 3.7823 0.5267 8.7494 23 6 8.5852 2.0576 4.3958 24 6 8.8591 1.4457 2.9990 25 1 9.2372 0.4282 3.0979 26 6 9.8563 2.3105 2.2253 27 16 4.5134 1.4434 1.4068 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.6766 1.9564 0.8899 34 1 1.6767 1.9563 -0.8901 35 1 3.8838 1.4417 -2.0957 36 1 6.3956 1.4532 -1.6684 37 1 5.8877 0.5410 3.2534 38 1 5.8629 2.3264 3.2303 39 1 6.6766 3.2890 5.6949 40 1 5.7831 4.3016 6.8260 41 1 8.5505 3.1459 4.3460 42 1 9.3280 1.7252 5.1209 43 1 10.7939 2.3670 2.7782 44 1 10.0382 1.8675 1.2462 45 1 9.4473 3.3131 2.1002 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988893468.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:59 Heat of formation + Delta-G solvation = -2.811666 kcal Electronic energy + Delta-G solvation = -25097.228581 eV Core-core repulsion = 21627.057847 eV Total energy + Delta-G solvation = -3470.170735 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.06195 -38.30641 -37.17018 -34.98651 -34.51575 -32.09412 -31.48734 -30.11086 -28.27772 -26.89112 -25.52299 -24.06740 -23.57852 -22.29980 -21.60972 -20.70535 -19.99917 -18.32961 -17.67638 -17.37657 -16.35921 -15.91647 -15.52900 -15.05653 -14.76014 -14.62619 -14.17384 -13.90394 -13.71468 -13.56216 -13.47444 -13.05731 -12.91193 -12.70191 -12.44094 -12.32998 -11.99841 -11.92449 -11.84225 -11.56768 -11.37204 -11.33283 -11.03956 -10.94811 -10.81850 -10.63749 -10.40111 -10.37193 -10.08704 -9.61641 -9.29904 -9.06044 -8.74585 -8.54119 -8.28396 -7.23697 -6.22854 -3.26066 0.58514 1.58452 2.03494 2.41926 3.09715 3.35050 3.45283 3.49093 3.63381 4.51241 4.54239 4.63046 4.76794 4.84801 4.97725 5.09877 5.11532 5.15288 5.29064 5.36787 5.37896 5.49665 5.50106 5.55514 5.57600 5.59806 5.72242 5.75896 5.84172 5.88285 5.93107 5.94339 6.01400 6.04688 6.07166 6.18875 6.28744 6.34816 6.37224 6.42136 6.58276 6.71465 7.65467 7.70311 8.28370 8.62433 9.05160 9.92003 10.05051 11.24696 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.008238 B = 0.005115 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3397.971440 B = 5472.889635 C = 8505.418682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.052 4.052 4 C -0.217 4.217 5 C -0.159 4.159 6 C -0.059 4.059 7 C -0.272 4.272 8 C 0.603 3.397 9 O -0.542 6.542 10 N -0.607 5.607 11 C 0.060 3.940 12 C 0.183 3.817 13 H 0.073 0.927 14 N -0.722 5.722 15 C -0.342 4.342 16 H 0.068 0.932 17 C -0.037 4.037 18 N -0.938 5.938 19 Si 1.080 2.920 20 H -0.294 1.294 21 H -0.287 1.287 22 H -0.293 1.293 23 C -0.139 4.139 24 C 0.139 3.861 25 H 0.076 0.924 26 C -0.160 4.160 27 S 0.249 5.751 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.136 0.864 36 H 0.148 0.852 37 H 0.066 0.934 38 H 0.079 0.921 39 H 0.371 0.629 40 H 0.257 0.743 41 H 0.075 0.925 42 H 0.083 0.917 43 H 0.059 0.941 44 H 0.081 0.919 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.051 -6.505 -14.798 16.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.091 4.091 4 C -0.337 4.337 5 C -0.189 4.189 6 C -0.093 4.093 7 C -0.392 4.392 8 C 0.392 3.608 9 O -0.422 6.422 10 N -0.340 5.340 11 C -0.067 4.067 12 C 0.070 3.930 13 H 0.091 0.909 14 N -0.363 5.363 15 C -0.473 4.473 16 H 0.086 0.914 17 C -0.236 4.236 18 N -0.583 5.583 19 Si 0.911 3.089 20 H -0.222 1.222 21 H -0.213 1.213 22 H -0.220 1.220 23 C -0.178 4.178 24 C 0.036 3.964 25 H 0.094 0.906 26 C -0.218 4.218 27 S 0.520 5.480 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.154 0.846 36 H 0.165 0.835 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.205 0.795 40 H 0.068 0.932 41 H 0.094 0.906 42 H 0.101 0.899 43 H 0.078 0.922 44 H 0.100 0.900 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.092 -6.347 -12.466 14.326 hybrid contribution 1.262 -0.079 -2.878 3.143 sum -1.830 -6.426 -15.343 16.735 Atomic orbital electron populations 1.21781 0.95362 1.01872 1.01994 1.21555 0.95915 0.95635 1.02690 1.20228 0.87442 0.97965 1.03444 1.24745 1.01593 1.07378 0.99986 1.19844 0.92520 1.07274 0.99280 1.20620 0.96047 0.97640 0.94950 1.24615 0.97184 1.19248 0.98169 1.16604 0.86852 0.76547 0.80779 1.90734 1.41692 1.52227 1.57571 1.48465 1.09016 1.72064 1.04433 1.23472 0.90763 1.01831 0.90668 1.21060 0.89070 0.95631 0.87204 0.90935 1.42408 1.43028 1.07195 1.43668 1.20084 1.14033 0.95348 1.17809 0.91384 1.25789 1.02634 0.95266 0.99898 1.70859 1.33621 1.12192 1.41585 0.83233 0.75185 0.74200 0.76294 1.22161 1.21296 1.21980 1.23216 0.98730 1.01252 0.94610 1.21870 0.83255 0.99459 0.91785 0.90648 1.22130 0.97956 0.99911 1.01817 1.84140 0.93055 1.66048 1.04785 0.92407 0.92704 0.92517 0.91689 0.91571 0.90484 0.90175 0.84575 0.83464 0.91584 0.90329 0.79539 0.93215 0.90595 0.89857 0.92156 0.89974 0.92752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.91 37.16 0.37 -0.82 16 2 C -0.12 -1.09 5.92 -26.73 -0.16 -1.24 16 3 C -0.05 -0.52 5.65 -27.88 -0.16 -0.67 16 4 C -0.22 -2.66 5.53 -35.86 -0.20 -2.86 16 5 C -0.16 -1.90 9.99 -41.41 -0.41 -2.31 16 6 C -0.06 -0.81 10.01 -40.43 -0.40 -1.21 16 7 C -0.27 -4.23 6.38 -36.79 -0.23 -4.47 16 8 C 0.60 10.46 7.60 -12.90 -0.10 10.36 16 9 O -0.54 -10.27 14.56 5.18 0.08 -10.19 16 10 N -0.61 -10.05 3.24 -164.60 -0.53 -10.58 16 11 C 0.06 1.04 4.92 -3.06 -0.02 1.03 16 12 C 0.18 3.38 3.61 -66.09 -0.24 3.14 16 13 H 0.07 1.34 8.09 -51.93 -0.42 0.92 16 14 N -0.72 -16.64 5.15 -51.65 -0.27 -16.91 16 15 C -0.34 -8.91 9.96 -15.06 -0.15 -9.06 16 16 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 17 C -0.04 -1.02 5.50 -17.43 -0.10 -1.12 16 18 N -0.94 -27.62 13.70 55.49 0.76 -26.86 16 19 Si 1.08 24.63 29.92 -169.99 -5.09 19.54 16 20 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 21 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 23 C -0.14 -2.16 6.13 -24.57 -0.15 -2.31 16 24 C 0.14 2.09 3.77 -66.41 -0.25 1.84 16 25 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 26 C -0.16 -2.29 8.59 37.16 0.32 -1.97 16 27 S 0.25 3.57 18.38 -107.50 -1.98 1.59 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.14 1.30 8.06 -52.48 -0.42 0.88 16 36 H 0.15 1.89 8.06 -52.49 -0.42 1.46 16 37 H 0.07 1.11 6.99 -51.93 -0.36 0.75 16 38 H 0.08 1.48 6.71 -51.93 -0.35 1.13 16 39 H 0.37 8.90 6.59 -40.82 -0.27 8.63 16 40 H 0.26 7.42 6.77 -40.82 -0.28 7.15 16 41 H 0.08 1.23 7.93 -51.93 -0.41 0.82 16 42 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.08 1.29 6.09 -51.93 -0.32 0.97 16 45 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 372.40 15.07 5.61 5.61 Total: -1.00 -30.24 372.40 -10.40 -40.63 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -7.11 Total: 8.83 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: -1.88 Total: -11.67 kcal Atomic # 7 Polarization: -54.31 SS G_CDS: -0.04 Total: -54.35 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.08 Total: -10.19 kcal Atomic # 14 Polarization: 24.63 SS G_CDS: -5.09 Total: 19.54 kcal Atomic # 16 Polarization: 3.57 SS G_CDS: -1.98 Total: 1.59 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.24 -10.40 -40.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988893468.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.822 kcal (2) G-P(sol) polarization free energy of solvation -30.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds