Wall clock time and date at job start Tue Mar 31 2020 13:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46928 * 2 1 4 4 C 1.50699 * 109.46800 * 179.97438 * 3 2 1 5 5 C 1.33813 * 124.52468 * 89.99934 * 4 3 2 6 6 C 1.37470 * 115.10329 * 179.72328 * 5 4 3 7 7 C 1.36652 * 113.29683 * 0.45439 * 6 5 4 8 8 C 1.46582 * 125.46032 * 179.83547 * 7 6 5 9 9 O 1.21708 * 119.99406 * 359.72132 * 8 7 6 10 10 N 1.34766 * 120.00293 * 179.71826 * 8 7 6 11 11 C 1.47027 * 125.64649 * 0.05357 * 10 8 7 12 12 C 1.54326 * 107.27169 * 181.01270 * 11 10 8 13 13 H 1.09003 * 110.87186 * 263.75976 * 12 11 10 14 14 N 1.46499 * 110.71816 * 140.55580 * 12 11 10 15 15 C 1.36939 * 119.99547 * 91.48120 * 14 12 11 16 16 H 1.07993 * 120.00716 * 359.97438 * 15 14 12 17 17 C 1.38817 * 119.99459 * 179.97438 * 15 14 12 18 18 N 1.31619 * 120.00154 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99635 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47297 * 269.99668 * 19 17 15 21 21 H 1.48503 * 109.47261 * 149.99848 * 19 17 15 22 22 H 1.48500 * 109.47454 * 29.99841 * 19 17 15 23 23 C 1.55159 * 102.93996 * 22.19573 * 12 11 10 24 24 C 1.47420 * 125.65194 * 179.97438 * 10 8 7 25 25 H 1.08997 * 110.46184 * 274.80279 * 24 10 8 26 26 C 1.53001 * 110.36477 * 37.08038 * 24 10 8 27 27 S 1.70620 * 124.52454 * 269.97017 * 4 3 2 28 28 H 1.08994 * 109.47437 * 300.00299 * 1 2 3 29 29 H 1.09003 * 109.46786 * 60.00481 * 1 2 3 30 30 H 1.09004 * 109.47349 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47437 * 239.99701 * 2 1 3 32 32 H 1.09003 * 109.46786 * 119.99519 * 2 1 3 33 33 H 1.08994 * 109.47306 * 59.99621 * 3 2 1 34 34 H 1.09003 * 109.46994 * 299.99392 * 3 2 1 35 35 H 1.08008 * 122.45083 * 359.97438 * 5 4 3 36 36 H 1.08002 * 123.35289 * 180.26998 * 6 5 4 37 37 H 1.09004 * 109.88328 * 61.59758 * 11 10 8 38 38 H 1.08994 * 109.88338 * 300.43178 * 11 10 8 39 39 H 0.96998 * 120.00185 * 271.47503 * 14 12 11 40 40 H 0.96993 * 120.00007 * 0.02562 * 18 17 15 41 41 H 1.08995 * 111.00486 * 82.57180 * 23 12 11 42 42 H 1.08998 * 111.00188 * 206.38758 * 23 12 11 43 43 H 1.08998 * 109.47420 * 175.40866 * 26 24 10 44 44 H 1.08991 * 109.47233 * 295.40793 * 26 24 10 45 45 H 1.09004 * 109.46877 * 55.41112 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4425 0.0006 5 6 4.3058 1.4423 -1.1015 6 6 5.6619 1.4483 -0.8759 7 6 5.9890 1.4435 0.4509 8 6 7.3518 1.4446 0.9906 9 8 8.3057 1.4450 0.2347 10 7 7.5486 1.4452 2.3239 11 6 6.4917 1.4437 3.3460 12 6 7.1866 1.4711 4.7237 13 1 7.2767 0.4650 5.1333 14 7 6.4632 2.3438 5.6517 15 6 5.4858 1.8249 6.4585 16 1 5.2480 0.7726 6.4103 17 6 4.8007 2.6517 7.3382 18 7 5.0909 3.9342 7.3974 19 14 3.4670 1.9441 8.4382 20 1 2.1584 2.0184 7.7400 21 1 3.3999 2.7247 9.6997 22 1 3.7823 0.5267 8.7494 23 6 8.5852 2.0576 4.3958 24 6 8.8591 1.4457 2.9990 25 1 9.2372 0.4282 3.0979 26 6 9.8563 2.3105 2.2253 27 16 4.5134 1.4434 1.4068 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.6766 1.9564 0.8899 34 1 1.6767 1.9563 -0.8901 35 1 3.8838 1.4417 -2.0957 36 1 6.3956 1.4532 -1.6684 37 1 5.8877 0.5410 3.2534 38 1 5.8629 2.3264 3.2303 39 1 6.6766 3.2890 5.6949 40 1 5.7831 4.3016 6.8260 41 1 8.5505 3.1459 4.3460 42 1 9.3280 1.7252 5.1209 43 1 10.7939 2.3670 2.7782 44 1 10.0382 1.8675 1.2462 45 1 9.4473 3.3131 2.1002 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988893468.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:58 Heat of formation + Delta-G solvation = -18.858701 kcal Electronic energy + Delta-G solvation = -25097.924433 eV Core-core repulsion = 21627.057847 eV Total energy + Delta-G solvation = -3470.866586 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.39482 -39.44070 -38.46862 -36.31986 -35.80013 -33.43214 -33.14908 -31.05782 -29.93662 -27.89714 -26.81688 -25.72937 -24.84588 -23.53796 -22.37831 -22.18526 -21.21646 -19.49816 -19.42362 -18.74828 -17.70053 -17.01469 -16.94834 -16.37114 -15.95216 -15.87124 -15.64743 -15.34735 -15.02519 -14.66828 -14.56462 -14.39219 -14.08764 -13.78188 -13.57893 -13.40490 -13.29377 -13.21612 -12.81269 -12.71157 -12.65804 -12.50416 -12.36023 -12.18994 -12.08824 -11.86105 -11.81964 -11.73868 -11.45771 -11.23276 -11.02652 -10.83210 -9.98173 -9.61833 -9.49871 -9.18738 -8.36368 -5.33830 -0.52061 0.47717 0.97154 1.34179 1.62181 1.71210 1.80960 1.85351 2.10294 2.72254 3.27480 3.37481 3.65717 3.68169 3.72857 3.81130 4.02760 4.05270 4.13232 4.14832 4.27901 4.34011 4.37646 4.40136 4.58120 4.60355 4.62007 4.69416 4.73361 4.80512 4.93852 4.95800 4.99583 5.01858 5.10595 5.16926 5.19379 5.20895 5.26718 5.41029 5.43606 5.44416 5.63453 6.33159 6.51466 6.95440 7.06624 7.95902 8.07298 9.14778 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.008238 B = 0.005115 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3397.971440 B = 5472.889635 C = 8505.418682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C -0.053 4.053 4 C -0.201 4.201 5 C -0.158 4.158 6 C -0.049 4.049 7 C -0.303 4.303 8 C 0.599 3.401 9 O -0.564 6.564 10 N -0.608 5.608 11 C 0.076 3.924 12 C 0.176 3.824 13 H 0.076 0.924 14 N -0.734 5.734 15 C -0.332 4.332 16 H 0.073 0.927 17 C -0.096 4.096 18 N -0.975 5.975 19 Si 1.123 2.877 20 H -0.285 1.285 21 H -0.297 1.297 22 H -0.271 1.271 23 C -0.126 4.126 24 C 0.137 3.863 25 H 0.091 0.909 26 C -0.151 4.151 27 S 0.214 5.786 28 H 0.053 0.947 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.102 0.898 35 H 0.168 0.832 36 H 0.156 0.844 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.363 0.637 40 H 0.246 0.754 41 H 0.067 0.933 42 H 0.103 0.897 43 H 0.086 0.914 44 H 0.068 0.932 45 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.827 -7.765 -16.087 18.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.092 4.092 4 C -0.321 4.321 5 C -0.188 4.188 6 C -0.083 4.083 7 C -0.423 4.423 8 C 0.389 3.611 9 O -0.447 6.447 10 N -0.341 5.341 11 C -0.051 4.051 12 C 0.065 3.935 13 H 0.094 0.906 14 N -0.374 5.374 15 C -0.463 4.463 16 H 0.091 0.909 17 C -0.288 4.288 18 N -0.622 5.622 19 Si 0.949 3.051 20 H -0.212 1.212 21 H -0.223 1.223 22 H -0.196 1.196 23 C -0.165 4.165 24 C 0.035 3.965 25 H 0.109 0.891 26 C -0.209 4.209 27 S 0.484 5.516 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.071 0.929 33 H 0.091 0.909 34 H 0.120 0.880 35 H 0.186 0.814 36 H 0.173 0.827 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.196 0.804 40 H 0.056 0.944 41 H 0.086 0.914 42 H 0.121 0.879 43 H 0.105 0.895 44 H 0.087 0.913 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -3.837 -7.649 -13.785 16.225 hybrid contribution 1.506 0.272 -2.616 3.031 sum -2.331 -7.377 -16.400 18.133 Atomic orbital electron populations 1.21767 0.94212 1.02425 1.02396 1.21535 0.96880 0.94784 1.02359 1.20364 0.85653 0.98831 1.04322 1.25015 1.02621 1.05724 0.98708 1.20114 0.91595 1.06459 1.00602 1.20908 0.97205 0.95828 0.94398 1.24560 0.96631 1.22075 0.99043 1.16872 0.87445 0.76033 0.80714 1.90713 1.42550 1.53481 1.57909 1.48497 1.09319 1.71961 1.04311 1.23091 0.90620 1.01296 0.90120 1.21250 0.90316 0.95182 0.86762 0.90631 1.42523 1.43133 1.07333 1.44405 1.20397 1.13547 0.95437 1.16906 0.90936 1.27045 1.04851 0.95076 1.01787 1.70964 1.34763 1.13540 1.42943 0.82677 0.73462 0.74595 0.74402 1.21202 1.22340 1.19593 1.23123 0.97278 1.00647 0.95446 1.22028 0.82887 1.00432 0.91185 0.89097 1.22037 0.98805 0.98673 1.01366 1.84201 0.93675 1.67134 1.06591 0.92808 0.91513 0.91938 0.91066 0.92901 0.90881 0.87981 0.81411 0.82690 0.91237 0.92003 0.80442 0.94394 0.91405 0.87899 0.89493 0.91309 0.94082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.91 71.98 0.71 -1.28 16 2 C -0.12 -1.89 5.92 30.59 0.18 -1.71 16 3 C -0.05 -0.93 5.65 29.85 0.17 -0.76 16 4 C -0.20 -4.58 5.53 24.68 0.14 -4.44 16 5 C -0.16 -3.40 9.99 21.08 0.21 -3.19 16 6 C -0.05 -1.28 10.01 21.72 0.22 -1.06 16 7 C -0.30 -9.38 6.38 24.08 0.15 -9.22 16 8 C 0.60 20.81 7.60 86.42 0.66 21.46 16 9 O -0.56 -21.39 14.56 -4.37 -0.06 -21.45 16 10 N -0.61 -20.07 3.24 -792.88 -2.57 -22.64 16 11 C 0.08 2.65 4.92 86.73 0.43 3.08 16 12 C 0.18 6.43 3.61 46.18 0.17 6.60 16 13 H 0.08 2.73 8.09 -2.39 -0.02 2.71 16 14 N -0.73 -34.11 5.15 -317.32 -1.63 -35.74 16 15 C -0.33 -17.26 9.96 84.03 0.84 -16.43 16 16 H 0.07 3.65 7.83 -2.91 -0.02 3.63 16 17 C -0.10 -5.26 5.50 84.86 0.47 -4.79 16 18 N -0.97 -58.51 13.70 21.65 0.30 -58.21 16 19 Si 1.12 49.47 29.92 68.60 2.05 51.52 16 20 H -0.29 -12.02 7.11 99.48 0.71 -11.31 16 21 H -0.30 -13.46 7.11 99.48 0.71 -12.75 16 22 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 23 C -0.13 -3.81 6.13 32.00 0.20 -3.61 16 24 C 0.14 3.96 3.77 45.48 0.17 4.13 16 25 H 0.09 2.38 8.14 -2.39 -0.02 2.37 16 26 C -0.15 -4.16 8.59 71.98 0.62 -3.54 16 27 S 0.21 6.11 18.38 -56.49 -1.04 5.07 16 28 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 31 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.17 2.55 8.06 -2.91 -0.02 2.53 16 36 H 0.16 3.76 8.06 -2.91 -0.02 3.73 16 37 H 0.07 2.36 6.99 -2.38 -0.02 2.34 16 38 H 0.06 2.39 6.71 -2.39 -0.02 2.37 16 39 H 0.36 17.89 6.59 -92.71 -0.61 17.28 16 40 H 0.25 14.68 6.77 -92.71 -0.63 14.05 16 41 H 0.07 2.18 7.93 -2.39 -0.02 2.16 16 42 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 43 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.07 2.11 6.09 -2.39 -0.01 2.10 16 45 H 0.04 1.22 8.14 -2.38 -0.02 1.20 16 Total: -1.00 -65.27 372.40 2.88 -62.39 By element: Atomic # 1 Polarization: 33.32 SS G_CDS: 0.51 Total: 33.83 kcal Atomic # 6 Polarization: -20.09 SS G_CDS: 5.32 Total: -14.77 kcal Atomic # 7 Polarization: -112.69 SS G_CDS: -3.91 Total: -116.59 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: -0.06 Total: -21.45 kcal Atomic # 14 Polarization: 49.47 SS G_CDS: 2.05 Total: 51.52 kcal Atomic # 16 Polarization: 6.11 SS G_CDS: -1.04 Total: 5.07 kcal Total: -65.27 2.88 -62.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988893468.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.534 kcal (2) G-P(sol) polarization free energy of solvation -65.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds