Wall clock time and date at job start Tue Mar 31 2020 13:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50695 * 109.46945 * 2 1 4 4 S 1.70618 * 124.52467 * 270.02415 * 3 2 1 5 5 C 1.75833 * 91.56250 * 179.97438 * 4 3 2 6 6 C 1.46581 * 125.45894 * 179.97438 * 5 4 3 7 7 O 1.21696 * 120.00241 * 174.07847 * 6 5 4 8 8 N 1.34778 * 119.99640 * 354.07377 * 6 5 4 9 9 C 1.47422 * 125.65274 * 354.43369 * 8 6 5 10 10 C 1.54912 * 104.83644 * 204.08333 * 9 8 6 11 11 H 1.08996 * 111.03613 * 81.07701 * 10 9 8 12 12 N 1.46493 * 111.00205 * 204.92020 * 10 9 8 13 13 C 1.36939 * 119.99636 * 267.19229 * 12 10 9 14 14 H 1.07999 * 120.00095 * 0.02562 * 13 12 10 15 15 C 1.38815 * 119.99873 * 180.28058 * 13 12 10 16 16 N 1.31621 * 120.00062 * 359.72083 * 15 13 12 17 17 Si 1.86805 * 119.99989 * 179.72388 * 15 13 12 18 18 H 1.48494 * 109.46806 * 89.99854 * 17 15 13 19 19 H 1.48497 * 109.47070 * 209.99762 * 17 15 13 20 20 H 1.48497 * 109.46863 * 330.00063 * 17 15 13 21 21 C 1.55163 * 101.57870 * 322.99203 * 10 9 8 22 22 C 1.47027 * 125.64746 * 174.38102 * 8 6 5 23 23 H 1.08997 * 109.88265 * 59.56976 * 22 8 6 24 24 C 1.53002 * 110.01053 * 298.47836 * 22 8 6 25 25 C 1.36651 * 109.08481 * 0.24225 * 5 4 3 26 26 C 1.33816 * 124.52095 * 90.00777 * 3 2 1 27 27 C 1.50700 * 122.44932 * 359.97438 * 26 3 2 28 28 H 1.09004 * 109.47059 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46483 * 299.99506 * 1 2 3 30 30 H 1.08998 * 109.47222 * 59.99665 * 1 2 3 31 31 H 1.09005 * 109.46483 * 240.00494 * 2 1 3 32 32 H 1.08998 * 109.47222 * 120.00335 * 2 1 3 33 33 H 1.09001 * 110.36428 * 85.24290 * 9 8 6 34 34 H 1.08998 * 110.36776 * 322.92359 * 9 8 6 35 35 H 0.97004 * 120.00335 * 87.20042 * 12 10 9 36 36 H 0.97002 * 119.99839 * 180.02562 * 16 15 13 37 37 H 1.08992 * 110.71778 * 153.86760 * 21 10 9 38 38 H 1.08998 * 110.71667 * 277.13855 * 21 10 9 39 39 H 1.09000 * 109.46992 * 302.11561 * 24 22 8 40 40 H 1.08995 * 109.46933 * 62.11372 * 24 22 8 41 41 H 1.09001 * 109.47020 * 182.11549 * 24 22 8 42 42 H 1.07997 * 123.34918 * 179.75308 * 25 5 4 43 43 H 1.08999 * 109.47573 * 90.00027 * 27 26 3 44 44 H 1.09000 * 109.47288 * 210.00552 * 27 26 3 45 45 H 1.09001 * 109.47004 * 329.99903 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 16 2.3541 2.3327 -1.4057 5 6 2.8454 3.7237 -0.4490 6 6 3.2997 5.0089 -0.9881 7 8 3.5140 5.9422 -0.2371 8 7 3.4801 5.1568 -2.3155 9 6 3.3710 4.0854 -3.3222 10 6 4.2341 4.5710 -4.5135 11 1 5.2911 4.3707 -4.3381 12 7 3.7879 3.9607 -5.7683 13 6 4.3679 2.8016 -6.2101 14 1 5.1540 2.3372 -5.6333 15 6 3.9492 2.2265 -7.4021 16 7 2.9908 2.7923 -8.1048 17 14 4.7457 0.6495 -8.0088 18 1 4.0024 -0.5187 -7.4721 19 1 4.7131 0.6176 -9.4930 20 1 6.1549 0.5959 -7.5433 21 6 3.9481 6.0960 -4.5041 22 6 3.8172 6.4138 -2.9996 23 1 4.7623 6.8011 -2.6191 24 6 2.7070 7.4435 -2.7800 25 6 2.7417 3.4128 0.8776 26 6 2.2852 2.1357 1.1025 27 6 2.0884 1.5800 2.4894 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 2.3335 3.9599 -3.6318 34 1 3.7649 3.1500 -2.9249 35 1 3.0816 4.3778 -6.2862 36 1 2.6979 2.3901 -8.9376 37 1 4.7793 6.6469 -4.9438 38 1 3.0177 6.3170 -5.0272 39 1 1.7620 7.0426 -3.1463 40 1 2.6205 7.6630 -1.7159 41 1 2.9478 8.3584 -3.3213 42 1 2.9907 4.1027 1.6703 43 1 3.0097 1.1031 2.8240 44 1 1.8297 2.3896 3.1719 45 1 1.2833 0.8453 2.4756 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989766615.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:01 Heat of formation + Delta-G solvation = -4.063977 kcal Electronic energy + Delta-G solvation = -25237.883298 eV Core-core repulsion = 21767.658259 eV Total energy + Delta-G solvation = -3470.225039 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.99264 -38.68810 -37.22513 -34.25792 -33.85757 -31.90232 -31.43900 -30.17006 -28.47109 -27.46432 -25.58729 -24.91641 -23.80144 -22.54331 -21.38774 -20.42977 -19.34925 -18.16011 -17.76137 -17.31824 -16.16774 -15.94884 -15.48118 -14.74572 -14.42716 -14.28312 -14.21088 -13.89680 -13.69009 -13.40943 -13.25894 -12.97276 -12.76380 -12.69730 -12.45096 -12.29363 -12.22214 -12.12055 -11.74143 -11.68126 -11.42213 -11.24677 -11.19977 -11.09248 -10.92859 -10.68262 -10.37114 -10.30176 -10.08040 -9.85143 -9.76689 -9.07601 -8.69890 -8.33058 -8.24044 -7.15755 -5.90433 -3.21704 0.61113 1.61089 2.06019 2.38308 3.14012 3.35740 3.36753 3.42383 3.43388 4.45577 4.59461 4.65808 4.87863 5.01905 5.04954 5.12070 5.18075 5.21517 5.24574 5.36096 5.45763 5.50575 5.51764 5.62285 5.63470 5.67808 5.74393 5.75677 5.77716 5.80464 5.92981 6.01895 6.04121 6.06068 6.12662 6.29595 6.33174 6.40454 6.41761 6.48562 6.63324 6.76247 7.58893 7.72213 8.26177 8.31347 9.39089 9.91234 10.26646 11.31307 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010207 B = 0.004582 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2742.525254 B = 6108.921747 C = 8337.400850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.055 4.055 3 C -0.221 4.221 4 S 0.247 5.753 5 C -0.268 4.268 6 C 0.603 3.397 7 O -0.544 6.544 8 N -0.606 5.606 9 C 0.060 3.940 10 C 0.178 3.822 11 H 0.071 0.929 12 N -0.709 5.709 13 C -0.251 4.251 14 H 0.073 0.927 15 C -0.005 4.005 16 N -0.928 5.928 17 Si 0.907 3.093 18 H -0.288 1.288 19 H -0.290 1.290 20 H -0.280 1.280 21 C -0.137 4.137 22 C 0.140 3.860 23 H 0.075 0.925 24 C -0.160 4.160 25 C -0.055 4.055 26 C -0.128 4.128 27 C -0.091 4.091 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.388 0.612 36 H 0.257 0.743 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.056 0.944 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.147 0.853 43 H 0.066 0.934 44 H 0.064 0.936 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.340 -0.768 16.495 16.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.094 4.094 3 C -0.340 4.340 4 S 0.519 5.481 5 C -0.388 4.388 6 C 0.392 3.608 7 O -0.424 6.424 8 N -0.339 5.339 9 C -0.067 4.067 10 C 0.065 3.935 11 H 0.088 0.912 12 N -0.348 5.348 13 C -0.382 4.382 14 H 0.091 0.909 15 C -0.202 4.202 16 N -0.575 5.575 17 Si 0.737 3.263 18 H -0.215 1.215 19 H -0.217 1.217 20 H -0.206 1.206 21 C -0.176 4.176 22 C 0.037 3.963 23 H 0.093 0.907 24 C -0.219 4.219 25 C -0.089 4.089 26 C -0.140 4.140 27 C -0.150 4.150 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.222 0.778 36 H 0.067 0.933 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.165 0.835 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.243 -0.753 15.279 15.637 hybrid contribution 0.180 -0.596 1.013 1.189 sum -3.063 -1.350 16.292 16.632 Atomic orbital electron populations 1.21785 0.94269 1.01956 1.02534 1.20101 0.96217 0.89771 1.03273 1.24567 1.07463 1.02496 0.99517 1.84053 1.58021 1.01271 1.04738 1.24521 1.16526 0.99659 0.98101 1.16592 0.77415 0.86048 0.80760 1.90768 1.53050 1.41050 1.57540 1.48453 1.68687 1.11620 1.05190 1.23729 1.02681 0.89734 0.90568 1.21244 0.96271 0.89965 0.86045 0.91152 1.42327 1.44339 1.27708 1.20462 1.19257 1.15343 0.99855 1.03756 0.90892 1.24758 0.98753 0.99232 0.97466 1.69658 1.30905 1.40762 1.16184 0.86206 0.78863 0.83244 0.77964 1.21532 1.21661 1.20592 1.23061 1.03079 0.98366 0.93109 1.21520 0.98124 0.84191 0.92454 0.90740 1.22125 0.98543 0.98526 1.02657 1.20482 0.97718 0.95703 0.95017 1.18561 1.05143 0.94035 0.96264 1.20477 1.01807 1.00790 0.91940 0.92026 0.92393 0.92242 0.90587 0.90201 0.90687 0.90732 0.77752 0.93272 0.90042 0.90237 0.92466 0.91769 0.91633 0.83533 0.91558 0.91669 0.91649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.90 37.16 0.37 -0.94 16 2 C -0.05 -0.54 5.72 -27.88 -0.16 -0.70 16 3 C -0.22 -2.71 5.53 -35.86 -0.20 -2.91 16 4 S 0.25 3.50 18.62 -107.50 -2.00 1.50 16 5 C -0.27 -4.17 6.34 -36.79 -0.23 -4.40 16 6 C 0.60 10.50 7.56 -12.90 -0.10 10.41 16 7 O -0.54 -10.57 16.12 5.19 0.08 -10.48 16 8 N -0.61 -10.02 3.07 -164.58 -0.51 -10.53 16 9 C 0.06 1.04 4.97 -2.53 -0.01 1.02 16 10 C 0.18 3.28 3.71 -65.78 -0.24 3.04 16 11 H 0.07 1.33 8.09 -51.93 -0.42 0.91 16 12 N -0.71 -16.28 5.24 -51.35 -0.27 -16.55 16 13 C -0.25 -6.47 9.96 -15.06 -0.15 -6.62 16 14 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 15 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 16 N -0.93 -26.43 13.06 55.49 0.72 -25.70 16 17 Si 0.91 21.23 29.55 -169.99 -5.02 16.20 16 18 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 C -0.14 -2.11 6.12 -24.90 -0.15 -2.27 16 22 C 0.14 2.12 3.43 -66.95 -0.23 1.89 16 23 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 24 C -0.16 -2.22 9.11 37.16 0.34 -1.88 16 25 C -0.06 -0.77 9.80 -40.43 -0.40 -1.17 16 26 C -0.13 -1.55 5.78 -106.45 -0.62 -2.16 16 27 C -0.09 -0.82 9.55 36.01 0.34 -0.48 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.49 7.80 -51.93 -0.41 0.09 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.08 0.67 7.25 -51.93 -0.38 0.29 16 33 H 0.07 1.35 7.95 -51.93 -0.41 0.93 16 34 H 0.07 1.29 5.75 -38.85 -0.22 1.07 16 35 H 0.39 9.47 7.76 -40.82 -0.32 9.15 16 36 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 37 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.08 1.23 7.71 -51.93 -0.40 0.83 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.06 0.97 7.09 -51.93 -0.37 0.60 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.15 1.93 8.06 -52.49 -0.42 1.51 16 43 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 45 H 0.06 0.52 6.86 -51.93 -0.36 0.16 16 LS Contribution 373.69 15.07 5.63 5.63 Total: -1.00 -29.57 373.69 -9.95 -39.51 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -7.05 Total: 7.80 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: -1.53 Total: -7.39 kcal Atomic # 7 Polarization: -52.73 SS G_CDS: -0.05 Total: -52.78 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.08 Total: -10.48 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 3.50 SS G_CDS: -2.00 Total: 1.50 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.57 -9.95 -39.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989766615.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.450 kcal (2) G-P(sol) polarization free energy of solvation -29.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds