Wall clock time and date at job start Tue Mar 31 2020 13:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50695 * 109.46945 * 2 1 4 4 S 1.70618 * 124.52467 * 270.02415 * 3 2 1 5 5 C 1.75833 * 91.56250 * 179.97438 * 4 3 2 6 6 C 1.46581 * 125.45894 * 179.97438 * 5 4 3 7 7 O 1.21696 * 120.00241 * 174.07847 * 6 5 4 8 8 N 1.34778 * 119.99640 * 354.07377 * 6 5 4 9 9 C 1.47422 * 125.65274 * 354.43369 * 8 6 5 10 10 C 1.54912 * 104.83644 * 204.08333 * 9 8 6 11 11 H 1.08996 * 111.03613 * 81.07701 * 10 9 8 12 12 N 1.46493 * 111.00205 * 204.92020 * 10 9 8 13 13 C 1.36939 * 119.99636 * 267.19229 * 12 10 9 14 14 H 1.07999 * 120.00095 * 0.02562 * 13 12 10 15 15 C 1.38815 * 119.99873 * 180.28058 * 13 12 10 16 16 N 1.31621 * 120.00062 * 359.72083 * 15 13 12 17 17 Si 1.86805 * 119.99989 * 179.72388 * 15 13 12 18 18 H 1.48494 * 109.46806 * 89.99854 * 17 15 13 19 19 H 1.48497 * 109.47070 * 209.99762 * 17 15 13 20 20 H 1.48497 * 109.46863 * 330.00063 * 17 15 13 21 21 C 1.55163 * 101.57870 * 322.99203 * 10 9 8 22 22 C 1.47027 * 125.64746 * 174.38102 * 8 6 5 23 23 H 1.08997 * 109.88265 * 59.56976 * 22 8 6 24 24 C 1.53002 * 110.01053 * 298.47836 * 22 8 6 25 25 C 1.36651 * 109.08481 * 0.24225 * 5 4 3 26 26 C 1.33816 * 124.52095 * 90.00777 * 3 2 1 27 27 C 1.50700 * 122.44932 * 359.97438 * 26 3 2 28 28 H 1.09004 * 109.47059 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46483 * 299.99506 * 1 2 3 30 30 H 1.08998 * 109.47222 * 59.99665 * 1 2 3 31 31 H 1.09005 * 109.46483 * 240.00494 * 2 1 3 32 32 H 1.08998 * 109.47222 * 120.00335 * 2 1 3 33 33 H 1.09001 * 110.36428 * 85.24290 * 9 8 6 34 34 H 1.08998 * 110.36776 * 322.92359 * 9 8 6 35 35 H 0.97004 * 120.00335 * 87.20042 * 12 10 9 36 36 H 0.97002 * 119.99839 * 180.02562 * 16 15 13 37 37 H 1.08992 * 110.71778 * 153.86760 * 21 10 9 38 38 H 1.08998 * 110.71667 * 277.13855 * 21 10 9 39 39 H 1.09000 * 109.46992 * 302.11561 * 24 22 8 40 40 H 1.08995 * 109.46933 * 62.11372 * 24 22 8 41 41 H 1.09001 * 109.47020 * 182.11549 * 24 22 8 42 42 H 1.07997 * 123.34918 * 179.75308 * 25 5 4 43 43 H 1.08999 * 109.47573 * 90.00027 * 27 26 3 44 44 H 1.09000 * 109.47288 * 210.00552 * 27 26 3 45 45 H 1.09001 * 109.47004 * 329.99903 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 16 2.3541 2.3327 -1.4057 5 6 2.8454 3.7237 -0.4490 6 6 3.2997 5.0089 -0.9881 7 8 3.5140 5.9422 -0.2371 8 7 3.4801 5.1568 -2.3155 9 6 3.3710 4.0854 -3.3222 10 6 4.2341 4.5710 -4.5135 11 1 5.2911 4.3707 -4.3381 12 7 3.7879 3.9607 -5.7683 13 6 4.3679 2.8016 -6.2101 14 1 5.1540 2.3372 -5.6333 15 6 3.9492 2.2265 -7.4021 16 7 2.9908 2.7923 -8.1048 17 14 4.7457 0.6495 -8.0088 18 1 4.0024 -0.5187 -7.4721 19 1 4.7131 0.6176 -9.4930 20 1 6.1549 0.5959 -7.5433 21 6 3.9481 6.0960 -4.5041 22 6 3.8172 6.4138 -2.9996 23 1 4.7623 6.8011 -2.6191 24 6 2.7070 7.4435 -2.7800 25 6 2.7417 3.4128 0.8776 26 6 2.2852 2.1357 1.1025 27 6 2.0884 1.5800 2.4894 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 2.3335 3.9599 -3.6318 34 1 3.7649 3.1500 -2.9249 35 1 3.0816 4.3778 -6.2862 36 1 2.6979 2.3901 -8.9376 37 1 4.7793 6.6469 -4.9438 38 1 3.0177 6.3170 -5.0272 39 1 1.7620 7.0426 -3.1463 40 1 2.6205 7.6630 -1.7159 41 1 2.9478 8.3584 -3.3213 42 1 2.9907 4.1027 1.6703 43 1 3.0097 1.1031 2.8240 44 1 1.8297 2.3896 3.1719 45 1 1.2833 0.8453 2.4756 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989766615.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:00 Heat of formation + Delta-G solvation = -19.885341 kcal Electronic energy + Delta-G solvation = -25238.569363 eV Core-core repulsion = 21767.658259 eV Total energy + Delta-G solvation = -3470.911105 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.32876 -39.74890 -38.59065 -36.01482 -34.77492 -33.34630 -33.01126 -31.09050 -30.10899 -28.34148 -26.88842 -26.17424 -25.50599 -23.46670 -22.63304 -21.88673 -20.54904 -19.37722 -19.17153 -18.86816 -17.54616 -17.07757 -16.87212 -16.31683 -15.63190 -15.49492 -15.37122 -15.11565 -14.98817 -14.90064 -14.36191 -14.26660 -13.99280 -13.83428 -13.49183 -13.45109 -13.16355 -13.08958 -13.02280 -12.86110 -12.82503 -12.64771 -12.44607 -12.20278 -12.14772 -12.06299 -12.01633 -11.79410 -11.53418 -11.42145 -11.16670 -10.92058 -9.95404 -9.50558 -9.33650 -9.06402 -7.94209 -5.24493 -0.49933 0.50561 1.00243 1.31652 1.51283 1.51816 1.59893 1.84216 2.09823 2.57243 3.32543 3.36246 3.72348 3.76471 3.82701 3.93166 4.09130 4.12799 4.20210 4.22221 4.38262 4.41435 4.44182 4.46702 4.50802 4.62804 4.69150 4.78264 4.81021 4.85742 4.88163 4.99095 5.01354 5.04754 5.08145 5.10399 5.19065 5.29483 5.33212 5.36719 5.42898 5.54952 5.56935 6.26173 6.36875 6.96625 7.34856 8.03575 8.29439 9.28343 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010207 B = 0.004582 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2742.525254 B = 6108.921747 C = 8337.400850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.057 4.057 3 C -0.207 4.207 4 S 0.217 5.783 5 C -0.298 4.298 6 C 0.600 3.400 7 O -0.570 6.570 8 N -0.607 5.607 9 C 0.076 3.924 10 C 0.171 3.829 11 H 0.068 0.932 12 N -0.718 5.718 13 C -0.246 4.246 14 H 0.078 0.922 15 C -0.063 4.063 16 N -0.964 5.964 17 Si 0.965 3.035 18 H -0.287 1.287 19 H -0.298 1.298 20 H -0.270 1.270 21 C -0.124 4.124 22 C 0.137 3.863 23 H 0.080 0.920 24 C -0.152 4.152 25 C -0.048 4.048 26 C -0.132 4.132 27 C -0.090 4.090 28 H 0.080 0.920 29 H 0.062 0.938 30 H 0.044 0.956 31 H 0.075 0.925 32 H 0.102 0.898 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.379 0.621 36 H 0.252 0.748 37 H 0.098 0.902 38 H 0.079 0.921 39 H 0.052 0.948 40 H 0.049 0.951 41 H 0.090 0.910 42 H 0.152 0.848 43 H 0.078 0.922 44 H 0.073 0.927 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.173 -1.805 18.189 18.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.096 4.096 3 C -0.327 4.327 4 S 0.489 5.511 5 C -0.418 4.418 6 C 0.391 3.609 7 O -0.453 6.453 8 N -0.339 5.339 9 C -0.051 4.051 10 C 0.060 3.940 11 H 0.086 0.914 12 N -0.357 5.357 13 C -0.377 4.377 14 H 0.096 0.904 15 C -0.256 4.256 16 N -0.614 5.614 17 Si 0.795 3.205 18 H -0.214 1.214 19 H -0.224 1.224 20 H -0.195 1.195 21 C -0.162 4.162 22 C 0.035 3.965 23 H 0.098 0.902 24 C -0.210 4.210 25 C -0.083 4.083 26 C -0.144 4.144 27 C -0.148 4.148 28 H 0.098 0.902 29 H 0.081 0.919 30 H 0.063 0.937 31 H 0.093 0.907 32 H 0.120 0.880 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.212 0.788 36 H 0.061 0.939 37 H 0.116 0.884 38 H 0.098 0.902 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.109 0.891 42 H 0.169 0.831 43 H 0.096 0.904 44 H 0.092 0.908 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.052 -1.777 17.008 17.370 hybrid contribution 0.123 -0.278 0.626 0.696 sum -2.929 -2.055 17.634 17.993 Atomic orbital electron populations 1.21780 0.93395 1.03080 1.02090 1.20258 0.96870 0.88101 1.04325 1.24871 1.06201 1.03370 0.98225 1.84070 1.58956 1.01707 1.06382 1.24439 1.18905 0.99531 0.98958 1.16858 0.76937 0.86486 0.80665 1.90739 1.54486 1.42095 1.57981 1.48472 1.68512 1.11855 1.05047 1.23370 1.01673 0.89978 0.90117 1.21387 0.96094 0.91882 0.84671 0.91383 1.42401 1.44137 1.27320 1.21855 1.19598 1.14576 1.00234 1.03307 0.90405 1.25454 0.99790 1.02219 0.98127 1.69796 1.32730 1.42288 1.16538 0.85269 0.78478 0.80009 0.76787 1.21355 1.22440 1.19491 1.22967 1.03726 0.96038 0.93498 1.21650 0.98934 0.84047 0.91898 0.90238 1.22055 0.97801 0.99120 1.02035 1.20754 0.96498 0.96557 0.94486 1.18871 1.04344 0.93217 0.97925 1.20564 1.02998 1.01455 0.89813 0.90154 0.91867 0.93685 0.90671 0.87969 0.91653 0.90826 0.78817 0.93930 0.88397 0.90228 0.92908 0.93142 0.89122 0.83081 0.90359 0.90786 0.90113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.90 71.98 0.71 -1.53 16 2 C -0.06 -0.97 5.72 29.85 0.17 -0.80 16 3 C -0.21 -4.75 5.53 24.68 0.14 -4.62 16 4 S 0.22 6.14 18.62 -56.49 -1.05 5.09 16 5 C -0.30 -9.30 6.34 24.08 0.15 -9.15 16 6 C 0.60 21.08 7.56 86.42 0.65 21.73 16 7 O -0.57 -22.33 16.12 -4.33 -0.07 -22.40 16 8 N -0.61 -20.07 3.07 -792.82 -2.43 -22.51 16 9 C 0.08 2.63 4.97 86.86 0.43 3.06 16 10 C 0.17 6.28 3.71 46.39 0.17 6.45 16 11 H 0.07 2.54 8.09 -2.39 -0.02 2.52 16 12 N -0.72 -33.18 5.24 -316.37 -1.66 -34.84 16 13 C -0.25 -12.64 9.96 84.03 0.84 -11.80 16 14 H 0.08 3.85 7.83 -2.91 -0.02 3.83 16 15 C -0.06 -3.39 5.50 84.86 0.47 -2.92 16 16 N -0.96 -55.72 13.06 21.65 0.28 -55.44 16 17 Si 0.97 43.71 29.55 68.60 2.03 45.73 16 18 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 19 H -0.30 -13.73 7.11 99.48 0.71 -13.02 16 20 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 21 C -0.12 -3.70 6.12 31.78 0.19 -3.51 16 22 C 0.14 4.04 3.43 45.34 0.16 4.20 16 23 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 24 C -0.15 -4.07 9.11 71.98 0.66 -3.41 16 25 C -0.05 -1.30 9.80 21.72 0.21 -1.09 16 26 C -0.13 -2.94 5.78 -21.05 -0.12 -3.06 16 27 C -0.09 -1.33 9.55 71.24 0.68 -0.65 16 28 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 29 H 0.06 0.91 7.80 -2.38 -0.02 0.89 16 30 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 32 H 0.10 1.34 7.25 -2.39 -0.02 1.33 16 33 H 0.07 2.40 7.95 -2.39 -0.02 2.38 16 34 H 0.07 2.58 5.75 -10.70 -0.06 2.52 16 35 H 0.38 18.78 7.76 -92.71 -0.72 18.06 16 36 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 37 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 38 H 0.08 2.41 7.71 -2.39 -0.02 2.39 16 39 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.05 1.50 7.09 -2.39 -0.02 1.48 16 41 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.15 3.86 8.06 -2.91 -0.02 3.83 16 43 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.07 0.99 8.13 -2.39 -0.02 0.97 16 45 H 0.08 0.96 6.86 -2.39 -0.02 0.95 16 Total: -1.00 -63.41 373.69 2.83 -60.58 By element: Atomic # 1 Polarization: 30.65 SS G_CDS: 0.22 Total: 30.88 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: 5.51 Total: -7.09 kcal Atomic # 7 Polarization: -108.98 SS G_CDS: -3.81 Total: -112.79 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -0.07 Total: -22.40 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 16 Polarization: 6.14 SS G_CDS: -1.05 Total: 5.09 kcal Total: -63.41 2.83 -60.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989766615.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.694 kcal (2) G-P(sol) polarization free energy of solvation -63.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds