Wall clock time and date at job start Tue Mar 31 2020 13:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50695 * 109.46918 * 2 1 4 4 S 1.70622 * 124.52559 * 269.97775 * 3 2 1 5 5 C 1.75831 * 91.56408 * 179.86011 * 4 3 2 6 6 C 1.46586 * 125.45582 * 180.18588 * 5 4 3 7 7 O 1.21704 * 119.99469 * 186.35650 * 6 5 4 8 8 N 1.34773 * 120.00117 * 6.35301 * 6 5 4 9 9 C 1.47426 * 125.64722 * 5.31151 * 8 6 5 10 10 C 1.55136 * 104.72064 * 155.81939 * 9 8 6 11 11 H 1.08996 * 111.22152 * 279.17858 * 10 9 8 12 12 N 1.46500 * 110.90718 * 155.27430 * 10 9 8 13 13 C 1.36944 * 119.99702 * 92.97431 * 12 10 9 14 14 H 1.08002 * 120.00028 * 359.97438 * 13 12 10 15 15 C 1.38811 * 119.99806 * 179.97438 * 13 12 10 16 16 N 1.31620 * 119.99791 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99948 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.46946 * 89.99940 * 17 15 13 19 19 H 1.48500 * 109.47232 * 210.00032 * 17 15 13 20 20 H 1.48500 * 109.46979 * 330.00329 * 17 15 13 21 21 C 1.55155 * 101.48620 * 37.29551 * 10 9 8 22 22 C 1.47022 * 125.64691 * 185.62665 * 8 6 5 23 23 H 1.09002 * 109.87886 * 300.43600 * 22 8 6 24 24 C 1.52993 * 109.88741 * 61.60435 * 22 8 6 25 25 C 1.36644 * 109.08605 * 0.28177 * 5 4 3 26 26 C 1.33815 * 124.52504 * 90.00628 * 3 2 1 27 27 C 1.50707 * 122.44652 * 359.97438 * 26 3 2 28 28 H 1.08993 * 109.47282 * 59.99584 * 1 2 3 29 29 H 1.08999 * 109.47109 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46908 * 299.99611 * 1 2 3 31 31 H 1.09001 * 109.46908 * 240.00389 * 2 1 3 32 32 H 1.08997 * 109.47429 * 119.99940 * 2 1 3 33 33 H 1.09001 * 110.37027 * 274.74378 * 9 8 6 34 34 H 1.09001 * 110.36852 * 37.07419 * 9 8 6 35 35 H 0.96998 * 120.00264 * 272.97988 * 12 10 9 36 36 H 0.97006 * 119.99820 * 180.02562 * 16 15 13 37 37 H 1.09000 * 110.72295 * 205.97466 * 21 10 9 38 38 H 1.09002 * 110.71827 * 82.69318 * 21 10 9 39 39 H 1.08997 * 109.47104 * 58.54477 * 24 22 8 40 40 H 1.09001 * 109.47383 * 178.54627 * 24 22 8 41 41 H 1.09003 * 109.46606 * 298.54614 * 24 22 8 42 42 H 1.07992 * 123.35339 * 179.97438 * 25 5 4 43 43 H 1.09001 * 109.47314 * 270.00598 * 27 26 3 44 44 H 1.08999 * 109.47018 * 30.00798 * 27 26 3 45 45 H 1.09002 * 109.46719 * 150.00486 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 16 2.3551 2.3324 -1.4057 5 6 2.8425 3.7248 -0.4491 6 6 3.2914 5.0118 -0.9883 7 8 3.7159 5.8710 -0.2381 8 7 3.2342 5.2436 -2.3147 9 6 2.6441 4.3410 -3.3199 10 6 2.2634 5.2664 -4.5055 11 1 1.3162 5.7734 -4.3218 12 7 2.2184 4.5146 -5.7620 13 6 1.0360 3.9775 -6.1965 14 1 0.1368 4.1078 -5.6126 15 6 0.9932 3.2655 -7.3874 16 7 2.0892 3.1063 -8.0986 17 14 -0.6197 2.5334 -7.9805 18 1 -1.3274 3.5213 -8.8340 19 1 -0.3457 1.3048 -8.7683 20 1 -1.4683 2.1924 -6.8105 21 6 3.4433 6.2740 -4.5022 22 6 3.7559 6.4354 -2.9995 23 1 3.2660 7.3292 -2.6130 24 6 5.2681 6.5357 -2.7905 25 6 2.7376 3.4143 0.8775 26 6 2.2852 2.1358 1.1025 27 6 2.0883 1.5801 2.4895 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.3744 3.5963 -3.6365 34 1 1.7551 3.8550 -2.9180 35 1 3.0261 4.3972 -6.2862 36 1 2.0592 2.6091 -8.9310 37 1 3.1388 7.2259 -4.9372 38 1 4.3024 5.8634 -5.0328 39 1 5.7484 5.6356 -3.1740 40 1 5.6515 7.4067 -3.3220 41 1 5.4818 6.6364 -1.7263 42 1 2.9810 4.1061 1.6702 43 1 1.0720 1.7889 2.8237 44 1 2.2522 0.5026 2.4758 45 1 2.7985 2.0469 3.1720 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989766616.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:05 Heat of formation + Delta-G solvation = -3.483977 kcal Electronic energy + Delta-G solvation = -25263.063933 eV Core-core repulsion = 21792.864045 eV Total energy + Delta-G solvation = -3470.199888 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.99084 -38.68463 -37.21936 -34.25681 -33.84327 -31.90086 -31.43512 -30.18046 -28.46775 -27.43668 -25.58366 -24.92931 -23.80374 -22.54491 -21.38172 -20.42861 -19.34709 -18.15889 -17.75265 -17.31854 -16.19695 -15.93736 -15.42219 -14.70753 -14.60209 -14.35288 -13.99022 -13.89434 -13.65998 -13.51876 -13.25455 -12.96348 -12.79394 -12.64780 -12.45185 -12.29137 -12.22687 -12.08295 -11.75129 -11.70011 -11.40261 -11.24674 -11.15510 -11.08595 -10.92916 -10.69594 -10.35960 -10.30940 -10.07754 -9.85062 -9.76545 -9.07816 -8.69836 -8.33413 -8.23805 -7.15644 -5.90458 -3.21716 0.61399 1.61092 2.05873 2.38772 3.14173 3.35811 3.36892 3.42220 3.43196 4.45540 4.59126 4.66167 4.89015 5.01350 5.04476 5.13216 5.17120 5.22221 5.26228 5.37592 5.45810 5.49107 5.51693 5.60363 5.63410 5.69807 5.74458 5.76062 5.78978 5.81313 5.93615 6.02917 6.06109 6.06189 6.12724 6.29566 6.33801 6.40427 6.41566 6.48628 6.63421 6.76298 7.58811 7.72302 8.26175 8.31419 9.39063 9.91222 10.26640 11.31287 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010071 B = 0.004728 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2779.697654 B = 5920.626329 C = 8341.492382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.054 4.054 3 C -0.221 4.221 4 S 0.247 5.753 5 C -0.267 4.267 6 C 0.603 3.397 7 O -0.544 6.544 8 N -0.607 5.607 9 C 0.060 3.940 10 C 0.178 3.822 11 H 0.071 0.929 12 N -0.709 5.709 13 C -0.251 4.251 14 H 0.073 0.927 15 C -0.005 4.005 16 N -0.928 5.928 17 Si 0.907 3.093 18 H -0.288 1.288 19 H -0.290 1.290 20 H -0.280 1.280 21 C -0.137 4.137 22 C 0.140 3.860 23 H 0.075 0.925 24 C -0.161 4.161 25 C -0.055 4.055 26 C -0.128 4.128 27 C -0.091 4.091 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.388 0.612 36 H 0.257 0.743 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.056 0.944 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.147 0.853 43 H 0.066 0.934 44 H 0.064 0.936 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.438 -2.477 16.495 16.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.093 4.093 3 C -0.341 4.341 4 S 0.519 5.481 5 C -0.388 4.388 6 C 0.392 3.608 7 O -0.424 6.424 8 N -0.340 5.340 9 C -0.067 4.067 10 C 0.065 3.935 11 H 0.089 0.911 12 N -0.348 5.348 13 C -0.382 4.382 14 H 0.091 0.909 15 C -0.202 4.202 16 N -0.575 5.575 17 Si 0.737 3.263 18 H -0.215 1.215 19 H -0.217 1.217 20 H -0.206 1.206 21 C -0.176 4.176 22 C 0.037 3.963 23 H 0.093 0.907 24 C -0.219 4.219 25 C -0.089 4.089 26 C -0.140 4.140 27 C -0.149 4.149 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.222 0.778 36 H 0.067 0.933 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.165 0.835 43 H 0.085 0.915 44 H 0.083 0.917 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.383 -2.423 15.288 15.540 hybrid contribution -0.495 -0.347 1.006 1.174 sum 0.888 -2.770 16.294 16.552 Atomic orbital electron populations 1.21776 0.94175 1.01971 1.02637 1.20112 0.96321 0.89739 1.03144 1.24562 1.07632 1.02341 0.99515 1.84050 1.58536 1.00790 1.04741 1.24521 1.16542 0.99623 0.98108 1.16595 0.78206 0.85262 0.80762 1.90770 1.48433 1.45666 1.57554 1.48457 1.58159 1.22057 1.05282 1.23778 0.97741 0.94622 0.90594 1.21289 0.96042 0.90108 0.86063 0.91110 1.42332 1.10039 1.62298 1.20176 1.19256 0.87906 1.27275 1.03767 0.90895 1.24756 0.97177 1.00786 0.97492 1.69659 1.26342 1.45621 1.15883 0.86208 0.82930 0.78540 0.78607 1.21539 1.21661 1.20580 1.23068 1.00268 1.01165 0.93139 1.21527 0.94379 0.87908 0.92464 0.90714 1.22127 0.95080 1.01982 1.02678 1.20479 0.97693 0.95727 0.95015 1.18557 1.05123 0.94066 0.96271 1.20476 1.01883 1.00629 0.91936 0.92142 0.92052 0.92391 0.90728 0.90160 0.90687 0.90720 0.77755 0.93273 0.90052 0.90236 0.92457 0.91646 0.91759 0.83533 0.91549 0.91668 0.91724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.90 37.16 0.37 -0.99 16 2 C -0.05 -0.53 6.03 -27.88 -0.17 -0.70 16 3 C -0.22 -2.71 5.53 -35.86 -0.20 -2.91 16 4 S 0.25 3.50 18.62 -107.50 -2.00 1.50 16 5 C -0.27 -4.17 6.34 -36.79 -0.23 -4.40 16 6 C 0.60 10.50 7.55 -12.90 -0.10 10.41 16 7 O -0.54 -10.57 16.10 5.19 0.08 -10.49 16 8 N -0.61 -10.02 3.06 -164.43 -0.50 -10.53 16 9 C 0.06 1.03 4.98 -2.40 -0.01 1.02 16 10 C 0.18 3.28 3.73 -65.66 -0.24 3.04 16 11 H 0.07 1.33 8.09 -51.93 -0.42 0.91 16 12 N -0.71 -16.28 5.24 -51.23 -0.27 -16.55 16 13 C -0.25 -6.46 9.96 -15.06 -0.15 -6.61 16 14 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 15 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 16 N -0.93 -26.42 13.06 55.49 0.72 -25.70 16 17 Si 0.91 21.22 29.55 -169.99 -5.02 16.19 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 C -0.14 -2.12 6.12 -24.89 -0.15 -2.27 16 22 C 0.14 2.12 3.43 -66.95 -0.23 1.89 16 23 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 24 C -0.16 -2.22 9.11 37.15 0.34 -1.88 16 25 C -0.06 -0.77 9.80 -40.44 -0.40 -1.17 16 26 C -0.13 -1.55 5.78 -106.45 -0.62 -2.16 16 27 C -0.09 -0.81 9.84 36.01 0.35 -0.46 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.66 6.57 -51.93 -0.34 0.32 16 33 H 0.07 1.35 7.95 -51.93 -0.41 0.93 16 34 H 0.08 1.29 5.75 -38.83 -0.22 1.07 16 35 H 0.39 9.47 7.76 -40.82 -0.32 9.15 16 36 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 37 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.08 1.23 7.71 -51.93 -0.40 0.83 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.06 0.97 7.07 -51.93 -0.37 0.60 16 42 H 0.15 1.93 8.06 -52.49 -0.42 1.51 16 43 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.51 6.54 -51.93 -0.34 0.17 16 45 H 0.06 0.53 8.13 -51.93 -0.42 0.10 16 LS Contribution 373.60 15.07 5.63 5.63 Total: -1.00 -29.56 373.60 -9.91 -39.47 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -7.02 Total: 7.91 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: -1.53 Total: -7.43 kcal Atomic # 7 Polarization: -52.72 SS G_CDS: -0.05 Total: -52.77 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.08 Total: -10.49 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: 3.50 SS G_CDS: -2.00 Total: 1.50 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.56 -9.91 -39.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989766616.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.984 kcal (2) G-P(sol) polarization free energy of solvation -29.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds