Wall clock time and date at job start Tue Mar 31 2020 13:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50695 * 109.46918 * 2 1 4 4 S 1.70622 * 124.52559 * 269.97775 * 3 2 1 5 5 C 1.75831 * 91.56408 * 179.86011 * 4 3 2 6 6 C 1.46586 * 125.45582 * 180.18588 * 5 4 3 7 7 O 1.21704 * 119.99469 * 186.35650 * 6 5 4 8 8 N 1.34773 * 120.00117 * 6.35301 * 6 5 4 9 9 C 1.47426 * 125.64722 * 5.31151 * 8 6 5 10 10 C 1.55136 * 104.72064 * 155.81939 * 9 8 6 11 11 H 1.08996 * 111.22152 * 279.17858 * 10 9 8 12 12 N 1.46500 * 110.90718 * 155.27430 * 10 9 8 13 13 C 1.36944 * 119.99702 * 92.97431 * 12 10 9 14 14 H 1.08002 * 120.00028 * 359.97438 * 13 12 10 15 15 C 1.38811 * 119.99806 * 179.97438 * 13 12 10 16 16 N 1.31620 * 119.99791 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99948 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.46946 * 89.99940 * 17 15 13 19 19 H 1.48500 * 109.47232 * 210.00032 * 17 15 13 20 20 H 1.48500 * 109.46979 * 330.00329 * 17 15 13 21 21 C 1.55155 * 101.48620 * 37.29551 * 10 9 8 22 22 C 1.47022 * 125.64691 * 185.62665 * 8 6 5 23 23 H 1.09002 * 109.87886 * 300.43600 * 22 8 6 24 24 C 1.52993 * 109.88741 * 61.60435 * 22 8 6 25 25 C 1.36644 * 109.08605 * 0.28177 * 5 4 3 26 26 C 1.33815 * 124.52504 * 90.00628 * 3 2 1 27 27 C 1.50707 * 122.44652 * 359.97438 * 26 3 2 28 28 H 1.08993 * 109.47282 * 59.99584 * 1 2 3 29 29 H 1.08999 * 109.47109 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46908 * 299.99611 * 1 2 3 31 31 H 1.09001 * 109.46908 * 240.00389 * 2 1 3 32 32 H 1.08997 * 109.47429 * 119.99940 * 2 1 3 33 33 H 1.09001 * 110.37027 * 274.74378 * 9 8 6 34 34 H 1.09001 * 110.36852 * 37.07419 * 9 8 6 35 35 H 0.96998 * 120.00264 * 272.97988 * 12 10 9 36 36 H 0.97006 * 119.99820 * 180.02562 * 16 15 13 37 37 H 1.09000 * 110.72295 * 205.97466 * 21 10 9 38 38 H 1.09002 * 110.71827 * 82.69318 * 21 10 9 39 39 H 1.08997 * 109.47104 * 58.54477 * 24 22 8 40 40 H 1.09001 * 109.47383 * 178.54627 * 24 22 8 41 41 H 1.09003 * 109.46606 * 298.54614 * 24 22 8 42 42 H 1.07992 * 123.35339 * 179.97438 * 25 5 4 43 43 H 1.09001 * 109.47314 * 270.00598 * 27 26 3 44 44 H 1.08999 * 109.47018 * 30.00798 * 27 26 3 45 45 H 1.09002 * 109.46719 * 150.00486 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 16 2.3551 2.3324 -1.4057 5 6 2.8425 3.7248 -0.4491 6 6 3.2914 5.0118 -0.9883 7 8 3.7159 5.8710 -0.2381 8 7 3.2342 5.2436 -2.3147 9 6 2.6441 4.3410 -3.3199 10 6 2.2634 5.2664 -4.5055 11 1 1.3162 5.7734 -4.3218 12 7 2.2184 4.5146 -5.7620 13 6 1.0360 3.9775 -6.1965 14 1 0.1368 4.1078 -5.6126 15 6 0.9932 3.2655 -7.3874 16 7 2.0892 3.1063 -8.0986 17 14 -0.6197 2.5334 -7.9805 18 1 -1.3274 3.5213 -8.8340 19 1 -0.3457 1.3048 -8.7683 20 1 -1.4683 2.1924 -6.8105 21 6 3.4433 6.2740 -4.5022 22 6 3.7559 6.4354 -2.9995 23 1 3.2660 7.3292 -2.6130 24 6 5.2681 6.5357 -2.7905 25 6 2.7376 3.4143 0.8775 26 6 2.2852 2.1358 1.1025 27 6 2.0883 1.5801 2.4895 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.3744 3.5963 -3.6365 34 1 1.7551 3.8550 -2.9180 35 1 3.0261 4.3972 -6.2862 36 1 2.0592 2.6091 -8.9310 37 1 3.1388 7.2259 -4.9372 38 1 4.3024 5.8634 -5.0328 39 1 5.7484 5.6356 -3.1740 40 1 5.6515 7.4067 -3.3220 41 1 5.4818 6.6364 -1.7263 42 1 2.9810 4.1061 1.6702 43 1 1.0720 1.7889 2.8237 44 1 2.2522 0.5026 2.4758 45 1 2.7985 2.0469 3.1720 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989766616.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:05 Heat of formation + Delta-G solvation = -19.304818 kcal Electronic energy + Delta-G solvation = -25263.749977 eV Core-core repulsion = 21792.864045 eV Total energy + Delta-G solvation = -3470.885931 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.32683 -39.74526 -38.58538 -36.01442 -34.76611 -33.34545 -33.00740 -31.10151 -30.10543 -28.31834 -26.88468 -26.18328 -25.51339 -23.47897 -22.62630 -21.88473 -20.54768 -19.37074 -19.17562 -18.85893 -17.56814 -17.06608 -16.86130 -16.26512 -15.75202 -15.41752 -15.40378 -15.19663 -14.91706 -14.79649 -14.39979 -14.33308 -13.98012 -13.84397 -13.49272 -13.43145 -13.15361 -13.09809 -13.01235 -12.86115 -12.81434 -12.68090 -12.46601 -12.18908 -12.13848 -12.05194 -11.98415 -11.79630 -11.53454 -11.41427 -11.16554 -10.92335 -9.95468 -9.50654 -9.33798 -9.06242 -7.94229 -5.24493 -0.49673 0.50592 1.00134 1.32161 1.51180 1.51764 1.59768 1.84371 2.09943 2.57220 3.32617 3.36150 3.71978 3.76499 3.82822 3.93301 4.09849 4.12861 4.19766 4.21826 4.38404 4.40921 4.43406 4.46766 4.54229 4.62697 4.69202 4.75869 4.78701 4.85938 4.88653 4.98714 5.01211 5.03909 5.07934 5.12388 5.19225 5.31288 5.33278 5.37056 5.43981 5.54878 5.56961 6.26174 6.36930 6.96689 7.34844 8.03563 8.29441 9.28325 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010071 B = 0.004728 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2779.697654 B = 5920.626329 C = 8341.492382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.056 4.056 3 C -0.207 4.207 4 S 0.217 5.783 5 C -0.298 4.298 6 C 0.600 3.400 7 O -0.571 6.571 8 N -0.607 5.607 9 C 0.076 3.924 10 C 0.171 3.829 11 H 0.069 0.931 12 N -0.719 5.719 13 C -0.245 4.245 14 H 0.078 0.922 15 C -0.063 4.063 16 N -0.964 5.964 17 Si 0.965 3.035 18 H -0.289 1.289 19 H -0.297 1.297 20 H -0.269 1.269 21 C -0.124 4.124 22 C 0.138 3.862 23 H 0.080 0.920 24 C -0.152 4.152 25 C -0.048 4.048 26 C -0.132 4.132 27 C -0.089 4.089 28 H 0.042 0.958 29 H 0.079 0.921 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.104 0.896 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.379 0.621 36 H 0.252 0.748 37 H 0.097 0.903 38 H 0.079 0.921 39 H 0.052 0.948 40 H 0.090 0.910 41 H 0.049 0.951 42 H 0.152 0.848 43 H 0.077 0.923 44 H 0.081 0.919 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.701 -3.219 18.218 18.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.095 4.095 3 C -0.327 4.327 4 S 0.488 5.512 5 C -0.418 4.418 6 C 0.390 3.610 7 O -0.453 6.453 8 N -0.339 5.339 9 C -0.052 4.052 10 C 0.060 3.940 11 H 0.087 0.913 12 N -0.357 5.357 13 C -0.377 4.377 14 H 0.096 0.904 15 C -0.256 4.256 16 N -0.613 5.613 17 Si 0.794 3.206 18 H -0.216 1.216 19 H -0.224 1.224 20 H -0.193 1.193 21 C -0.163 4.163 22 C 0.035 3.965 23 H 0.098 0.902 24 C -0.210 4.210 25 C -0.083 4.083 26 C -0.144 4.144 27 C -0.147 4.147 28 H 0.062 0.938 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.122 0.878 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.212 0.788 36 H 0.061 0.939 37 H 0.116 0.884 38 H 0.098 0.902 39 H 0.071 0.929 40 H 0.109 0.891 41 H 0.068 0.932 42 H 0.169 0.831 43 H 0.096 0.904 44 H 0.100 0.900 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.634 -3.139 17.047 17.345 hybrid contribution -0.266 -0.120 0.610 0.676 sum 0.369 -3.258 17.656 17.958 Atomic orbital electron populations 1.21770 0.93532 1.03047 1.02029 1.20270 0.96761 0.88102 1.04352 1.24863 1.06368 1.03234 0.98215 1.84068 1.59417 1.01286 1.06400 1.24439 1.18964 0.99453 0.98968 1.16860 0.77728 0.85703 0.80667 1.90741 1.49842 1.46737 1.57995 1.48476 1.58031 1.22243 1.05140 1.23418 0.97507 0.94085 0.90143 1.21433 0.97323 0.90582 0.84679 0.91340 1.42405 1.08899 1.62849 1.21568 1.19596 0.88877 1.25907 1.03315 0.90414 1.25451 0.99874 1.02130 0.98136 1.69797 1.28160 1.47143 1.16250 0.85272 0.79786 0.77335 0.78171 1.21580 1.22360 1.19338 1.22973 0.98817 1.00935 0.93526 1.21657 0.95353 0.87597 0.91906 0.90215 1.22056 0.94003 1.02941 1.02022 1.20753 0.96465 0.96596 0.94481 1.18868 1.04317 0.93237 0.97940 1.20566 1.02838 1.01543 0.89796 0.93838 0.90176 0.91917 0.90657 0.87781 0.91624 0.90852 0.78817 0.93932 0.88410 0.90224 0.92875 0.89142 0.93152 0.83085 0.90430 0.90024 0.90837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 9.90 71.98 0.71 -1.62 16 2 C -0.06 -0.96 6.03 29.85 0.18 -0.78 16 3 C -0.21 -4.75 5.53 24.68 0.14 -4.61 16 4 S 0.22 6.12 18.62 -56.49 -1.05 5.07 16 5 C -0.30 -9.30 6.34 24.08 0.15 -9.15 16 6 C 0.60 21.08 7.55 86.42 0.65 21.73 16 7 O -0.57 -22.34 16.10 -4.36 -0.07 -22.41 16 8 N -0.61 -20.08 3.06 -792.35 -2.43 -22.51 16 9 C 0.08 2.62 4.98 86.93 0.43 3.06 16 10 C 0.17 6.28 3.73 46.46 0.17 6.46 16 11 H 0.07 2.55 8.09 -2.39 -0.02 2.53 16 12 N -0.72 -33.18 5.24 -316.00 -1.66 -34.84 16 13 C -0.25 -12.63 9.96 84.03 0.84 -11.79 16 14 H 0.08 3.85 7.83 -2.91 -0.02 3.83 16 15 C -0.06 -3.39 5.50 84.86 0.47 -2.92 16 16 N -0.96 -55.73 13.06 21.65 0.28 -55.44 16 17 Si 0.97 43.71 29.55 68.60 2.03 45.73 16 18 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 19 H -0.30 -13.65 7.11 99.48 0.71 -12.95 16 20 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 21 C -0.12 -3.71 6.12 31.78 0.19 -3.51 16 22 C 0.14 4.05 3.43 45.34 0.16 4.20 16 23 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 24 C -0.15 -4.07 9.11 71.98 0.66 -3.41 16 25 C -0.05 -1.30 9.80 21.72 0.21 -1.09 16 26 C -0.13 -2.94 5.78 -21.05 -0.12 -3.06 16 27 C -0.09 -1.31 9.84 71.24 0.70 -0.61 16 28 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.10 1.33 6.57 -2.39 -0.02 1.31 16 33 H 0.07 2.41 7.95 -2.39 -0.02 2.39 16 34 H 0.07 2.58 5.75 -10.71 -0.06 2.52 16 35 H 0.38 18.78 7.76 -92.71 -0.72 18.06 16 36 H 0.25 14.23 8.31 -92.70 -0.77 13.46 16 37 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 38 H 0.08 2.41 7.71 -2.39 -0.02 2.39 16 39 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.05 1.50 7.07 -2.39 -0.02 1.48 16 42 H 0.15 3.86 8.06 -2.91 -0.02 3.83 16 43 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.08 0.95 6.54 -2.39 -0.02 0.93 16 45 H 0.07 0.97 8.13 -2.39 -0.02 0.95 16 Total: -1.00 -63.45 373.60 2.87 -60.58 By element: Atomic # 1 Polarization: 30.69 SS G_CDS: 0.22 Total: 30.92 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: 5.54 Total: -7.11 kcal Atomic # 7 Polarization: -108.99 SS G_CDS: -3.80 Total: -112.79 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: -0.07 Total: -22.41 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 16 Polarization: 6.12 SS G_CDS: -1.05 Total: 5.07 kcal Total: -63.45 2.87 -60.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989766616.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.275 kcal (2) G-P(sol) polarization free energy of solvation -63.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds