Wall clock time and date at job start Tue Mar 31 2020 13:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50702 * 109.46856 * 2 1 4 4 C 1.37475 * 122.44876 * 265.02320 * 3 2 1 5 5 C 1.36653 * 113.29565 * 179.73420 * 4 3 2 6 6 C 1.46575 * 125.45955 * 180.02562 * 5 4 3 7 7 O 1.21709 * 119.99828 * 353.40881 * 6 5 4 8 8 N 1.34777 * 120.00440 * 173.40606 * 6 5 4 9 9 C 1.47425 * 125.64688 * 3.45194 * 8 6 5 10 10 C 1.54900 * 104.83321 * 204.08946 * 9 8 6 11 11 H 1.09004 * 111.00305 * 204.91477 * 10 9 8 12 12 N 1.46505 * 111.00619 * 81.06358 * 10 9 8 13 13 C 1.36942 * 119.99748 * 86.45058 * 12 10 9 14 14 H 1.07994 * 119.99993 * 0.02562 * 13 12 10 15 15 C 1.38813 * 119.99760 * 180.02562 * 13 12 10 16 16 N 1.31618 * 119.99740 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00051 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47086 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47066 * 120.00061 * 17 15 13 20 20 H 1.48498 * 109.47215 * 240.00133 * 17 15 13 21 21 C 1.55153 * 101.58118 * 322.98987 * 10 9 8 22 22 C 1.47020 * 125.65164 * 183.14009 * 8 6 5 23 23 H 1.09001 * 109.88040 * 59.56077 * 22 8 6 24 24 C 1.53001 * 109.88291 * 298.39845 * 22 8 6 25 25 S 1.75837 * 109.08352 * 0.02562 * 5 4 3 26 26 C 1.33814 * 122.44907 * 84.73795 * 3 2 1 27 27 C 1.50699 * 124.52270 * 0.26988 * 26 3 2 28 28 H 1.09004 * 109.46899 * 300.00005 * 1 2 3 29 29 H 1.08998 * 109.47137 * 59.99929 * 1 2 3 30 30 H 1.08997 * 109.47025 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47156 * 240.00249 * 2 1 3 32 32 H 1.08998 * 109.47137 * 120.00071 * 2 1 3 33 33 H 1.07996 * 123.34975 * 359.69573 * 4 3 2 34 34 H 1.09004 * 110.36748 * 322.93396 * 9 8 6 35 35 H 1.09001 * 110.36667 * 85.13881 * 9 8 6 36 36 H 0.96995 * 119.99763 * 266.46192 * 12 10 9 37 37 H 0.97007 * 119.99756 * 180.02562 * 16 15 13 38 38 H 1.09003 * 110.72168 * 153.86599 * 21 10 9 39 39 H 1.09001 * 110.72131 * 276.95693 * 21 10 9 40 40 H 1.09001 * 109.47297 * 61.45058 * 24 22 8 41 41 H 1.09000 * 109.47402 * 181.45156 * 24 22 8 42 42 H 1.08998 * 109.47169 * 301.45439 * 24 22 8 43 43 H 1.08997 * 109.47692 * 89.99734 * 27 26 3 44 44 H 1.08998 * 109.47286 * 209.99913 * 27 26 3 45 45 H 1.09000 * 109.47380 * 329.99403 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3730 2.0828 -1.1557 5 6 2.7994 3.3630 -0.9397 6 6 3.2260 4.3040 -1.9794 7 8 3.3328 3.9294 -3.1324 8 7 3.5000 5.5840 -1.6585 9 6 3.4819 6.1515 -0.2980 10 6 3.2407 7.6677 -0.5040 11 1 3.6295 8.2429 0.3364 12 7 1.8188 7.9491 -0.7171 13 6 0.9910 8.1439 0.3563 14 1 1.3864 8.0905 1.3599 15 6 -0.3563 8.4100 0.1544 16 7 -0.8383 8.4745 -1.0686 17 14 -1.4854 8.6764 1.6185 18 1 -0.7038 8.5531 2.8752 19 1 -2.0855 10.0325 1.5405 20 1 -2.5642 7.6561 1.6038 21 6 4.0609 7.9415 -1.7922 22 6 3.8726 6.6442 -2.6066 23 1 3.0782 6.7812 -3.3403 24 6 5.1789 6.2754 -3.3125 25 16 2.7544 3.7005 0.7854 26 6 2.1740 2.1323 1.1245 27 6 1.8631 1.6170 2.5060 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.3106 1.6353 -2.1366 34 1 2.6712 5.7141 0.2848 35 1 4.4382 5.9816 0.1966 36 1 1.4637 7.9972 -1.6184 37 1 -1.7798 8.6608 -1.2097 38 1 3.6583 8.7994 -2.3307 39 1 5.1131 8.0968 -1.5537 40 1 5.0400 5.3521 -3.8749 41 1 5.4624 7.0771 -3.9944 42 1 5.9653 6.1341 -2.5710 43 1 2.7544 1.1554 2.9309 44 1 1.5456 2.4450 3.1398 45 1 1.0642 0.8778 2.4469 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989769893.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:32 Heat of formation + Delta-G solvation = -1.728418 kcal Electronic energy + Delta-G solvation = -25667.452842 eV Core-core repulsion = 22197.329080 eV Total energy + Delta-G solvation = -3470.123761 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.89484 -38.67202 -37.14959 -34.01133 -32.94283 -31.81298 -31.39392 -31.14243 -28.48891 -26.98530 -25.60292 -23.90460 -23.87211 -23.42142 -21.36535 -20.11700 -19.15632 -18.03980 -17.66928 -17.22866 -16.10980 -15.86741 -15.07650 -14.81725 -14.53828 -14.13454 -13.94225 -13.88042 -13.62995 -13.35622 -13.30866 -12.91294 -12.84286 -12.61561 -12.35393 -12.25680 -12.04729 -11.91516 -11.75669 -11.52028 -11.33611 -11.18111 -11.12899 -10.99346 -10.90729 -10.71928 -10.34125 -10.11206 -9.99858 -9.77113 -9.62131 -9.07210 -8.54145 -8.20013 -8.10922 -7.08160 -5.85790 -3.16572 0.75578 1.72934 2.15729 2.53187 3.28233 3.37447 3.42579 3.45626 3.55840 4.49867 4.71873 4.82869 4.97441 5.06934 5.08023 5.23233 5.26900 5.30714 5.33875 5.46018 5.46593 5.55734 5.61386 5.65255 5.66277 5.75741 5.79000 5.83994 5.85037 5.91819 5.95239 6.08962 6.12154 6.18976 6.20648 6.36894 6.41232 6.46946 6.53904 6.61200 6.65861 6.78588 7.61343 7.87326 8.31068 8.47988 9.43281 9.97460 10.32122 11.36168 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.009348 B = 0.005474 C = 0.003958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2994.672997 B = 5113.826607 C = 7073.210348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.061 4.061 3 C -0.124 4.124 4 C -0.055 4.055 5 C -0.257 4.257 6 C 0.605 3.395 7 O -0.544 6.544 8 N -0.594 5.594 9 C 0.058 3.942 10 C 0.173 3.827 11 H 0.074 0.926 12 N -0.711 5.711 13 C -0.248 4.248 14 H 0.074 0.926 15 C -0.006 4.006 16 N -0.926 5.926 17 Si 0.905 3.095 18 H -0.279 1.279 19 H -0.290 1.290 20 H -0.291 1.291 21 C -0.137 4.137 22 C 0.141 3.859 23 H 0.076 0.924 24 C -0.160 4.160 25 S 0.239 5.761 26 C -0.228 4.228 27 C -0.083 4.083 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.146 0.854 34 H 0.086 0.914 35 H 0.062 0.938 36 H 0.387 0.613 37 H 0.256 0.744 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.052 0.948 43 H 0.072 0.928 44 H 0.069 0.931 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.962 -11.973 4.189 16.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.100 4.100 3 C -0.136 4.136 4 C -0.089 4.089 5 C -0.378 4.378 6 C 0.394 3.606 7 O -0.425 6.425 8 N -0.326 5.326 9 C -0.070 4.070 10 C 0.061 3.939 11 H 0.092 0.908 12 N -0.350 5.350 13 C -0.379 4.379 14 H 0.091 0.909 15 C -0.203 4.203 16 N -0.574 5.574 17 Si 0.735 3.265 18 H -0.204 1.204 19 H -0.217 1.217 20 H -0.218 1.218 21 C -0.176 4.176 22 C 0.038 3.962 23 H 0.094 0.906 24 C -0.218 4.218 25 S 0.510 5.490 26 C -0.347 4.347 27 C -0.141 4.141 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.164 0.836 34 H 0.104 0.896 35 H 0.080 0.920 36 H 0.221 0.779 37 H 0.066 0.934 38 H 0.105 0.895 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.091 0.909 44 H 0.088 0.912 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 10.249 -10.917 4.648 15.679 hybrid contribution -1.368 -1.171 -0.357 1.836 sum 8.881 -12.088 4.291 15.602 Atomic orbital electron populations 1.21759 0.94975 1.01304 1.02516 1.20195 0.95866 0.91601 1.02348 1.18526 1.05453 0.98205 0.91451 1.20460 0.96976 0.91988 0.99457 1.24439 1.16253 0.99761 0.97327 1.16539 0.77061 0.80187 0.86850 1.90761 1.54681 1.77340 1.19711 1.48220 1.67032 1.07949 1.09429 1.23663 1.00253 0.99972 0.83147 1.21291 0.86945 0.90299 0.95403 0.90807 1.42360 1.01937 1.83637 1.07097 1.19245 0.89765 1.41433 0.87469 0.90852 1.24760 0.97070 1.02155 0.96345 1.69676 1.13739 1.55124 1.18812 0.86166 0.81032 0.77470 0.81797 1.20372 1.21747 1.21818 1.23048 1.00526 0.96428 0.97561 1.21490 0.96711 0.86486 0.91531 0.90601 1.22144 0.96594 1.02533 1.00533 1.83675 1.59638 1.06995 0.98690 1.24572 1.08468 1.01637 1.00000 1.20345 1.02018 1.01341 0.90427 0.92567 0.92386 0.92633 0.91218 0.91322 0.83609 0.89622 0.92029 0.77931 0.93384 0.89534 0.90541 0.91371 0.91916 0.92848 0.90909 0.91215 0.90697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.83 37.16 0.37 -1.17 16 2 C -0.06 -0.65 5.54 -27.88 -0.15 -0.80 16 3 C -0.12 -1.69 5.04 -106.45 -0.54 -2.23 16 4 C -0.06 -0.88 9.79 -40.43 -0.40 -1.27 16 5 C -0.26 -4.49 6.37 -36.79 -0.23 -4.72 16 6 C 0.60 11.77 7.62 -12.90 -0.10 11.67 16 7 O -0.54 -11.70 15.78 5.18 0.08 -11.62 16 8 N -0.59 -10.72 3.06 -164.58 -0.50 -11.23 16 9 C 0.06 0.98 5.29 -2.53 -0.01 0.97 16 10 C 0.17 3.13 3.69 -65.79 -0.24 2.89 16 11 H 0.07 1.26 8.13 -51.93 -0.42 0.84 16 12 N -0.71 -16.70 5.27 -51.35 -0.27 -16.97 16 13 C -0.25 -6.47 9.98 -15.06 -0.15 -6.62 16 14 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 15 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 16 N -0.93 -27.39 13.06 55.49 0.72 -26.66 16 17 Si 0.90 21.68 29.55 -169.99 -5.02 16.66 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 21 C -0.14 -2.07 6.05 -24.90 -0.15 -2.22 16 22 C 0.14 2.33 3.47 -66.95 -0.23 2.10 16 23 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 24 C -0.16 -2.27 9.11 37.16 0.34 -1.94 16 25 S 0.24 3.58 18.50 -107.50 -1.99 1.59 16 26 C -0.23 -3.06 6.28 -35.86 -0.23 -3.28 16 27 C -0.08 -0.85 9.71 36.01 0.35 -0.50 16 28 H 0.06 0.59 7.23 -51.93 -0.38 0.22 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 32 H 0.07 0.63 7.46 -51.93 -0.39 0.25 16 33 H 0.15 2.23 8.06 -52.49 -0.42 1.80 16 34 H 0.09 1.60 4.93 -28.25 -0.14 1.46 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.39 9.97 7.81 -40.82 -0.32 9.65 16 37 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 38 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.08 0.95 7.85 -51.93 -0.41 0.54 16 40 H 0.07 1.10 6.78 -51.93 -0.35 0.75 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.07 0.69 6.38 -51.93 -0.33 0.36 16 LS Contribution 371.95 15.07 5.61 5.61 Total: -1.00 -31.24 371.95 -9.78 -41.02 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -6.93 Total: 9.00 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: -1.48 Total: -7.39 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: -0.05 Total: -54.86 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.08 Total: -11.62 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: 3.58 SS G_CDS: -1.99 Total: 1.59 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.24 -9.78 -41.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989769893.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.292 kcal (2) G-P(sol) polarization free energy of solvation -31.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds