Wall clock time and date at job start Tue Mar 31 2020 13:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50702 * 109.46856 * 2 1 4 4 C 1.37475 * 122.44876 * 265.02320 * 3 2 1 5 5 C 1.36653 * 113.29565 * 179.73420 * 4 3 2 6 6 C 1.46575 * 125.45955 * 180.02562 * 5 4 3 7 7 O 1.21709 * 119.99828 * 353.40881 * 6 5 4 8 8 N 1.34777 * 120.00440 * 173.40606 * 6 5 4 9 9 C 1.47425 * 125.64688 * 3.45194 * 8 6 5 10 10 C 1.54900 * 104.83321 * 204.08946 * 9 8 6 11 11 H 1.09004 * 111.00305 * 204.91477 * 10 9 8 12 12 N 1.46505 * 111.00619 * 81.06358 * 10 9 8 13 13 C 1.36942 * 119.99748 * 86.45058 * 12 10 9 14 14 H 1.07994 * 119.99993 * 0.02562 * 13 12 10 15 15 C 1.38813 * 119.99760 * 180.02562 * 13 12 10 16 16 N 1.31618 * 119.99740 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00051 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47086 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47066 * 120.00061 * 17 15 13 20 20 H 1.48498 * 109.47215 * 240.00133 * 17 15 13 21 21 C 1.55153 * 101.58118 * 322.98987 * 10 9 8 22 22 C 1.47020 * 125.65164 * 183.14009 * 8 6 5 23 23 H 1.09001 * 109.88040 * 59.56077 * 22 8 6 24 24 C 1.53001 * 109.88291 * 298.39845 * 22 8 6 25 25 S 1.75837 * 109.08352 * 0.02562 * 5 4 3 26 26 C 1.33814 * 122.44907 * 84.73795 * 3 2 1 27 27 C 1.50699 * 124.52270 * 0.26988 * 26 3 2 28 28 H 1.09004 * 109.46899 * 300.00005 * 1 2 3 29 29 H 1.08998 * 109.47137 * 59.99929 * 1 2 3 30 30 H 1.08997 * 109.47025 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47156 * 240.00249 * 2 1 3 32 32 H 1.08998 * 109.47137 * 120.00071 * 2 1 3 33 33 H 1.07996 * 123.34975 * 359.69573 * 4 3 2 34 34 H 1.09004 * 110.36748 * 322.93396 * 9 8 6 35 35 H 1.09001 * 110.36667 * 85.13881 * 9 8 6 36 36 H 0.96995 * 119.99763 * 266.46192 * 12 10 9 37 37 H 0.97007 * 119.99756 * 180.02562 * 16 15 13 38 38 H 1.09003 * 110.72168 * 153.86599 * 21 10 9 39 39 H 1.09001 * 110.72131 * 276.95693 * 21 10 9 40 40 H 1.09001 * 109.47297 * 61.45058 * 24 22 8 41 41 H 1.09000 * 109.47402 * 181.45156 * 24 22 8 42 42 H 1.08998 * 109.47169 * 301.45439 * 24 22 8 43 43 H 1.08997 * 109.47692 * 89.99734 * 27 26 3 44 44 H 1.08998 * 109.47286 * 209.99913 * 27 26 3 45 45 H 1.09000 * 109.47380 * 329.99403 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3730 2.0828 -1.1557 5 6 2.7994 3.3630 -0.9397 6 6 3.2260 4.3040 -1.9794 7 8 3.3328 3.9294 -3.1324 8 7 3.5000 5.5840 -1.6585 9 6 3.4819 6.1515 -0.2980 10 6 3.2407 7.6677 -0.5040 11 1 3.6295 8.2429 0.3364 12 7 1.8188 7.9491 -0.7171 13 6 0.9910 8.1439 0.3563 14 1 1.3864 8.0905 1.3599 15 6 -0.3563 8.4100 0.1544 16 7 -0.8383 8.4745 -1.0686 17 14 -1.4854 8.6764 1.6185 18 1 -0.7038 8.5531 2.8752 19 1 -2.0855 10.0325 1.5405 20 1 -2.5642 7.6561 1.6038 21 6 4.0609 7.9415 -1.7922 22 6 3.8726 6.6442 -2.6066 23 1 3.0782 6.7812 -3.3403 24 6 5.1789 6.2754 -3.3125 25 16 2.7544 3.7005 0.7854 26 6 2.1740 2.1323 1.1245 27 6 1.8631 1.6170 2.5060 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.3106 1.6353 -2.1366 34 1 2.6712 5.7141 0.2848 35 1 4.4382 5.9816 0.1966 36 1 1.4637 7.9972 -1.6184 37 1 -1.7798 8.6608 -1.2097 38 1 3.6583 8.7994 -2.3307 39 1 5.1131 8.0968 -1.5537 40 1 5.0400 5.3521 -3.8749 41 1 5.4624 7.0771 -3.9944 42 1 5.9653 6.1341 -2.5710 43 1 2.7544 1.1554 2.9309 44 1 1.5456 2.4450 3.1398 45 1 1.0642 0.8778 2.4469 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989769893.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:31 Heat of formation + Delta-G solvation = -19.985127 kcal Electronic energy + Delta-G solvation = -25668.244512 eV Core-core repulsion = 22197.329080 eV Total energy + Delta-G solvation = -3470.915432 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.29839 -39.80946 -38.59146 -35.81490 -34.06278 -33.20783 -32.87742 -32.19642 -30.16563 -28.08352 -26.88917 -25.75253 -24.81482 -24.70500 -22.66941 -21.48968 -20.41434 -19.30606 -19.23097 -18.82963 -17.57905 -17.02245 -16.50384 -16.45755 -15.76920 -15.50798 -15.37765 -15.03008 -14.90090 -14.86693 -14.50955 -14.26765 -13.95052 -13.59929 -13.55609 -13.36357 -13.31331 -13.15239 -12.92550 -12.88725 -12.75081 -12.58375 -12.45236 -12.31315 -12.19590 -12.06903 -11.84047 -11.66093 -11.54487 -11.31490 -11.08939 -10.92871 -9.89983 -9.43624 -9.30005 -8.99508 -7.93504 -5.22692 -0.46187 0.53943 1.00255 1.35266 1.48027 1.48411 1.58046 1.91719 2.17547 2.56296 3.35811 3.44007 3.80654 3.83522 3.86885 3.91059 4.08448 4.10587 4.17275 4.33518 4.38776 4.43635 4.51026 4.61712 4.63472 4.68164 4.71174 4.71430 4.73700 4.88399 4.92270 4.96610 5.06913 5.07863 5.12371 5.15394 5.19417 5.32957 5.33632 5.44345 5.48011 5.56150 5.57407 6.27043 6.45406 7.03012 7.34094 8.07520 8.30013 9.30262 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.009348 B = 0.005474 C = 0.003958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2994.672997 B = 5113.826607 C = 7073.210348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.058 4.058 3 C -0.134 4.134 4 C -0.056 4.056 5 C -0.299 4.299 6 C 0.594 3.406 7 O -0.581 6.581 8 N -0.597 5.597 9 C 0.062 3.938 10 C 0.162 3.838 11 H 0.094 0.906 12 N -0.725 5.725 13 C -0.232 4.232 14 H 0.088 0.912 15 C -0.075 4.075 16 N -0.972 5.972 17 Si 0.964 3.036 18 H -0.256 1.256 19 H -0.297 1.297 20 H -0.302 1.302 21 C -0.120 4.120 22 C 0.133 3.867 23 H 0.043 0.957 24 C -0.148 4.148 25 S 0.244 5.756 26 C -0.216 4.216 27 C -0.085 4.085 28 H 0.054 0.946 29 H 0.037 0.963 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.141 0.859 34 H 0.072 0.928 35 H 0.097 0.903 36 H 0.370 0.630 37 H 0.248 0.752 38 H 0.082 0.918 39 H 0.117 0.883 40 H 0.042 0.958 41 H 0.086 0.914 42 H 0.070 0.930 43 H 0.096 0.904 44 H 0.073 0.927 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.558 -12.915 6.962 18.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.097 4.097 3 C -0.146 4.146 4 C -0.091 4.091 5 C -0.419 4.419 6 C 0.384 3.616 7 O -0.464 6.464 8 N -0.328 5.328 9 C -0.064 4.064 10 C 0.052 3.948 11 H 0.112 0.888 12 N -0.363 5.363 13 C -0.363 4.363 14 H 0.106 0.894 15 C -0.267 4.267 16 N -0.623 5.623 17 Si 0.794 3.206 18 H -0.180 1.180 19 H -0.224 1.224 20 H -0.230 1.230 21 C -0.159 4.159 22 C 0.031 3.969 23 H 0.061 0.939 24 C -0.206 4.206 25 S 0.515 5.485 26 C -0.336 4.336 27 C -0.143 4.143 28 H 0.073 0.927 29 H 0.056 0.944 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.110 0.890 33 H 0.158 0.842 34 H 0.089 0.911 35 H 0.115 0.885 36 H 0.202 0.798 37 H 0.056 0.944 38 H 0.100 0.900 39 H 0.135 0.865 40 H 0.061 0.939 41 H 0.105 0.895 42 H 0.089 0.911 43 H 0.114 0.886 44 H 0.092 0.908 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 11.914 -11.849 7.472 18.389 hybrid contribution -1.791 -0.953 -1.194 2.353 sum 10.123 -12.801 6.278 17.486 Atomic orbital electron populations 1.21754 0.94770 1.02461 1.01440 1.20272 0.95901 0.89734 1.03795 1.18785 1.05457 0.99763 0.90569 1.20690 0.96296 0.91807 1.00287 1.24426 1.18819 1.00221 0.98466 1.16944 0.76756 0.80899 0.86976 1.90717 1.56414 1.78117 1.21187 1.48344 1.66506 1.07796 1.10166 1.23629 1.01592 0.98487 0.82737 1.21629 0.84453 0.91111 0.97633 0.88804 1.42568 1.04141 1.83920 1.05705 1.19696 0.89960 1.38049 0.88642 0.89426 1.25521 0.98900 1.03822 0.98436 1.69844 1.13352 1.58091 1.20972 0.85200 0.79037 0.76408 0.79963 1.18004 1.22412 1.22990 1.22997 1.02223 0.95159 0.95483 1.21617 0.96900 0.87128 0.91305 0.93900 1.22035 0.95555 1.02107 1.00855 1.83441 1.59956 1.08380 0.96746 1.25016 1.06529 1.00385 1.01628 1.20522 1.03609 1.01944 0.88260 0.92734 0.94370 0.90380 0.90637 0.89035 0.84157 0.91098 0.88514 0.79849 0.94360 0.89961 0.86491 0.93906 0.89499 0.91137 0.88567 0.90761 0.89198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 9.83 71.98 0.71 -2.05 16 2 C -0.06 -1.10 5.54 29.85 0.17 -0.94 16 3 C -0.13 -3.50 5.04 -21.05 -0.11 -3.61 16 4 C -0.06 -1.81 9.79 21.72 0.21 -1.60 16 5 C -0.30 -10.63 6.37 24.07 0.15 -10.47 16 6 C 0.59 23.90 7.62 86.42 0.66 24.56 16 7 O -0.58 -26.34 15.78 -4.38 -0.07 -26.41 16 8 N -0.60 -21.63 3.06 -792.82 -2.43 -24.06 16 9 C 0.06 2.03 5.29 86.85 0.46 2.49 16 10 C 0.16 5.58 3.69 46.38 0.17 5.75 16 11 H 0.09 2.90 8.13 -2.38 -0.02 2.88 16 12 N -0.73 -34.09 5.27 -316.38 -1.67 -35.76 16 13 C -0.23 -11.96 9.98 84.03 0.84 -11.12 16 14 H 0.09 4.19 7.83 -2.91 -0.02 4.17 16 15 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 16 N -0.97 -59.31 13.06 21.65 0.28 -59.02 16 17 Si 0.96 44.80 29.55 68.60 2.03 46.83 16 18 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 19 H -0.30 -13.93 7.11 99.48 0.71 -13.23 16 20 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 21 C -0.12 -3.40 6.05 31.78 0.19 -3.21 16 22 C 0.13 4.41 3.47 45.34 0.16 4.56 16 23 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 24 C -0.15 -4.05 9.11 71.98 0.66 -3.39 16 25 S 0.24 7.05 18.50 -56.49 -1.05 6.00 16 26 C -0.22 -5.36 6.28 24.68 0.15 -5.21 16 27 C -0.09 -1.44 9.71 71.24 0.69 -0.75 16 28 H 0.05 1.03 7.23 -2.39 -0.02 1.02 16 29 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.07 1.36 8.10 -2.39 -0.02 1.34 16 32 H 0.09 1.35 7.46 -2.39 -0.02 1.33 16 33 H 0.14 4.51 8.06 -2.91 -0.02 4.48 16 34 H 0.07 2.58 4.93 -17.44 -0.09 2.50 16 35 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 36 H 0.37 19.67 7.81 -92.71 -0.72 18.94 16 37 H 0.25 14.82 8.31 -92.70 -0.77 14.05 16 38 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 39 H 0.12 2.41 7.85 -2.39 -0.02 2.39 16 40 H 0.04 1.40 6.78 -2.39 -0.02 1.38 16 41 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.07 1.68 8.14 -2.39 -0.02 1.67 16 43 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.09 1.30 6.38 -2.39 -0.02 1.29 16 Total: -1.00 -70.73 371.95 2.87 -67.86 By element: Atomic # 1 Polarization: 33.03 SS G_CDS: 0.19 Total: 33.23 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: 5.58 Total: -8.67 kcal Atomic # 7 Polarization: -115.03 SS G_CDS: -3.81 Total: -118.84 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: -0.07 Total: -26.41 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Atomic # 16 Polarization: 7.05 SS G_CDS: -1.05 Total: 6.00 kcal Total: -70.73 2.87 -67.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989769893.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.875 kcal (2) G-P(sol) polarization free energy of solvation -70.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds