Wall clock time and date at job start Tue Mar 31 2020 13:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50698 * 109.47302 * 2 1 4 4 C 1.33810 * 124.52862 * 89.99421 * 3 2 1 5 5 C 1.37467 * 115.10703 * 179.97438 * 4 3 2 6 6 C 1.36650 * 113.29517 * 0.02562 * 5 4 3 7 7 C 1.46585 * 125.45951 * 179.97438 * 6 5 4 8 8 O 1.21700 * 119.99959 * 0.02562 * 7 6 5 9 9 N 1.34776 * 119.99954 * 179.97438 * 7 6 5 10 10 C 1.46502 * 119.99879 * 179.97438 * 9 7 6 11 11 H 1.08999 * 109.49684 * 325.06929 * 10 9 7 12 12 C 1.53105 * 109.48863 * 85.14924 * 10 9 7 13 13 C 1.53044 * 109.50464 * 58.61146 * 12 10 9 14 14 C 1.53190 * 109.33467 * 61.34808 * 13 12 10 15 15 N 1.46926 * 108.77921 * 305.34788 * 14 13 12 16 16 C 1.36932 * 120.63380 * 233.63289 * 15 14 13 17 17 H 1.07996 * 120.00342 * 150.16151 * 16 15 14 18 18 C 1.38819 * 119.99821 * 330.16292 * 16 15 14 19 19 N 1.31619 * 119.99679 * 344.48818 * 18 16 15 20 20 Si 1.86797 * 120.00224 * 164.48959 * 18 16 15 21 21 H 1.48503 * 109.47079 * 89.99816 * 20 18 16 22 22 H 1.48498 * 109.47215 * 210.00127 * 20 18 16 23 23 H 1.48499 * 109.46927 * 330.00030 * 20 18 16 24 24 C 1.46930 * 118.73556 * 53.60978 * 15 14 13 25 25 H 1.09003 * 109.58642 * 66.17665 * 24 15 14 26 26 C 1.52998 * 109.58473 * 186.60263 * 24 15 14 27 27 S 1.70623 * 124.51918 * 270.26827 * 3 2 1 28 28 H 1.08996 * 109.47200 * 300.00790 * 1 2 3 29 29 H 1.09001 * 109.46754 * 60.00270 * 1 2 3 30 30 H 1.08995 * 109.47022 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47200 * 239.99209 * 2 1 3 32 32 H 1.09001 * 109.46754 * 119.99730 * 2 1 3 33 33 H 1.08004 * 122.44476 * 359.97438 * 4 3 2 34 34 H 1.08004 * 123.35434 * 180.02562 * 5 4 3 35 35 H 0.96994 * 119.99837 * 0.02562 * 9 7 6 36 36 H 1.09006 * 109.50031 * 298.58579 * 12 10 9 37 37 H 1.08991 * 109.45235 * 178.60801 * 12 10 9 38 38 H 1.09004 * 109.49712 * 301.38446 * 13 12 10 39 39 H 1.08993 * 109.49678 * 181.31927 * 13 12 10 40 40 H 1.09002 * 109.58694 * 65.13728 * 14 13 12 41 41 H 1.09003 * 109.58491 * 185.55774 * 14 13 12 42 42 H 0.97009 * 119.99606 * 180.02562 * 19 18 16 43 43 H 1.09005 * 109.47133 * 59.99913 * 26 24 15 44 44 H 1.09005 * 109.47222 * 179.97438 * 26 24 15 45 45 H 1.08998 * 109.47341 * 300.00158 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2852 2.1359 1.1024 5 6 2.7378 3.4143 0.8774 6 6 2.8470 3.7232 -0.4493 7 6 3.3015 5.0082 -0.9886 8 8 3.6198 5.9071 -0.2324 9 7 3.3677 5.1940 -2.3218 10 6 3.8213 6.4785 -2.8608 11 1 3.4819 7.2856 -2.2116 12 6 5.3506 6.4901 -2.9345 13 6 5.8283 5.3366 -3.8196 14 6 5.2740 5.5209 -5.2358 15 7 3.8131 5.6560 -5.1581 16 6 2.9969 4.8468 -5.9025 17 1 2.0138 4.5889 -5.5376 18 6 3.4334 4.3579 -7.1263 19 7 4.4796 4.8974 -7.7152 20 14 2.5360 2.9344 -7.9371 21 1 1.4592 3.4625 -8.8129 22 1 3.4941 2.1448 -8.7518 23 1 1.9411 2.0641 -6.8912 24 6 3.2444 6.6757 -4.2661 25 1 3.5059 7.6685 -4.6324 26 6 1.7224 6.5267 -4.2213 27 16 2.3485 2.3346 -1.4058 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.1438 1.7378 2.0964 34 1 2.9827 4.1057 1.6701 35 1 3.1144 4.4774 -2.9245 36 1 5.7640 6.3743 -1.9325 37 1 5.6863 7.4363 -3.3585 38 1 5.4718 4.3916 -3.4096 39 1 6.9176 5.3308 -3.8531 40 1 5.7010 6.4195 -5.6812 41 1 5.5289 4.6528 -5.8438 42 1 4.7843 4.5559 -8.5705 43 1 1.4651 5.5352 -3.8487 44 1 1.3025 7.2837 -3.5588 45 1 1.3151 6.6549 -5.2242 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993566115.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:30 Heat of formation + Delta-G solvation = 2.668072 kcal Electronic energy + Delta-G solvation = -25875.196781 eV Core-core repulsion = 22405.263666 eV Total energy + Delta-G solvation = -3469.933115 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.77826 -38.25273 -37.28429 -33.95576 -33.84818 -32.43301 -31.72334 -29.75949 -28.51204 -26.34411 -25.25916 -24.95285 -22.62102 -22.24241 -21.22555 -20.72064 -19.14551 -18.71402 -17.81541 -16.46010 -16.08817 -15.52033 -15.05402 -14.89491 -14.71803 -14.35494 -14.11049 -13.87243 -13.57303 -13.44631 -13.05980 -12.99442 -12.88846 -12.58516 -12.37479 -12.00621 -11.85814 -11.67915 -11.30002 -11.28130 -11.24818 -11.00127 -10.78140 -10.70733 -10.63986 -10.53574 -10.13740 -10.03081 -9.74013 -9.65370 -9.32023 -8.76290 -8.58532 -8.53555 -8.42181 -6.69218 -5.83731 -3.29142 0.55752 1.49200 1.92863 2.42170 3.32459 3.40326 3.40750 3.47597 3.57479 4.42989 4.49868 4.80518 5.02671 5.09913 5.20387 5.29318 5.31288 5.36857 5.49645 5.56027 5.59159 5.59984 5.70536 5.73795 5.93435 5.95049 5.98219 6.10268 6.15064 6.21190 6.32789 6.36190 6.40847 6.51964 6.65315 6.66909 6.76523 6.92581 6.94800 7.07440 7.36245 7.63881 7.75636 7.94815 8.39728 8.53586 9.15693 9.78603 10.36297 11.24302 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.011542 B = 0.004925 C = 0.003823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2425.381375 B = 5684.413505 C = 7322.043658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.055 4.055 3 C -0.202 4.202 4 C -0.155 4.155 5 C -0.062 4.062 6 C -0.261 4.261 7 C 0.584 3.416 8 O -0.546 6.546 9 N -0.695 5.695 10 C 0.134 3.866 11 H 0.078 0.922 12 C -0.121 4.121 13 C -0.141 4.141 14 C 0.172 3.828 15 N -0.586 5.586 16 C -0.257 4.257 17 H 0.069 0.931 18 C 0.008 3.992 19 N -0.898 5.898 20 Si 0.897 3.103 21 H -0.287 1.287 22 H -0.290 1.290 23 H -0.278 1.278 24 C 0.159 3.841 25 H 0.042 0.958 26 C -0.136 4.136 27 S 0.219 5.781 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.140 0.860 34 H 0.150 0.850 35 H 0.406 0.594 36 H 0.051 0.949 37 H 0.064 0.936 38 H 0.052 0.948 39 H 0.048 0.952 40 H 0.019 0.981 41 H 0.086 0.914 42 H 0.254 0.746 43 H 0.052 0.948 44 H 0.040 0.960 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.530 -6.768 14.072 16.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.094 4.094 3 C -0.322 4.322 4 C -0.186 4.186 5 C -0.095 4.095 6 C -0.382 4.382 7 C 0.369 3.631 8 O -0.426 6.426 9 N -0.346 5.346 10 C 0.028 3.972 11 H 0.096 0.904 12 C -0.160 4.160 13 C -0.180 4.180 14 C 0.046 3.954 15 N -0.310 5.310 16 C -0.387 4.387 17 H 0.087 0.913 18 C -0.191 4.191 19 N -0.542 5.542 20 Si 0.727 3.273 21 H -0.214 1.214 22 H -0.216 1.216 23 H -0.204 1.204 24 C 0.051 3.949 25 H 0.059 0.941 26 C -0.194 4.194 27 S 0.487 5.513 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.100 0.900 33 H 0.157 0.843 34 H 0.167 0.833 35 H 0.243 0.757 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.037 0.963 41 H 0.104 0.896 42 H 0.064 0.936 43 H 0.071 0.929 44 H 0.059 0.941 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.341 -6.451 12.810 14.985 hybrid contribution -0.305 -0.798 0.789 1.163 sum -4.646 -7.249 13.599 16.096 Atomic orbital electron populations 1.21805 0.94148 1.02054 1.02654 1.20133 0.96320 0.89548 1.03417 1.24307 1.07518 1.02121 0.98264 1.19885 1.05180 0.94198 0.99318 1.20673 0.97474 0.96184 0.95156 1.24767 1.15577 0.99766 0.98045 1.16984 0.77888 0.85425 0.82800 1.90772 1.50694 1.42797 1.58335 1.45910 1.65787 1.17453 1.05429 1.21611 0.94413 0.84484 0.96710 0.90370 1.21787 0.95254 0.99579 0.99362 1.22150 0.98771 0.97607 0.99499 1.20792 0.82699 1.00921 0.90950 1.44163 1.01671 1.37079 1.48088 1.19115 0.99440 1.22190 0.97921 0.91303 1.25093 0.98325 0.99908 0.95813 1.70026 1.27012 1.40864 1.16292 0.86392 0.78981 0.82603 0.79363 1.21409 1.21616 1.20360 1.20734 0.92672 0.93343 0.88110 0.94083 1.21793 0.95581 1.00429 1.01597 1.83484 1.58829 1.02318 1.06628 0.92263 0.92230 0.91976 0.90568 0.90004 0.84266 0.83277 0.75699 0.93042 0.91753 0.92952 0.93366 0.96305 0.89621 0.93635 0.92944 0.94118 0.91607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.90 37.16 0.37 -0.78 16 2 C -0.06 -0.47 6.36 -27.88 -0.18 -0.64 16 3 C -0.20 -2.25 5.53 -35.86 -0.20 -2.44 16 4 C -0.15 -1.72 9.99 -41.42 -0.41 -2.14 16 5 C -0.06 -0.82 10.01 -40.44 -0.40 -1.22 16 6 C -0.26 -3.95 6.45 -36.79 -0.24 -4.19 16 7 C 0.58 10.34 7.75 -12.89 -0.10 10.24 16 8 O -0.55 -10.98 16.50 5.19 0.09 -10.89 16 9 N -0.70 -12.30 3.45 -54.99 -0.19 -12.49 16 10 C 0.13 2.44 2.33 -67.78 -0.16 2.28 16 11 H 0.08 1.42 7.58 -51.93 -0.39 1.03 16 12 C -0.12 -2.18 5.58 -26.65 -0.15 -2.33 16 13 C -0.14 -2.70 5.93 -26.61 -0.16 -2.86 16 14 C 0.17 3.90 5.28 -3.71 -0.02 3.88 16 15 N -0.59 -13.42 2.64 -164.77 -0.44 -13.86 16 16 C -0.26 -6.40 8.57 -15.06 -0.13 -6.53 16 17 H 0.07 1.66 6.24 -52.49 -0.33 1.34 16 18 C 0.01 0.21 4.94 -17.43 -0.09 0.12 16 19 N -0.90 -24.84 11.23 55.49 0.62 -24.22 16 20 Si 0.90 20.55 29.58 -169.99 -5.03 15.53 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 24 C 0.16 3.14 3.20 -67.60 -0.22 2.92 16 25 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 26 C -0.14 -2.49 7.74 37.16 0.29 -2.20 16 27 S 0.22 2.88 22.10 -107.50 -2.38 0.51 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.14 1.21 8.06 -52.48 -0.42 0.78 16 34 H 0.15 1.88 8.06 -52.48 -0.42 1.46 16 35 H 0.41 7.36 6.88 -40.82 -0.28 7.08 16 36 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.05 1.03 7.53 -51.93 -0.39 0.63 16 39 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.09 2.18 6.15 -51.93 -0.32 1.86 16 42 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 43 H 0.05 0.95 6.39 -51.93 -0.33 0.62 16 44 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.06 1.28 7.63 -51.93 -0.40 0.88 16 LS Contribution 368.77 15.07 5.56 5.56 Total: -1.00 -28.59 368.77 -10.63 -39.22 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -7.07 Total: 6.53 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: -1.79 Total: -5.88 kcal Atomic # 7 Polarization: -50.57 SS G_CDS: 0.00 Total: -50.57 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.09 Total: -10.89 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.03 Total: 15.53 kcal Atomic # 16 Polarization: 2.88 SS G_CDS: -2.38 Total: 0.51 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -28.59 -10.63 -39.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993566115.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.887 kcal (2) G-P(sol) polarization free energy of solvation -28.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds