Wall clock time and date at job start Tue Mar 31 2020 13:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50698 * 109.47302 * 2 1 4 4 C 1.33810 * 124.52862 * 89.99421 * 3 2 1 5 5 C 1.37467 * 115.10703 * 179.97438 * 4 3 2 6 6 C 1.36650 * 113.29517 * 0.02562 * 5 4 3 7 7 C 1.46585 * 125.45951 * 179.97438 * 6 5 4 8 8 O 1.21700 * 119.99959 * 0.02562 * 7 6 5 9 9 N 1.34776 * 119.99954 * 179.97438 * 7 6 5 10 10 C 1.46502 * 119.99879 * 179.97438 * 9 7 6 11 11 H 1.08999 * 109.49684 * 325.06929 * 10 9 7 12 12 C 1.53105 * 109.48863 * 85.14924 * 10 9 7 13 13 C 1.53044 * 109.50464 * 58.61146 * 12 10 9 14 14 C 1.53190 * 109.33467 * 61.34808 * 13 12 10 15 15 N 1.46926 * 108.77921 * 305.34788 * 14 13 12 16 16 C 1.36932 * 120.63380 * 233.63289 * 15 14 13 17 17 H 1.07996 * 120.00342 * 150.16151 * 16 15 14 18 18 C 1.38819 * 119.99821 * 330.16292 * 16 15 14 19 19 N 1.31619 * 119.99679 * 344.48818 * 18 16 15 20 20 Si 1.86797 * 120.00224 * 164.48959 * 18 16 15 21 21 H 1.48503 * 109.47079 * 89.99816 * 20 18 16 22 22 H 1.48498 * 109.47215 * 210.00127 * 20 18 16 23 23 H 1.48499 * 109.46927 * 330.00030 * 20 18 16 24 24 C 1.46930 * 118.73556 * 53.60978 * 15 14 13 25 25 H 1.09003 * 109.58642 * 66.17665 * 24 15 14 26 26 C 1.52998 * 109.58473 * 186.60263 * 24 15 14 27 27 S 1.70623 * 124.51918 * 270.26827 * 3 2 1 28 28 H 1.08996 * 109.47200 * 300.00790 * 1 2 3 29 29 H 1.09001 * 109.46754 * 60.00270 * 1 2 3 30 30 H 1.08995 * 109.47022 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47200 * 239.99209 * 2 1 3 32 32 H 1.09001 * 109.46754 * 119.99730 * 2 1 3 33 33 H 1.08004 * 122.44476 * 359.97438 * 4 3 2 34 34 H 1.08004 * 123.35434 * 180.02562 * 5 4 3 35 35 H 0.96994 * 119.99837 * 0.02562 * 9 7 6 36 36 H 1.09006 * 109.50031 * 298.58579 * 12 10 9 37 37 H 1.08991 * 109.45235 * 178.60801 * 12 10 9 38 38 H 1.09004 * 109.49712 * 301.38446 * 13 12 10 39 39 H 1.08993 * 109.49678 * 181.31927 * 13 12 10 40 40 H 1.09002 * 109.58694 * 65.13728 * 14 13 12 41 41 H 1.09003 * 109.58491 * 185.55774 * 14 13 12 42 42 H 0.97009 * 119.99606 * 180.02562 * 19 18 16 43 43 H 1.09005 * 109.47133 * 59.99913 * 26 24 15 44 44 H 1.09005 * 109.47222 * 179.97438 * 26 24 15 45 45 H 1.08998 * 109.47341 * 300.00158 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2852 2.1359 1.1024 5 6 2.7378 3.4143 0.8774 6 6 2.8470 3.7232 -0.4493 7 6 3.3015 5.0082 -0.9886 8 8 3.6198 5.9071 -0.2324 9 7 3.3677 5.1940 -2.3218 10 6 3.8213 6.4785 -2.8608 11 1 3.4819 7.2856 -2.2116 12 6 5.3506 6.4901 -2.9345 13 6 5.8283 5.3366 -3.8196 14 6 5.2740 5.5209 -5.2358 15 7 3.8131 5.6560 -5.1581 16 6 2.9969 4.8468 -5.9025 17 1 2.0138 4.5889 -5.5376 18 6 3.4334 4.3579 -7.1263 19 7 4.4796 4.8974 -7.7152 20 14 2.5360 2.9344 -7.9371 21 1 1.4592 3.4625 -8.8129 22 1 3.4941 2.1448 -8.7518 23 1 1.9411 2.0641 -6.8912 24 6 3.2444 6.6757 -4.2661 25 1 3.5059 7.6685 -4.6324 26 6 1.7224 6.5267 -4.2213 27 16 2.3485 2.3346 -1.4058 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.1438 1.7378 2.0964 34 1 2.9827 4.1057 1.6701 35 1 3.1144 4.4774 -2.9245 36 1 5.7640 6.3743 -1.9325 37 1 5.6863 7.4363 -3.3585 38 1 5.4718 4.3916 -3.4096 39 1 6.9176 5.3308 -3.8531 40 1 5.7010 6.4195 -5.6812 41 1 5.5289 4.6528 -5.8438 42 1 4.7843 4.5559 -8.5705 43 1 1.4651 5.5352 -3.8487 44 1 1.3025 7.2837 -3.5588 45 1 1.3151 6.6549 -5.2242 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993566115.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:29 Heat of formation + Delta-G solvation = -11.451543 kcal Electronic energy + Delta-G solvation = -25875.809054 eV Core-core repulsion = 22405.263666 eV Total energy + Delta-G solvation = -3470.545388 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.20299 -39.49236 -38.57992 -35.62557 -34.66678 -34.03954 -33.41363 -31.37384 -29.60034 -27.89553 -26.86882 -26.15620 -23.95815 -23.23808 -22.64530 -22.31864 -20.43069 -20.17657 -18.92717 -18.25059 -17.17895 -17.11254 -16.53582 -16.31051 -16.00900 -15.70280 -15.28884 -15.13388 -14.92009 -14.79483 -14.58266 -14.30724 -14.23940 -13.79326 -13.57838 -13.26038 -12.98636 -12.90084 -12.79621 -12.72595 -12.43017 -12.41096 -12.34455 -12.19394 -12.03702 -11.93141 -11.69660 -11.63655 -11.40179 -11.11211 -11.03406 -10.49087 -10.07336 -9.61830 -9.54520 -8.60213 -7.81067 -5.27770 -0.47543 0.48380 0.95573 1.42307 1.49515 1.52293 1.59751 2.19986 2.24112 2.54733 3.35486 3.58315 3.72080 3.82789 4.03295 4.05174 4.15634 4.18701 4.36253 4.37439 4.41250 4.50094 4.54276 4.64469 4.74159 4.80949 4.92697 4.93533 4.97111 5.01359 5.04473 5.10149 5.15130 5.19778 5.22578 5.32606 5.35216 5.42868 5.45833 5.53286 5.59104 5.74523 5.79210 6.44972 6.54853 7.15114 7.20653 7.89603 8.43601 9.25652 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.011542 B = 0.004925 C = 0.003823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2425.381375 B = 5684.413505 C = 7322.043658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.057 4.057 3 C -0.182 4.182 4 C -0.158 4.158 5 C -0.050 4.050 6 C -0.298 4.298 7 C 0.585 3.415 8 O -0.576 6.576 9 N -0.695 5.695 10 C 0.141 3.859 11 H 0.083 0.917 12 C -0.115 4.115 13 C -0.127 4.127 14 C 0.180 3.820 15 N -0.597 5.597 16 C -0.249 4.249 17 H 0.077 0.923 18 C -0.046 4.046 19 N -0.934 5.934 20 Si 0.954 3.046 21 H -0.290 1.290 22 H -0.299 1.299 23 H -0.264 1.264 24 C 0.156 3.844 25 H 0.036 0.964 26 C -0.128 4.128 27 S 0.200 5.800 28 H 0.061 0.939 29 H 0.046 0.954 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.104 0.896 33 H 0.171 0.829 34 H 0.153 0.847 35 H 0.404 0.596 36 H 0.055 0.945 37 H 0.071 0.929 38 H 0.047 0.953 39 H 0.063 0.937 40 H -0.002 1.002 41 H 0.055 0.945 42 H 0.246 0.754 43 H 0.051 0.949 44 H 0.064 0.936 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.737 -8.399 16.243 19.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.096 4.096 3 C -0.303 4.303 4 C -0.188 4.188 5 C -0.085 4.085 6 C -0.418 4.418 7 C 0.373 3.627 8 O -0.459 6.459 9 N -0.344 5.344 10 C 0.035 3.965 11 H 0.101 0.899 12 C -0.154 4.154 13 C -0.166 4.166 14 C 0.055 3.945 15 N -0.321 5.321 16 C -0.379 4.379 17 H 0.095 0.905 18 C -0.241 4.241 19 N -0.580 5.580 20 Si 0.783 3.217 21 H -0.217 1.217 22 H -0.226 1.226 23 H -0.188 1.188 24 C 0.050 3.950 25 H 0.054 0.946 26 C -0.186 4.186 27 S 0.468 5.532 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.123 0.877 33 H 0.188 0.812 34 H 0.170 0.830 35 H 0.241 0.759 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.066 0.934 39 H 0.082 0.918 40 H 0.016 0.984 41 H 0.074 0.926 42 H 0.056 0.944 43 H 0.070 0.930 44 H 0.083 0.917 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.570 -8.084 15.004 17.930 hybrid contribution 0.032 -0.314 0.204 0.376 sum -5.538 -8.398 15.208 18.234 Atomic orbital electron populations 1.21805 0.93430 1.03111 1.02203 1.20308 0.96809 0.87791 1.04725 1.24706 1.05541 1.02981 0.97027 1.20134 1.04697 0.93196 1.00766 1.20936 0.95936 0.97092 0.94499 1.24552 1.18669 0.99545 0.99039 1.17275 0.77061 0.86073 0.82306 1.90742 1.52236 1.44118 1.58791 1.45865 1.65918 1.17018 1.05646 1.21441 0.94404 0.85145 0.95525 0.89902 1.21737 0.95160 0.99346 0.99151 1.21964 0.99571 0.97911 0.97175 1.20567 0.82987 0.98515 0.92459 1.44334 1.01651 1.37873 1.48213 1.19426 0.99571 1.21388 0.97523 0.90529 1.25753 0.99359 1.02271 0.96732 1.70178 1.28858 1.42411 1.16512 0.85478 0.77563 0.80168 0.78506 1.21679 1.22591 1.18844 1.20854 0.93758 0.92164 0.88255 0.94608 1.21709 0.94316 1.01270 1.01299 1.83530 1.59343 1.02303 1.07985 0.91982 0.93442 0.90233 0.90224 0.87729 0.81171 0.82963 0.75929 0.92660 0.90992 0.93385 0.91791 0.98411 0.92639 0.94439 0.92973 0.91682 0.93040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.90 71.98 0.71 -1.12 16 2 C -0.06 -0.78 6.36 29.85 0.19 -0.59 16 3 C -0.18 -3.55 5.53 24.68 0.14 -3.42 16 4 C -0.16 -3.03 9.99 21.08 0.21 -2.82 16 5 C -0.05 -1.25 10.01 21.72 0.22 -1.03 16 6 C -0.30 -8.74 6.45 24.08 0.16 -8.58 16 7 C 0.59 20.42 7.75 86.42 0.67 21.09 16 8 O -0.58 -22.90 16.50 -4.35 -0.07 -22.97 16 9 N -0.69 -24.21 3.45 -446.12 -1.54 -25.75 16 10 C 0.14 5.04 2.33 45.09 0.10 5.14 16 11 H 0.08 2.93 7.58 -2.39 -0.02 2.91 16 12 C -0.12 -4.07 5.58 30.64 0.17 -3.89 16 13 C -0.13 -4.84 5.93 30.67 0.18 -4.66 16 14 C 0.18 8.37 5.28 86.36 0.46 8.83 16 15 N -0.60 -27.57 2.64 -675.22 -1.78 -29.35 16 16 C -0.25 -12.43 8.57 84.04 0.72 -11.71 16 17 H 0.08 3.66 6.24 -2.91 -0.02 3.64 16 18 C -0.05 -2.40 4.94 84.86 0.42 -1.98 16 19 N -0.93 -53.10 11.23 21.65 0.24 -52.86 16 20 Si 0.95 42.63 29.58 68.60 2.03 44.66 16 21 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 22 H -0.30 -13.71 7.11 99.48 0.71 -13.00 16 23 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 24 C 0.16 6.13 3.20 44.97 0.14 6.28 16 25 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 26 C -0.13 -4.57 7.74 71.98 0.56 -4.01 16 27 S 0.20 5.01 22.10 -56.49 -1.25 3.77 16 28 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.08 1.06 8.14 -2.39 -0.02 1.05 16 32 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.17 2.21 8.06 -2.91 -0.02 2.18 16 34 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 35 H 0.40 14.51 6.88 -92.71 -0.64 13.87 16 36 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 37 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 38 H 0.05 1.87 7.53 -2.39 -0.02 1.85 16 39 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 41 H 0.06 2.92 6.15 -2.39 -0.01 2.90 16 42 H 0.25 13.78 8.31 -92.70 -0.77 13.01 16 43 H 0.05 1.84 6.39 -2.38 -0.02 1.83 16 44 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 45 H 0.05 1.96 7.63 -2.39 -0.02 1.94 16 Total: -1.00 -61.92 368.77 3.02 -58.90 By element: Atomic # 1 Polarization: 25.74 SS G_CDS: 0.35 Total: 26.08 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: 5.05 Total: -2.47 kcal Atomic # 7 Polarization: -104.88 SS G_CDS: -3.08 Total: -107.96 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: -0.07 Total: -22.97 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Atomic # 16 Polarization: 5.01 SS G_CDS: -1.25 Total: 3.77 kcal Total: -61.92 3.02 -58.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993566115.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.448 kcal (2) G-P(sol) polarization free energy of solvation -61.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds