Wall clock time and date at job start Tue Mar 31 2020 13:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50701 * 109.47489 * 2 1 4 4 C 1.33816 * 124.52711 * 89.99309 * 3 2 1 5 5 C 1.37470 * 115.09971 * 179.74642 * 4 3 2 6 6 C 1.36647 * 113.29925 * 0.50027 * 5 4 3 7 7 C 1.46580 * 125.45895 * 179.79078 * 6 5 4 8 8 O 1.21704 * 120.00144 * 359.72713 * 7 6 5 9 9 N 1.34771 * 120.00144 * 179.71952 * 7 6 5 10 10 C 1.46500 * 120.00346 * 180.02562 * 9 7 6 11 11 H 1.09012 * 109.49737 * 34.93574 * 10 9 7 12 12 C 1.53036 * 109.52490 * 274.85761 * 10 9 7 13 13 C 1.53038 * 109.53889 * 178.66513 * 12 10 9 14 14 C 1.52761 * 109.38433 * 61.23692 * 13 12 10 15 15 N 1.46921 * 109.01011 * 305.59159 * 14 13 12 16 16 C 1.36939 * 120.62911 * 233.58497 * 15 14 13 17 17 H 1.07996 * 120.00148 * 150.26525 * 16 15 14 18 18 C 1.38810 * 120.00236 * 330.26545 * 16 15 14 19 19 N 1.31625 * 119.99732 * 344.42122 * 18 16 15 20 20 Si 1.86792 * 120.00377 * 164.41831 * 18 16 15 21 21 H 1.48506 * 109.47101 * 266.31578 * 20 18 16 22 22 H 1.48495 * 109.47126 * 26.31329 * 20 18 16 23 23 H 1.48497 * 109.47394 * 146.31947 * 20 18 16 24 24 C 1.46918 * 118.74098 * 53.30385 * 15 14 13 25 25 H 1.09007 * 109.58868 * 66.43355 * 24 15 14 26 26 C 1.52999 * 109.58922 * 186.71760 * 24 15 14 27 27 S 1.70618 * 124.51988 * 270.02187 * 3 2 1 28 28 H 1.09004 * 109.46737 * 60.00362 * 1 2 3 29 29 H 1.09002 * 109.47459 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47333 * 300.00456 * 1 2 3 31 31 H 1.08999 * 109.47333 * 239.99544 * 2 1 3 32 32 H 1.09003 * 109.47255 * 119.99667 * 2 1 3 33 33 H 1.07999 * 122.44548 * 0.02562 * 4 3 2 34 34 H 1.08007 * 123.34787 * 180.29532 * 5 4 3 35 35 H 0.97006 * 120.00040 * 0.02562 * 9 7 6 36 36 H 1.08997 * 109.45884 * 298.68416 * 12 10 9 37 37 H 1.08996 * 109.46188 * 58.65670 * 12 10 9 38 38 H 1.09005 * 109.49725 * 181.31413 * 13 12 10 39 39 H 1.09003 * 109.49808 * 301.37997 * 13 12 10 40 40 H 1.09001 * 109.51243 * 185.70529 * 14 13 12 41 41 H 1.09003 * 109.43084 * 65.42740 * 14 13 12 42 42 H 0.97001 * 120.00000 * 180.02562 * 19 18 16 43 43 H 1.08993 * 109.47227 * 59.99966 * 26 24 15 44 44 H 1.09007 * 109.47057 * 180.02562 * 26 24 15 45 45 H 1.08997 * 109.47098 * 300.00024 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2851 2.1359 1.1025 5 6 2.7424 3.4126 0.8773 6 6 2.8457 3.7236 -0.4493 7 6 3.2995 5.0088 -0.9886 8 8 3.6177 5.9078 -0.2324 9 7 3.3645 5.1951 -2.3218 10 6 3.8186 6.4794 -2.8608 11 1 4.5900 6.8941 -2.2117 12 6 2.6373 7.4495 -2.9345 13 6 3.1179 8.8017 -3.4662 14 6 3.6841 8.6209 -4.8735 15 7 4.7217 7.5812 -4.8419 16 6 5.9748 7.8309 -5.3344 17 1 6.8306 7.3214 -4.9169 18 6 6.1452 8.7391 -6.3703 19 7 5.1085 9.1273 -7.0823 20 14 7.8457 9.4102 -6.7539 21 1 8.0459 10.6928 -6.0326 22 1 8.8740 8.4315 -6.3181 23 1 7.9690 9.6400 -8.2158 24 6 4.3912 6.2705 -4.2662 25 1 3.6505 5.7727 -4.8922 26 6 5.6551 5.4120 -4.1860 27 16 2.3542 2.3325 -1.4058 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.1445 1.7375 2.0964 34 1 2.9919 4.1024 1.6701 35 1 3.1107 4.4787 -2.9245 36 1 1.8771 7.0458 -3.6031 37 1 2.2128 7.5810 -1.9393 38 1 2.2807 9.4991 -3.4965 39 1 3.8954 9.1948 -2.8112 40 1 4.1186 9.5606 -5.2146 41 1 2.8846 8.3188 -5.5500 42 1 5.2276 9.7616 -7.8064 43 1 6.3924 5.9090 -3.5557 44 1 5.4076 4.4400 -3.7591 45 1 6.0655 5.2752 -5.1865 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993566128.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:39 Heat of formation + Delta-G solvation = 1.638768 kcal Electronic energy + Delta-G solvation = -25083.740946 eV Core-core repulsion = 21613.763197 eV Total energy + Delta-G solvation = -3469.977749 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.82434 -38.33434 -37.41279 -34.32133 -34.02424 -32.59485 -31.69512 -29.74382 -28.55223 -26.35119 -25.37101 -24.90688 -22.78365 -22.38551 -20.89592 -20.69640 -19.77996 -18.90100 -17.91786 -16.44651 -16.28460 -15.66346 -15.21789 -14.97881 -14.74559 -14.49113 -14.18927 -13.79274 -13.77047 -13.42558 -13.35210 -13.14423 -12.78904 -12.58719 -12.52303 -12.14832 -11.87541 -11.69563 -11.54423 -11.47263 -11.11327 -11.03718 -10.91736 -10.77042 -10.56531 -10.30334 -10.14933 -10.03056 -9.97341 -9.65743 -9.38737 -8.91453 -8.77748 -8.63413 -8.45210 -6.67592 -5.79788 -3.24416 0.37139 1.27760 1.70394 2.26067 3.31305 3.31795 3.38078 3.45563 3.46616 4.32684 4.48877 4.63952 4.86385 4.87541 5.04486 5.20496 5.28835 5.34061 5.38999 5.44258 5.51061 5.55058 5.59637 5.78243 5.78362 5.82561 5.95525 6.00251 6.07290 6.18917 6.21126 6.33671 6.41074 6.53117 6.61477 6.70519 6.75453 6.85279 6.98401 7.06323 7.39940 7.65751 7.68403 7.81957 8.33445 8.44956 9.19859 9.82334 10.38892 11.29033 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.025224 B = 0.002809 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.788202 B = 9964.595623 C =10209.190073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.055 4.055 3 C -0.197 4.197 4 C -0.152 4.152 5 C -0.058 4.058 6 C -0.259 4.259 7 C 0.586 3.414 8 O -0.532 6.532 9 N -0.713 5.713 10 C 0.131 3.869 11 H 0.089 0.911 12 C -0.117 4.117 13 C -0.140 4.140 14 C 0.169 3.831 15 N -0.581 5.581 16 C -0.252 4.252 17 H 0.071 0.929 18 C 0.005 3.995 19 N -0.902 5.902 20 Si 0.902 3.098 21 H -0.287 1.287 22 H -0.278 1.278 23 H -0.292 1.292 24 C 0.168 3.832 25 H 0.028 0.972 26 C -0.137 4.137 27 S 0.200 5.800 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.142 0.858 34 H 0.152 0.848 35 H 0.393 0.607 36 H 0.054 0.946 37 H 0.050 0.950 38 H 0.052 0.948 39 H 0.056 0.944 40 H 0.087 0.913 41 H 0.019 0.981 42 H 0.253 0.747 43 H 0.055 0.945 44 H 0.037 0.963 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.120 -17.184 12.734 23.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.094 4.094 3 C -0.317 4.317 4 C -0.183 4.183 5 C -0.091 4.091 6 C -0.379 4.379 7 C 0.372 3.628 8 O -0.410 6.410 9 N -0.363 5.363 10 C 0.026 3.974 11 H 0.107 0.893 12 C -0.156 4.156 13 C -0.180 4.180 14 C 0.044 3.956 15 N -0.305 5.305 16 C -0.382 4.382 17 H 0.088 0.912 18 C -0.194 4.194 19 N -0.546 5.546 20 Si 0.732 3.268 21 H -0.214 1.214 22 H -0.204 1.204 23 H -0.218 1.218 24 C 0.060 3.940 25 H 0.045 0.955 26 C -0.195 4.195 27 S 0.468 5.532 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.160 0.840 34 H 0.170 0.830 35 H 0.226 0.774 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.106 0.894 41 H 0.037 0.963 42 H 0.063 0.937 43 H 0.074 0.926 44 H 0.056 0.944 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.958 -16.695 11.514 22.171 hybrid contribution 0.713 0.325 1.101 1.352 sum -8.245 -16.370 12.615 22.251 Atomic orbital electron populations 1.21806 0.94073 1.02137 1.02672 1.20144 0.96363 0.89427 1.03497 1.24248 1.07457 1.02073 0.97884 1.19933 1.04726 0.94200 0.99477 1.20739 0.96893 0.96195 0.95282 1.24744 1.15707 0.99456 0.98028 1.16949 0.77855 0.85389 0.82653 1.90825 1.49353 1.42780 1.58061 1.46041 1.67261 1.17236 1.05726 1.21856 0.96574 0.81491 0.97496 0.89341 1.21769 0.97312 0.96483 1.00045 1.22114 0.99761 0.95074 1.01010 1.20745 0.90279 0.94422 0.90157 1.44018 1.10639 1.06388 1.69405 1.19182 0.84204 1.23190 1.11601 0.91164 1.25083 0.97037 1.01640 0.95658 1.70035 1.28970 1.35035 1.20534 0.86279 0.84102 0.79264 0.77135 1.21443 1.20364 1.21803 1.20558 0.94971 0.88674 0.89818 0.95471 1.21826 0.98153 0.97198 1.02303 1.83028 1.59957 1.02579 1.07644 0.92295 0.91898 0.92190 0.90586 0.89869 0.84044 0.83046 0.77365 0.92701 0.93094 0.92903 0.92484 0.89434 0.96280 0.93657 0.92611 0.94358 0.91611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.89 37.15 0.37 -0.48 16 2 C -0.06 -0.35 6.36 -27.89 -0.18 -0.52 16 3 C -0.20 -1.74 5.53 -35.86 -0.20 -1.94 16 4 C -0.15 -1.43 9.99 -41.41 -0.41 -1.84 16 5 C -0.06 -0.68 10.01 -40.44 -0.40 -1.09 16 6 C -0.26 -3.38 6.45 -36.79 -0.24 -3.62 16 7 C 0.59 9.54 7.75 -12.90 -0.10 9.44 16 8 O -0.53 -10.52 16.50 5.18 0.09 -10.44 16 9 N -0.71 -11.10 4.59 -55.02 -0.25 -11.35 16 10 C 0.13 2.43 2.00 -67.81 -0.14 2.30 16 11 H 0.09 1.87 7.58 -51.92 -0.39 1.48 16 12 C -0.12 -2.15 5.46 -26.69 -0.15 -2.30 16 13 C -0.14 -2.78 6.06 -26.83 -0.16 -2.94 16 14 C 0.17 4.01 5.26 -3.94 -0.02 3.99 16 15 N -0.58 -14.17 2.99 -165.04 -0.49 -14.67 16 16 C -0.25 -6.70 8.57 -15.06 -0.13 -6.83 16 17 H 0.07 1.84 6.23 -52.49 -0.33 1.51 16 18 C 0.00 0.13 4.94 -17.43 -0.09 0.04 16 19 N -0.90 -25.73 11.23 55.49 0.62 -25.11 16 20 Si 0.90 21.55 29.58 -169.99 -5.03 16.52 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 24 C 0.17 3.40 3.03 -67.60 -0.20 3.20 16 25 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 26 C -0.14 -2.58 7.84 37.16 0.29 -2.29 16 27 S 0.20 1.98 22.10 -107.50 -2.38 -0.40 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.15 1.73 8.06 -52.48 -0.42 1.31 16 35 H 0.39 5.22 7.72 -40.82 -0.32 4.90 16 36 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.09 2.31 6.14 -51.93 -0.32 2.00 16 41 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 43 H 0.05 1.10 7.43 -51.93 -0.39 0.71 16 44 H 0.04 0.60 7.81 -51.93 -0.41 0.19 16 45 H 0.06 1.31 7.63 -51.93 -0.40 0.91 16 LS Contribution 371.99 15.07 5.61 5.61 Total: -1.00 -30.66 371.99 -10.77 -41.43 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -7.17 Total: 3.29 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: -1.76 Total: -4.89 kcal Atomic # 7 Polarization: -51.00 SS G_CDS: -0.12 Total: -51.12 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.09 Total: -10.44 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Atomic # 16 Polarization: 1.98 SS G_CDS: -2.38 Total: -0.40 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.66 -10.77 -41.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993566128.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.068 kcal (2) G-P(sol) polarization free energy of solvation -30.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds