Wall clock time and date at job start Tue Mar 31 2020 13:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50701 * 109.47489 * 2 1 4 4 C 1.33816 * 124.52711 * 89.99309 * 3 2 1 5 5 C 1.37470 * 115.09971 * 179.74642 * 4 3 2 6 6 C 1.36647 * 113.29925 * 0.50027 * 5 4 3 7 7 C 1.46580 * 125.45895 * 179.79078 * 6 5 4 8 8 O 1.21704 * 120.00144 * 359.72713 * 7 6 5 9 9 N 1.34771 * 120.00144 * 179.71952 * 7 6 5 10 10 C 1.46500 * 120.00346 * 180.02562 * 9 7 6 11 11 H 1.09012 * 109.49737 * 34.93574 * 10 9 7 12 12 C 1.53036 * 109.52490 * 274.85761 * 10 9 7 13 13 C 1.53038 * 109.53889 * 178.66513 * 12 10 9 14 14 C 1.52761 * 109.38433 * 61.23692 * 13 12 10 15 15 N 1.46921 * 109.01011 * 305.59159 * 14 13 12 16 16 C 1.36939 * 120.62911 * 233.58497 * 15 14 13 17 17 H 1.07996 * 120.00148 * 150.26525 * 16 15 14 18 18 C 1.38810 * 120.00236 * 330.26545 * 16 15 14 19 19 N 1.31625 * 119.99732 * 344.42122 * 18 16 15 20 20 Si 1.86792 * 120.00377 * 164.41831 * 18 16 15 21 21 H 1.48506 * 109.47101 * 266.31578 * 20 18 16 22 22 H 1.48495 * 109.47126 * 26.31329 * 20 18 16 23 23 H 1.48497 * 109.47394 * 146.31947 * 20 18 16 24 24 C 1.46918 * 118.74098 * 53.30385 * 15 14 13 25 25 H 1.09007 * 109.58868 * 66.43355 * 24 15 14 26 26 C 1.52999 * 109.58922 * 186.71760 * 24 15 14 27 27 S 1.70618 * 124.51988 * 270.02187 * 3 2 1 28 28 H 1.09004 * 109.46737 * 60.00362 * 1 2 3 29 29 H 1.09002 * 109.47459 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47333 * 300.00456 * 1 2 3 31 31 H 1.08999 * 109.47333 * 239.99544 * 2 1 3 32 32 H 1.09003 * 109.47255 * 119.99667 * 2 1 3 33 33 H 1.07999 * 122.44548 * 0.02562 * 4 3 2 34 34 H 1.08007 * 123.34787 * 180.29532 * 5 4 3 35 35 H 0.97006 * 120.00040 * 0.02562 * 9 7 6 36 36 H 1.08997 * 109.45884 * 298.68416 * 12 10 9 37 37 H 1.08996 * 109.46188 * 58.65670 * 12 10 9 38 38 H 1.09005 * 109.49725 * 181.31413 * 13 12 10 39 39 H 1.09003 * 109.49808 * 301.37997 * 13 12 10 40 40 H 1.09001 * 109.51243 * 185.70529 * 14 13 12 41 41 H 1.09003 * 109.43084 * 65.42740 * 14 13 12 42 42 H 0.97001 * 120.00000 * 180.02562 * 19 18 16 43 43 H 1.08993 * 109.47227 * 59.99966 * 26 24 15 44 44 H 1.09007 * 109.47057 * 180.02562 * 26 24 15 45 45 H 1.08997 * 109.47098 * 300.00024 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2851 2.1359 1.1025 5 6 2.7424 3.4126 0.8773 6 6 2.8457 3.7236 -0.4493 7 6 3.2995 5.0088 -0.9886 8 8 3.6177 5.9078 -0.2324 9 7 3.3645 5.1951 -2.3218 10 6 3.8186 6.4794 -2.8608 11 1 4.5900 6.8941 -2.2117 12 6 2.6373 7.4495 -2.9345 13 6 3.1179 8.8017 -3.4662 14 6 3.6841 8.6209 -4.8735 15 7 4.7217 7.5812 -4.8419 16 6 5.9748 7.8309 -5.3344 17 1 6.8306 7.3214 -4.9169 18 6 6.1452 8.7391 -6.3703 19 7 5.1085 9.1273 -7.0823 20 14 7.8457 9.4102 -6.7539 21 1 8.0459 10.6928 -6.0326 22 1 8.8740 8.4315 -6.3181 23 1 7.9690 9.6400 -8.2158 24 6 4.3912 6.2705 -4.2662 25 1 3.6505 5.7727 -4.8922 26 6 5.6551 5.4120 -4.1860 27 16 2.3542 2.3325 -1.4058 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.1445 1.7375 2.0964 34 1 2.9919 4.1024 1.6701 35 1 3.1107 4.4787 -2.9245 36 1 1.8771 7.0458 -3.6031 37 1 2.2128 7.5810 -1.9393 38 1 2.2807 9.4991 -3.4965 39 1 3.8954 9.1948 -2.8112 40 1 4.1186 9.5606 -5.2146 41 1 2.8846 8.3188 -5.5500 42 1 5.2276 9.7616 -7.8064 43 1 6.3924 5.9090 -3.5557 44 1 5.4076 4.4400 -3.7591 45 1 6.0655 5.2752 -5.1865 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993566128.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:38 Heat of formation + Delta-G solvation = -15.511559 kcal Electronic energy + Delta-G solvation = -25084.484640 eV Core-core repulsion = 21613.763197 eV Total energy + Delta-G solvation = -3470.721443 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.16365 -39.51641 -38.66627 -35.93889 -34.68526 -34.28113 -33.44725 -31.29642 -29.60427 -27.90430 -26.92665 -26.13689 -24.06130 -23.20249 -22.40764 -22.17137 -21.28487 -20.10915 -18.96472 -18.22315 -17.43517 -17.06985 -16.63839 -16.24740 -16.04896 -15.61069 -15.47958 -15.19692 -15.03762 -14.82877 -14.57090 -14.42465 -14.22549 -13.81891 -13.38548 -13.34890 -13.19170 -12.85628 -12.82342 -12.71115 -12.55437 -12.41737 -12.37641 -12.06077 -12.01298 -11.85999 -11.80106 -11.67260 -11.64549 -11.26827 -11.06405 -10.53556 -10.17291 -9.63491 -9.52899 -8.66369 -7.86192 -5.32559 -0.50754 0.45990 0.90696 1.39602 1.46565 1.49076 1.56806 2.03532 2.16985 2.53309 3.29329 3.58182 3.71189 3.77174 3.91253 4.02091 4.16097 4.17753 4.33579 4.35429 4.42610 4.47969 4.50292 4.59059 4.73179 4.81599 4.86551 4.89059 4.93766 5.00954 5.06481 5.10800 5.13640 5.18257 5.22160 5.25424 5.36808 5.41088 5.43982 5.44624 5.56138 5.70153 5.75097 6.41097 6.43838 7.09689 7.16343 7.85266 8.37397 9.21090 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.025224 B = 0.002809 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.788202 B = 9964.595623 C =10209.190073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.057 4.057 3 C -0.181 4.181 4 C -0.161 4.161 5 C -0.053 4.053 6 C -0.301 4.301 7 C 0.588 3.412 8 O -0.576 6.576 9 N -0.705 5.705 10 C 0.147 3.853 11 H 0.061 0.939 12 C -0.110 4.110 13 C -0.129 4.129 14 C 0.176 3.824 15 N -0.599 5.599 16 C -0.254 4.254 17 H 0.072 0.928 18 C -0.047 4.047 19 N -0.932 5.932 20 Si 0.961 3.039 21 H -0.290 1.290 22 H -0.268 1.268 23 H -0.295 1.295 24 C 0.165 3.835 25 H 0.034 0.966 26 C -0.129 4.129 27 S 0.229 5.771 28 H 0.051 0.949 29 H 0.078 0.922 30 H 0.057 0.943 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.167 0.833 34 H 0.146 0.854 35 H 0.406 0.594 36 H 0.067 0.933 37 H 0.054 0.946 38 H 0.074 0.926 39 H 0.044 0.956 40 H 0.055 0.945 41 H 0.005 0.995 42 H 0.249 0.751 43 H 0.041 0.959 44 H 0.071 0.929 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.876 -20.042 13.858 26.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.096 4.096 3 C -0.302 4.302 4 C -0.191 4.191 5 C -0.088 4.088 6 C -0.421 4.421 7 C 0.376 3.624 8 O -0.458 6.458 9 N -0.355 5.355 10 C 0.040 3.960 11 H 0.079 0.921 12 C -0.149 4.149 13 C -0.169 4.169 14 C 0.051 3.949 15 N -0.323 5.323 16 C -0.384 4.384 17 H 0.090 0.910 18 C -0.243 4.243 19 N -0.578 5.578 20 Si 0.790 3.210 21 H -0.217 1.217 22 H -0.193 1.193 23 H -0.221 1.221 24 C 0.058 3.942 25 H 0.052 0.948 26 C -0.186 4.186 27 S 0.497 5.503 28 H 0.070 0.930 29 H 0.097 0.903 30 H 0.076 0.924 31 H 0.104 0.896 32 H 0.119 0.881 33 H 0.184 0.816 34 H 0.164 0.836 35 H 0.242 0.758 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.093 0.907 39 H 0.063 0.937 40 H 0.073 0.927 41 H 0.023 0.977 42 H 0.058 0.942 43 H 0.060 0.940 44 H 0.090 0.910 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.723 -19.601 12.640 25.269 hybrid contribution 0.880 1.068 0.817 1.607 sum -8.843 -18.533 13.456 24.551 Atomic orbital electron populations 1.21813 0.93492 1.03115 1.02246 1.20315 0.96716 0.87665 1.04913 1.24714 1.05226 1.03031 0.97188 1.20103 1.04848 0.93218 1.00939 1.20930 0.95946 0.97125 0.94755 1.24457 1.18926 0.99497 0.99191 1.17340 0.76783 0.86147 0.82173 1.90793 1.51400 1.44664 1.58930 1.45804 1.67151 1.16484 1.06039 1.21387 0.95957 0.82884 0.95731 0.92103 1.21694 0.97368 0.95470 1.00340 1.21954 1.00012 0.96664 0.98238 1.20546 0.89582 0.92904 0.91909 1.44250 1.10217 1.08220 1.69618 1.19447 0.85314 1.22667 1.10988 0.91049 1.25764 1.00087 1.02417 0.96003 1.70170 1.30662 1.35833 1.21174 0.85343 0.80719 0.78495 0.76444 1.21697 1.19287 1.22119 1.20702 0.95956 0.87135 0.90383 0.94835 1.21738 0.96990 0.98431 1.01459 1.82880 1.59150 1.00840 1.07407 0.92978 0.90296 0.92405 0.89558 0.88112 0.81586 0.83640 0.75806 0.91466 0.92677 0.90708 0.93676 0.92679 0.97671 0.94183 0.93977 0.90986 0.92883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.89 71.98 0.71 -0.48 16 2 C -0.06 -0.50 6.36 29.85 0.19 -0.31 16 3 C -0.18 -2.63 5.53 24.68 0.14 -2.50 16 4 C -0.16 -2.59 9.99 21.08 0.21 -2.37 16 5 C -0.05 -1.18 10.01 21.72 0.22 -0.96 16 6 C -0.30 -7.50 6.45 24.08 0.16 -7.35 16 7 C 0.59 18.92 7.75 86.42 0.67 19.59 16 8 O -0.58 -23.18 16.50 -4.36 -0.07 -23.25 16 9 N -0.70 -21.30 4.59 -446.22 -2.05 -23.35 16 10 C 0.15 5.41 2.00 45.07 0.09 5.50 16 11 H 0.06 2.62 7.58 -2.38 -0.02 2.61 16 12 C -0.11 -3.98 5.46 30.62 0.17 -3.81 16 13 C -0.13 -5.15 6.06 30.53 0.19 -4.97 16 14 C 0.18 8.54 5.26 86.22 0.45 8.99 16 15 N -0.60 -29.69 2.99 -676.07 -2.02 -31.71 16 16 C -0.25 -13.71 8.57 84.03 0.72 -12.99 16 17 H 0.07 3.77 6.23 -2.91 -0.02 3.75 16 18 C -0.05 -2.61 4.94 84.86 0.42 -2.19 16 19 N -0.93 -54.61 11.23 21.65 0.24 -54.37 16 20 Si 0.96 45.01 29.58 68.60 2.03 47.04 16 21 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 22 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 23 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 24 C 0.17 6.65 3.03 44.98 0.14 6.79 16 25 H 0.03 1.34 8.14 -2.38 -0.02 1.32 16 26 C -0.13 -4.75 7.84 71.98 0.56 -4.18 16 27 S 0.23 3.97 22.10 -56.49 -1.25 2.72 16 28 H 0.05 0.50 8.14 -2.38 -0.02 0.48 16 29 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.09 0.62 8.14 -2.39 -0.02 0.61 16 32 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.17 1.80 8.06 -2.91 -0.02 1.77 16 34 H 0.15 3.30 8.06 -2.91 -0.02 3.27 16 35 H 0.41 10.09 7.72 -92.70 -0.72 9.38 16 36 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.07 2.63 8.14 -2.38 -0.02 2.61 16 39 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.05 3.02 6.14 -2.39 -0.01 3.01 16 41 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 42 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 43 H 0.04 1.65 7.43 -2.39 -0.02 1.63 16 44 H 0.07 2.13 7.81 -2.38 -0.02 2.11 16 45 H 0.05 2.08 7.63 -2.39 -0.02 2.06 16 Total: -1.00 -67.82 371.99 2.18 -65.64 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: 0.27 Total: 18.52 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: 5.03 Total: -1.24 kcal Atomic # 7 Polarization: -105.60 SS G_CDS: -3.83 Total: -109.43 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.07 Total: -23.25 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Atomic # 16 Polarization: 3.97 SS G_CDS: -1.25 Total: 2.72 kcal Total: -67.82 2.18 -65.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993566128.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.125 kcal (2) G-P(sol) polarization free energy of solvation -67.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds