Wall clock time and date at job start Tue Mar 31 2020 13:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50699 * 109.47152 * 2 1 4 4 C 1.37475 * 123.35256 * 265.21774 * 3 2 1 5 5 C 1.33814 * 115.09885 * 180.29362 * 4 3 2 6 6 S 1.70615 * 110.95888 * 359.72563 * 5 4 3 7 7 C 1.36651 * 123.34999 * 84.99518 * 3 2 1 8 8 C 1.46574 * 125.46188 * 0.02562 * 7 3 2 9 9 O 1.21702 * 119.99806 * 359.71573 * 8 7 3 10 10 N 1.34779 * 120.00239 * 179.71716 * 8 7 3 11 11 C 1.46497 * 119.99886 * 179.97438 * 10 8 7 12 12 H 1.09004 * 109.50010 * 324.93106 * 11 10 8 13 13 C 1.53035 * 109.50014 * 85.00236 * 11 10 8 14 14 C 1.53041 * 109.54001 * 58.61455 * 13 11 10 15 15 C 1.53193 * 109.30945 * 61.36932 * 14 13 11 16 16 N 1.46932 * 108.77428 * 305.36377 * 15 14 13 17 17 C 1.36928 * 120.62883 * 233.58787 * 16 15 14 18 18 H 1.08004 * 120.00078 * 152.58946 * 17 16 15 19 19 C 1.38811 * 120.00434 * 332.58649 * 17 16 15 20 20 N 1.31621 * 119.99809 * 334.10005 * 19 17 16 21 21 Si 1.86798 * 120.00193 * 154.09793 * 19 17 16 22 22 H 1.48498 * 109.47305 * 269.99680 * 21 19 17 23 23 H 1.48493 * 109.47421 * 30.00357 * 21 19 17 24 24 H 1.48510 * 109.47216 * 150.00150 * 21 19 17 25 25 C 1.46921 * 118.73572 * 53.86298 * 16 15 14 26 26 H 1.09001 * 109.58789 * 65.93044 * 25 16 15 27 27 C 1.53003 * 109.58308 * 186.35070 * 25 16 15 28 28 H 1.08996 * 109.47539 * 299.99943 * 1 2 3 29 29 H 1.09000 * 109.47153 * 60.00575 * 1 2 3 30 30 H 1.09002 * 109.47236 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47230 * 239.99610 * 2 1 3 32 32 H 1.09004 * 109.46801 * 119.99792 * 2 1 3 33 33 H 1.08000 * 122.44818 * 0.02562 * 4 3 2 34 34 H 1.08002 * 124.51961 * 179.75060 * 5 4 3 35 35 H 0.96992 * 119.99676 * 0.02562 * 10 8 7 36 36 H 1.09006 * 109.45942 * 298.59749 * 13 11 10 37 37 H 1.08998 * 109.45256 * 178.63267 * 13 11 10 38 38 H 1.08999 * 109.49582 * 301.41532 * 14 13 11 39 39 H 1.09001 * 109.52690 * 181.33441 * 14 13 11 40 40 H 1.09000 * 109.58243 * 185.58397 * 15 14 13 41 41 H 1.08998 * 109.70395 * 65.22183 * 15 14 13 42 42 H 0.97001 * 120.00238 * 354.51123 * 20 19 17 43 43 H 1.08994 * 109.47278 * 60.00082 * 27 25 16 44 44 H 1.09006 * 109.46769 * 180.02562 * 27 25 16 45 45 H 1.08994 * 109.47175 * 299.99845 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3745 2.1015 -1.1443 5 6 2.8067 3.3533 -0.9524 6 16 2.7997 3.7538 0.7061 7 6 2.1888 2.1623 1.1371 8 6 1.9003 1.7024 2.4986 9 8 1.4797 0.5755 2.6839 10 7 2.1009 2.5274 3.5453 11 6 1.8120 2.0678 4.9060 12 1 0.9463 1.4056 4.8903 13 6 3.0231 1.3125 5.4581 14 6 4.2468 2.2316 5.4499 15 6 3.9785 3.4403 6.3521 16 7 2.7340 4.0886 5.9165 17 6 2.7096 5.4259 5.6232 18 1 1.9890 5.8108 4.9167 19 6 3.6109 6.2870 6.2339 20 7 4.1203 5.9815 7.4085 21 14 4.1009 7.8791 5.3888 22 1 5.2908 7.6396 4.5333 23 1 2.9754 8.3601 4.5481 24 1 4.4263 8.9037 6.4135 25 6 1.5149 3.2759 5.8074 26 1 1.2153 2.9318 6.7974 27 6 0.3930 4.1143 5.1915 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.3040 1.6569 -2.1260 34 1 3.1180 4.0211 -1.7420 35 1 2.4358 3.4256 3.3976 36 1 3.2207 0.4393 4.8363 37 1 2.8164 0.9920 6.4792 38 1 4.4390 2.5724 4.4326 39 1 5.1145 1.6862 5.8210 40 1 4.8053 4.1461 6.2727 41 1 3.8767 3.1115 7.3863 42 1 3.8071 5.1960 7.8836 43 1 0.6938 4.4511 4.1995 44 1 -0.5106 3.5098 5.1118 45 1 0.1963 4.9794 5.8247 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000994471030.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:21 Heat of formation + Delta-G solvation = 3.460136 kcal Electronic energy + Delta-G solvation = -26379.048886 eV Core-core repulsion = 22909.150117 eV Total energy + Delta-G solvation = -3469.898769 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.96552 -38.53698 -37.23703 -34.18546 -32.74893 -32.53330 -31.84897 -29.86622 -28.68507 -26.39311 -25.29705 -24.87474 -22.47390 -22.24800 -21.20239 -20.88363 -18.95545 -18.65746 -18.00195 -17.01665 -15.92819 -15.56543 -14.99326 -14.93352 -14.55794 -14.16836 -14.06766 -13.80601 -13.58751 -13.48673 -13.29985 -13.09723 -12.85944 -12.65221 -12.36374 -11.91081 -11.81320 -11.51842 -11.44293 -11.27100 -11.02162 -10.99452 -10.81717 -10.66319 -10.63157 -10.25547 -10.12074 -10.08211 -9.80996 -9.57287 -9.18667 -8.88997 -8.55081 -8.46032 -8.37097 -6.93844 -6.09807 -3.27403 0.55938 1.52839 1.92928 2.39189 3.42528 3.47055 3.47697 3.53989 3.64121 4.53320 4.77047 4.98732 5.11456 5.11989 5.20167 5.29961 5.37988 5.46066 5.47535 5.53945 5.61455 5.67203 5.77045 5.81808 5.97870 5.99888 6.03457 6.12156 6.17910 6.26064 6.32061 6.37244 6.38163 6.46596 6.52014 6.55321 6.62502 6.78942 6.89616 6.97067 7.08181 7.19128 7.91756 7.96920 8.50714 8.53895 9.05925 9.80448 10.24399 11.17731 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014532 B = 0.004800 C = 0.004032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.256615 B = 5831.556529 C = 6943.377621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.069 4.069 3 C -0.028 4.028 4 C -0.148 4.148 5 C -0.238 4.238 6 S 0.213 5.787 7 C -0.264 4.264 8 C 0.584 3.416 9 O -0.539 6.539 10 N -0.697 5.697 11 C 0.135 3.865 12 H 0.079 0.921 13 C -0.121 4.121 14 C -0.135 4.135 15 C 0.150 3.850 16 N -0.593 5.593 17 C -0.353 4.353 18 H 0.063 0.937 19 C -0.020 4.020 20 N -0.914 5.914 21 Si 1.061 2.939 22 H -0.293 1.293 23 H -0.292 1.292 24 H -0.291 1.291 25 C 0.160 3.840 26 H 0.039 0.961 27 C -0.133 4.133 28 H 0.060 0.940 29 H 0.047 0.953 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.094 0.906 33 H 0.140 0.860 34 H 0.166 0.834 35 H 0.407 0.593 36 H 0.054 0.946 37 H 0.063 0.937 38 H 0.056 0.944 39 H 0.050 0.950 40 H 0.080 0.920 41 H 0.017 0.983 42 H 0.270 0.730 43 H 0.053 0.947 44 H 0.039 0.961 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.696 -7.758 -14.310 16.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.108 4.108 3 C -0.043 4.043 4 C -0.180 4.180 5 C -0.376 4.376 6 S 0.482 5.518 7 C -0.385 4.385 8 C 0.370 3.630 9 O -0.419 6.419 10 N -0.348 5.348 11 C 0.029 3.971 12 H 0.097 0.903 13 C -0.160 4.160 14 C -0.174 4.174 15 C 0.024 3.976 16 N -0.318 5.318 17 C -0.482 4.482 18 H 0.081 0.919 19 C -0.223 4.223 20 N -0.553 5.553 21 Si 0.891 3.109 22 H -0.220 1.220 23 H -0.218 1.218 24 H -0.217 1.217 25 C 0.053 3.947 26 H 0.056 0.944 27 C -0.191 4.191 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.112 0.888 33 H 0.158 0.842 34 H 0.184 0.816 35 H 0.243 0.757 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.098 0.902 41 H 0.035 0.965 42 H 0.081 0.919 43 H 0.072 0.928 44 H 0.058 0.942 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.610 -5.803 -13.203 14.656 hybrid contribution -1.078 -2.031 -1.171 2.580 sum -3.687 -7.834 -14.373 16.779 Atomic orbital electron populations 1.21592 0.94489 1.01503 1.01728 1.20368 0.96387 0.90743 1.03314 1.19469 0.96997 0.97403 0.90439 1.19863 1.04366 0.94281 0.99488 1.25289 1.08464 1.01475 1.02370 1.83535 1.58925 1.11394 0.97897 1.24606 1.16263 0.99691 0.97919 1.16935 0.78082 0.85152 0.82792 1.90736 1.46931 1.19004 1.85228 1.45891 1.65650 1.17174 1.06039 1.21610 0.97199 0.97183 0.81089 0.90333 1.21774 0.95967 0.97844 1.00383 1.22015 0.96205 0.97898 1.01284 1.20978 0.90335 0.92616 0.93646 1.44275 1.02117 1.05603 1.79825 1.19976 1.22338 0.83283 1.22564 0.91900 1.25760 0.98926 1.02216 0.95406 1.70742 1.46194 1.28076 1.10301 0.83568 0.76035 0.75951 0.75331 1.22024 1.21813 1.21697 1.20803 0.88619 0.90282 0.94982 0.94353 1.21756 0.96115 0.99941 1.01272 0.92116 0.93426 0.92578 0.91688 0.88754 0.84189 0.81620 0.75666 0.92759 0.91844 0.92554 0.93178 0.90204 0.96540 0.91910 0.92794 0.94181 0.91723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.77 37.16 0.36 -1.22 16 2 C -0.07 -0.85 5.50 -27.88 -0.15 -1.00 16 3 C -0.03 -0.37 5.16 -105.47 -0.54 -0.91 16 4 C -0.15 -1.65 9.96 -41.41 -0.41 -2.06 16 5 C -0.24 -2.57 10.92 29.18 0.32 -2.25 16 6 S 0.21 2.77 22.16 -107.50 -2.38 0.39 16 7 C -0.26 -3.95 6.45 -36.80 -0.24 -4.19 16 8 C 0.58 9.97 7.74 -12.90 -0.10 9.87 16 9 O -0.54 -10.01 13.37 5.19 0.07 -9.94 16 10 N -0.70 -12.09 3.47 -54.81 -0.19 -12.28 16 11 C 0.14 2.41 2.33 -67.59 -0.16 2.25 16 12 H 0.08 1.39 7.58 -51.93 -0.39 1.00 16 13 C -0.12 -2.11 5.57 -26.69 -0.15 -2.26 16 14 C -0.13 -2.52 5.93 -26.61 -0.16 -2.68 16 15 C 0.15 3.31 4.71 -3.71 -0.02 3.30 16 16 N -0.59 -13.41 2.50 -164.52 -0.41 -13.82 16 17 C -0.35 -8.85 8.52 -15.06 -0.13 -8.98 16 18 H 0.06 1.57 6.24 -52.48 -0.33 1.24 16 19 C -0.02 -0.54 4.66 -17.43 -0.08 -0.62 16 20 N -0.91 -26.04 12.42 55.49 0.69 -25.35 16 21 Si 1.06 24.01 29.99 -169.99 -5.10 18.91 16 22 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 23 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 25 C 0.16 3.14 3.22 -67.37 -0.22 2.92 16 26 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 27 C -0.13 -2.45 7.74 37.16 0.29 -2.16 16 28 H 0.06 0.84 7.59 -51.93 -0.39 0.45 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.65 8.12 -51.93 -0.42 0.23 16 32 H 0.09 1.36 6.33 -51.93 -0.33 1.03 16 33 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 34 H 0.17 1.33 8.06 -52.49 -0.42 0.91 16 35 H 0.41 7.35 6.90 -40.82 -0.28 7.07 16 36 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.06 1.09 7.53 -51.93 -0.39 0.70 16 39 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.08 2.00 6.31 -51.93 -0.33 1.67 16 41 H 0.02 0.38 7.88 -51.93 -0.41 -0.03 16 42 H 0.27 7.78 6.77 -40.82 -0.28 7.50 16 43 H 0.05 1.00 6.43 -51.93 -0.33 0.67 16 44 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.06 1.28 7.60 -51.93 -0.39 0.89 16 LS Contribution 361.82 15.07 5.45 5.45 Total: -1.00 -28.29 361.82 -10.14 -38.43 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -6.88 Total: 8.21 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: -1.39 Total: -9.99 kcal Atomic # 7 Polarization: -51.54 SS G_CDS: 0.09 Total: -51.46 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.07 Total: -9.94 kcal Atomic # 14 Polarization: 24.01 SS G_CDS: -5.10 Total: 18.91 kcal Atomic # 16 Polarization: 2.77 SS G_CDS: -2.38 Total: 0.39 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -28.29 -10.14 -38.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994471030.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.886 kcal (2) G-P(sol) polarization free energy of solvation -28.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds