Wall clock time and date at job start Tue Mar 31 2020 13:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50699 * 109.47152 * 2 1 4 4 C 1.37475 * 123.35256 * 265.21774 * 3 2 1 5 5 C 1.33814 * 115.09885 * 180.29362 * 4 3 2 6 6 S 1.70615 * 110.95888 * 359.72563 * 5 4 3 7 7 C 1.36651 * 123.34999 * 84.99518 * 3 2 1 8 8 C 1.46574 * 125.46188 * 0.02562 * 7 3 2 9 9 O 1.21702 * 119.99806 * 359.71573 * 8 7 3 10 10 N 1.34779 * 120.00239 * 179.71716 * 8 7 3 11 11 C 1.46497 * 119.99886 * 179.97438 * 10 8 7 12 12 H 1.09004 * 109.50010 * 324.93106 * 11 10 8 13 13 C 1.53035 * 109.50014 * 85.00236 * 11 10 8 14 14 C 1.53041 * 109.54001 * 58.61455 * 13 11 10 15 15 C 1.53193 * 109.30945 * 61.36932 * 14 13 11 16 16 N 1.46932 * 108.77428 * 305.36377 * 15 14 13 17 17 C 1.36928 * 120.62883 * 233.58787 * 16 15 14 18 18 H 1.08004 * 120.00078 * 152.58946 * 17 16 15 19 19 C 1.38811 * 120.00434 * 332.58649 * 17 16 15 20 20 N 1.31621 * 119.99809 * 334.10005 * 19 17 16 21 21 Si 1.86798 * 120.00193 * 154.09793 * 19 17 16 22 22 H 1.48498 * 109.47305 * 269.99680 * 21 19 17 23 23 H 1.48493 * 109.47421 * 30.00357 * 21 19 17 24 24 H 1.48510 * 109.47216 * 150.00150 * 21 19 17 25 25 C 1.46921 * 118.73572 * 53.86298 * 16 15 14 26 26 H 1.09001 * 109.58789 * 65.93044 * 25 16 15 27 27 C 1.53003 * 109.58308 * 186.35070 * 25 16 15 28 28 H 1.08996 * 109.47539 * 299.99943 * 1 2 3 29 29 H 1.09000 * 109.47153 * 60.00575 * 1 2 3 30 30 H 1.09002 * 109.47236 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47230 * 239.99610 * 2 1 3 32 32 H 1.09004 * 109.46801 * 119.99792 * 2 1 3 33 33 H 1.08000 * 122.44818 * 0.02562 * 4 3 2 34 34 H 1.08002 * 124.51961 * 179.75060 * 5 4 3 35 35 H 0.96992 * 119.99676 * 0.02562 * 10 8 7 36 36 H 1.09006 * 109.45942 * 298.59749 * 13 11 10 37 37 H 1.08998 * 109.45256 * 178.63267 * 13 11 10 38 38 H 1.08999 * 109.49582 * 301.41532 * 14 13 11 39 39 H 1.09001 * 109.52690 * 181.33441 * 14 13 11 40 40 H 1.09000 * 109.58243 * 185.58397 * 15 14 13 41 41 H 1.08998 * 109.70395 * 65.22183 * 15 14 13 42 42 H 0.97001 * 120.00238 * 354.51123 * 20 19 17 43 43 H 1.08994 * 109.47278 * 60.00082 * 27 25 16 44 44 H 1.09006 * 109.46769 * 180.02562 * 27 25 16 45 45 H 1.08994 * 109.47175 * 299.99845 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3745 2.1015 -1.1443 5 6 2.8067 3.3533 -0.9524 6 16 2.7997 3.7538 0.7061 7 6 2.1888 2.1623 1.1371 8 6 1.9003 1.7024 2.4986 9 8 1.4797 0.5755 2.6839 10 7 2.1009 2.5274 3.5453 11 6 1.8120 2.0678 4.9060 12 1 0.9463 1.4056 4.8903 13 6 3.0231 1.3125 5.4581 14 6 4.2468 2.2316 5.4499 15 6 3.9785 3.4403 6.3521 16 7 2.7340 4.0886 5.9165 17 6 2.7096 5.4259 5.6232 18 1 1.9890 5.8108 4.9167 19 6 3.6109 6.2870 6.2339 20 7 4.1203 5.9815 7.4085 21 14 4.1009 7.8791 5.3888 22 1 5.2908 7.6396 4.5333 23 1 2.9754 8.3601 4.5481 24 1 4.4263 8.9037 6.4135 25 6 1.5149 3.2759 5.8074 26 1 1.2153 2.9318 6.7974 27 6 0.3930 4.1143 5.1915 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.3040 1.6569 -2.1260 34 1 3.1180 4.0211 -1.7420 35 1 2.4358 3.4256 3.3976 36 1 3.2207 0.4393 4.8363 37 1 2.8164 0.9920 6.4792 38 1 4.4390 2.5724 4.4326 39 1 5.1145 1.6862 5.8210 40 1 4.8053 4.1461 6.2727 41 1 3.8767 3.1115 7.3863 42 1 3.8071 5.1960 7.8836 43 1 0.6938 4.4511 4.1995 44 1 -0.5106 3.5098 5.1118 45 1 0.1963 4.9794 5.8247 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000994471030.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:20 Heat of formation + Delta-G solvation = -10.633385 kcal Electronic energy + Delta-G solvation = -26379.660026 eV Core-core repulsion = 22909.150117 eV Total energy + Delta-G solvation = -3470.509910 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.30612 -39.81288 -38.53867 -35.84186 -34.15804 -33.68165 -33.45803 -31.39579 -29.94649 -27.95548 -26.81065 -26.23526 -23.89530 -23.28039 -22.68185 -22.43593 -20.44100 -19.92120 -19.11603 -18.78298 -17.06814 -16.98562 -16.41182 -16.26753 -15.99526 -15.76194 -15.42358 -15.08893 -15.04678 -14.78995 -14.56167 -14.46569 -14.26922 -13.84627 -13.52524 -13.23436 -13.20961 -12.83426 -12.80524 -12.73880 -12.55308 -12.37568 -12.28159 -11.96396 -11.89019 -11.85079 -11.75407 -11.60020 -11.52991 -10.98619 -10.86109 -10.40147 -10.09645 -9.69844 -9.43326 -8.86645 -8.14302 -5.29686 -0.44024 0.54331 0.99780 1.44184 1.62791 1.68728 1.84601 2.19548 2.23943 2.69637 3.28201 3.46302 3.78809 3.90638 3.95351 3.97166 4.07559 4.19009 4.24642 4.33874 4.43652 4.48849 4.54428 4.55132 4.60167 4.78685 4.83156 4.85130 4.86664 4.92445 5.00644 5.07413 5.08157 5.12078 5.21558 5.29651 5.33267 5.35174 5.39217 5.44308 5.55147 5.61589 5.97891 6.47725 6.56208 7.10232 7.19011 7.85505 8.29989 9.10932 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014532 B = 0.004800 C = 0.004032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.256615 B = 5831.556529 C = 6943.377621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.070 4.070 3 C -0.021 4.021 4 C -0.154 4.154 5 C -0.214 4.214 6 S 0.190 5.810 7 C -0.302 4.302 8 C 0.584 3.416 9 O -0.560 6.560 10 N -0.699 5.699 11 C 0.144 3.856 12 H 0.083 0.917 13 C -0.114 4.114 14 C -0.122 4.122 15 C 0.158 3.842 16 N -0.603 5.603 17 C -0.338 4.338 18 H 0.065 0.935 19 C -0.074 4.074 20 N -0.947 5.947 21 Si 1.105 2.895 22 H -0.286 1.286 23 H -0.270 1.270 24 H -0.303 1.303 25 C 0.157 3.843 26 H 0.035 0.965 27 C -0.124 4.124 28 H 0.031 0.969 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.093 0.907 32 H 0.069 0.931 33 H 0.173 0.827 34 H 0.199 0.801 35 H 0.403 0.597 36 H 0.058 0.942 37 H 0.072 0.928 38 H 0.049 0.951 39 H 0.067 0.933 40 H 0.047 0.953 41 H 0.004 0.996 42 H 0.254 0.746 43 H 0.050 0.950 44 H 0.064 0.936 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.149 -8.279 -17.487 19.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.109 4.109 3 C -0.037 4.037 4 C -0.184 4.184 5 C -0.352 4.352 6 S 0.459 5.541 7 C -0.422 4.422 8 C 0.372 3.628 9 O -0.442 6.442 10 N -0.349 5.349 11 C 0.038 3.962 12 H 0.101 0.899 13 C -0.153 4.153 14 C -0.161 4.161 15 C 0.032 3.968 16 N -0.328 5.328 17 C -0.468 4.468 18 H 0.083 0.917 19 C -0.270 4.270 20 N -0.590 5.590 21 Si 0.931 3.069 22 H -0.213 1.213 23 H -0.195 1.195 24 H -0.230 1.230 25 C 0.051 3.949 26 H 0.053 0.947 27 C -0.182 4.182 28 H 0.051 0.949 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.111 0.889 32 H 0.087 0.913 33 H 0.190 0.810 34 H 0.216 0.784 35 H 0.239 0.761 36 H 0.077 0.923 37 H 0.090 0.910 38 H 0.068 0.932 39 H 0.085 0.915 40 H 0.066 0.934 41 H 0.022 0.978 42 H 0.064 0.936 43 H 0.069 0.931 44 H 0.083 0.917 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.085 -6.347 -16.405 17.859 hybrid contribution -0.992 -1.938 -0.260 2.192 sum -4.078 -8.285 -16.665 19.052 Atomic orbital electron populations 1.21541 0.94042 1.02134 1.01061 1.20397 0.96713 0.90371 1.03415 1.19821 0.95514 0.97660 0.90729 1.20138 1.03987 0.94264 1.00033 1.25684 1.06358 1.01699 1.01462 1.83611 1.59426 1.10822 1.00204 1.24459 1.19331 1.01184 0.97216 1.17220 0.77322 0.84715 0.83530 1.90717 1.47946 1.19778 1.85766 1.45859 1.66023 1.17081 1.05935 1.21419 0.97530 0.96094 0.81207 0.89884 1.21720 0.95112 0.97473 1.00983 1.21852 0.97568 0.96718 0.99926 1.20803 0.89195 0.93006 0.93784 1.44425 1.03408 1.05284 1.79714 1.20187 1.21235 0.84292 1.21063 0.91684 1.26896 0.99769 1.04923 0.95428 1.70861 1.47999 1.28313 1.11796 0.82972 0.76655 0.72760 0.74519 1.21253 1.19490 1.22995 1.20941 0.87802 0.90786 0.95408 0.94705 1.21660 0.96684 0.99431 1.00412 0.94926 0.91810 0.91366 0.88885 0.91285 0.81006 0.78351 0.76113 0.92304 0.90989 0.93228 0.91477 0.93438 0.97764 0.93593 0.93061 0.91719 0.93493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.81 9.77 71.98 0.70 -2.10 16 2 C -0.07 -1.58 5.50 29.85 0.16 -1.42 16 3 C -0.02 -0.51 5.16 -20.42 -0.11 -0.62 16 4 C -0.15 -2.84 9.96 21.08 0.21 -2.63 16 5 C -0.21 -3.85 10.92 66.81 0.73 -3.12 16 6 S 0.19 4.66 22.16 -56.49 -1.25 3.41 16 7 C -0.30 -8.72 6.45 24.07 0.16 -8.57 16 8 C 0.58 19.76 7.74 86.42 0.67 20.43 16 9 O -0.56 -20.75 13.37 -4.36 -0.06 -20.81 16 10 N -0.70 -24.06 3.47 -445.54 -1.55 -25.61 16 11 C 0.14 5.05 2.33 45.21 0.11 5.15 16 12 H 0.08 2.88 7.58 -2.38 -0.02 2.86 16 13 C -0.11 -3.91 5.57 30.62 0.17 -3.74 16 14 C -0.12 -4.53 5.93 30.67 0.18 -4.34 16 15 C 0.16 7.15 4.71 86.36 0.41 7.56 16 16 N -0.60 -27.66 2.50 -674.41 -1.69 -29.35 16 17 C -0.34 -17.12 8.52 84.03 0.72 -16.41 16 18 H 0.07 3.24 6.24 -2.91 -0.02 3.22 16 19 C -0.07 -3.95 4.66 84.86 0.40 -3.56 16 20 N -0.95 -55.71 12.42 21.65 0.27 -55.44 16 21 Si 1.10 48.82 29.99 68.60 2.06 50.87 16 22 H -0.29 -12.17 7.11 99.48 0.71 -11.47 16 23 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 24 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 25 C 0.16 6.14 3.22 45.12 0.15 6.28 16 26 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 27 C -0.12 -4.51 7.74 71.98 0.56 -3.96 16 28 H 0.03 0.87 7.59 -2.39 -0.02 0.86 16 29 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.09 1.56 8.12 -2.39 -0.02 1.54 16 32 H 0.07 1.95 6.33 -2.39 -0.02 1.93 16 33 H 0.17 2.09 8.06 -2.91 -0.02 2.07 16 34 H 0.20 2.21 8.06 -2.91 -0.02 2.19 16 35 H 0.40 14.54 6.90 -92.71 -0.64 13.90 16 36 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 37 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.05 1.91 7.53 -2.39 -0.02 1.90 16 39 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.05 2.46 6.31 -2.39 -0.02 2.44 16 41 H 0.00 0.21 7.88 -2.39 -0.02 0.19 16 42 H 0.25 15.28 6.77 -92.71 -0.63 14.65 16 43 H 0.05 1.87 6.43 -2.39 -0.02 1.86 16 44 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 45 H 0.05 1.85 7.60 -2.39 -0.02 1.83 16 Total: -1.00 -62.53 361.82 3.48 -59.05 By element: Atomic # 1 Polarization: 28.42 SS G_CDS: 0.50 Total: 28.92 kcal Atomic # 6 Polarization: -16.24 SS G_CDS: 5.20 Total: -11.03 kcal Atomic # 7 Polarization: -107.43 SS G_CDS: -2.97 Total: -110.40 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: -0.06 Total: -20.81 kcal Atomic # 14 Polarization: 48.82 SS G_CDS: 2.06 Total: 50.87 kcal Atomic # 16 Polarization: 4.66 SS G_CDS: -1.25 Total: 3.41 kcal Total: -62.53 3.48 -59.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994471030.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.412 kcal (2) G-P(sol) polarization free energy of solvation -62.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds