Wall clock time and date at job start Tue Mar 31 2020 13:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50696 * 109.47655 * 2 1 4 4 C 1.37477 * 123.35361 * 264.98044 * 3 2 1 5 5 C 1.33816 * 115.10147 * 180.28088 * 4 3 2 6 6 S 1.70614 * 110.95208 * 359.61761 * 5 4 3 7 7 C 1.36652 * 123.34868 * 85.01573 * 3 2 1 8 8 C 1.46578 * 125.45853 * 359.94502 * 7 3 2 9 9 O 1.21699 * 120.00379 * 0.02562 * 8 7 3 10 10 N 1.34774 * 119.99757 * 180.02562 * 8 7 3 11 11 C 1.46501 * 119.99988 * 180.02562 * 10 8 7 12 12 H 1.08996 * 109.50049 * 34.99469 * 11 10 8 13 13 C 1.53047 * 109.49426 * 274.92927 * 11 10 8 14 14 C 1.53098 * 109.50398 * 301.38178 * 13 11 10 15 15 C 1.53188 * 109.33157 * 298.65391 * 14 13 11 16 16 N 1.46923 * 108.77628 * 54.63609 * 15 14 13 17 17 C 1.36936 * 120.63179 * 126.40923 * 16 15 14 18 18 H 1.08000 * 120.00479 * 221.18639 * 17 16 15 19 19 C 1.38818 * 119.99928 * 41.18601 * 17 16 15 20 20 N 1.31618 * 119.99950 * 214.88893 * 19 17 16 21 21 Si 1.86798 * 119.99614 * 34.88467 * 19 17 16 22 22 H 1.48506 * 109.47158 * 84.62956 * 21 19 17 23 23 H 1.48503 * 109.46969 * 204.62259 * 21 19 17 24 24 H 1.48490 * 109.47482 * 324.62724 * 21 19 17 25 25 C 1.46921 * 118.74078 * 306.39475 * 16 15 14 26 26 H 1.08998 * 109.70392 * 293.75013 * 25 16 15 27 27 C 1.53002 * 109.59070 * 173.39226 * 25 16 15 28 28 H 1.08996 * 109.47122 * 59.99819 * 1 2 3 29 29 H 1.09002 * 109.47461 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46464 * 299.99829 * 1 2 3 31 31 H 1.09009 * 109.46913 * 240.00127 * 2 1 3 32 32 H 1.09007 * 109.47420 * 120.00569 * 2 1 3 33 33 H 1.07997 * 122.44363 * 0.02562 * 4 3 2 34 34 H 1.07995 * 124.51946 * 179.75404 * 5 4 3 35 35 H 0.97001 * 120.00510 * 359.97438 * 10 8 7 36 36 H 1.09006 * 109.45610 * 61.43691 * 13 11 10 37 37 H 1.08998 * 109.45674 * 181.39030 * 13 11 10 38 38 H 1.09006 * 109.48776 * 178.70023 * 14 13 11 39 39 H 1.09000 * 109.51706 * 58.63043 * 14 13 11 40 40 H 1.09001 * 109.58843 * 294.85074 * 15 14 13 41 41 H 1.09000 * 109.58733 * 174.42813 * 15 14 13 42 42 H 0.96998 * 119.99422 * 180.02562 * 20 19 17 43 43 H 1.08999 * 109.47123 * 300.70855 * 27 25 16 44 44 H 1.08995 * 109.47047 * 60.70777 * 27 25 16 45 45 H 1.08998 * 109.47197 * 180.70894 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3792 2.0998 -1.1439 5 6 2.8105 3.3520 -0.9521 6 16 2.7939 3.7557 0.7055 7 6 2.1894 2.1620 1.1372 8 6 1.8997 1.7024 2.4986 9 8 1.4829 0.5742 2.6842 10 7 2.0950 2.5293 3.5448 11 6 1.8060 2.0698 4.9055 12 1 2.0509 1.0113 4.9918 13 6 0.3204 2.2768 5.2098 14 6 -0.0310 3.7591 5.0566 15 6 0.7872 4.5803 6.0579 16 7 2.2118 4.2754 5.8674 17 6 3.1185 5.2801 5.6590 18 1 3.9026 5.1566 4.9266 19 6 3.0300 6.4575 6.3890 20 7 3.3496 7.6048 5.8288 21 14 2.4571 6.4134 8.1664 22 1 3.6106 6.1096 9.0510 23 1 1.8849 7.7333 8.5350 24 1 1.4204 5.3623 8.3265 25 6 2.6450 2.8720 5.9052 26 1 2.5016 2.4700 6.9081 27 6 4.1237 2.7812 5.5228 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8901 31 1 1.8933 -0.5139 -0.8901 32 1 1.8934 -0.5139 0.8900 33 1 2.3124 1.6538 -2.1252 34 1 3.1248 4.0187 -1.7414 35 1 2.4275 3.4285 3.3969 36 1 -0.2781 1.6872 4.5153 37 1 0.1110 1.9577 6.2308 38 1 -1.0940 3.9027 5.2508 39 1 0.2009 4.0854 4.0428 40 1 0.4903 4.3192 7.0737 41 1 0.6148 5.6428 5.8864 42 1 3.2881 8.4274 6.3392 43 1 4.2658 3.1882 4.5217 44 1 4.7189 3.3525 6.2351 45 1 4.4398 1.7382 5.5392 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000994471031.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:25 Heat of formation + Delta-G solvation = 8.149554 kcal Electronic energy + Delta-G solvation = -26338.022418 eV Core-core repulsion = 22868.326998 eV Total energy + Delta-G solvation = -3469.695420 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.95367 -38.52304 -37.20708 -33.97830 -32.72765 -32.58878 -31.79143 -30.44802 -28.89046 -26.46868 -25.26770 -24.83968 -22.56838 -22.30402 -21.40744 -20.67025 -18.99904 -18.67470 -17.96090 -16.52373 -15.91670 -15.51293 -15.07823 -15.00508 -14.79974 -14.10692 -14.02827 -13.87826 -13.57596 -13.40994 -13.31361 -13.04125 -12.80367 -12.52240 -12.35316 -12.14704 -11.86806 -11.78008 -11.44138 -11.33878 -11.22203 -10.96236 -10.78863 -10.66450 -10.58643 -10.55116 -10.28122 -9.96427 -9.69630 -9.56288 -9.49188 -8.85120 -8.51352 -8.40218 -8.37720 -6.77384 -6.14477 -3.45885 0.61067 1.59181 1.99239 2.43688 3.37317 3.46070 3.48212 3.53474 3.56506 4.53000 4.81800 4.87342 5.02424 5.15252 5.17856 5.26723 5.41024 5.43384 5.48699 5.50720 5.56627 5.71114 5.78069 5.81064 5.99879 6.02401 6.06018 6.12904 6.15021 6.29757 6.32472 6.35569 6.40850 6.42368 6.50052 6.55739 6.59151 6.78394 6.87536 6.91392 6.98341 7.09223 7.94080 7.97188 8.33644 8.53857 8.93514 9.65715 10.14387 11.00499 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017527 B = 0.004417 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.189660 B = 6337.785268 C = 7154.784500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.068 4.068 3 C -0.029 4.029 4 C -0.150 4.150 5 C -0.239 4.239 6 S 0.222 5.778 7 C -0.267 4.267 8 C 0.586 3.414 9 O -0.539 6.539 10 N -0.698 5.698 11 C 0.136 3.864 12 H 0.080 0.920 13 C -0.122 4.122 14 C -0.135 4.135 15 C 0.143 3.857 16 N -0.595 5.595 17 C -0.281 4.281 18 H 0.077 0.923 19 C 0.055 3.945 20 N -0.877 5.877 21 Si 0.843 3.157 22 H -0.289 1.289 23 H -0.298 1.298 24 H -0.260 1.260 25 C 0.154 3.846 26 H 0.042 0.958 27 C -0.134 4.134 28 H 0.046 0.954 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.094 0.906 33 H 0.140 0.860 34 H 0.166 0.834 35 H 0.408 0.592 36 H 0.055 0.945 37 H 0.063 0.937 38 H 0.050 0.950 39 H 0.060 0.940 40 H 0.025 0.975 41 H 0.067 0.933 42 H 0.263 0.737 43 H 0.055 0.945 44 H 0.066 0.934 45 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.155 -10.524 -11.092 15.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.108 4.108 3 C -0.044 4.044 4 C -0.181 4.181 5 C -0.377 4.377 6 S 0.492 5.508 7 C -0.387 4.387 8 C 0.372 3.628 9 O -0.420 6.420 10 N -0.349 5.349 11 C 0.030 3.970 12 H 0.098 0.902 13 C -0.160 4.160 14 C -0.174 4.174 15 C 0.017 3.983 16 N -0.320 5.320 17 C -0.408 4.408 18 H 0.095 0.905 19 C -0.149 4.149 20 N -0.515 5.515 21 Si 0.670 3.330 22 H -0.216 1.216 23 H -0.225 1.225 24 H -0.185 1.185 25 C 0.048 3.952 26 H 0.060 0.940 27 C -0.191 4.191 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.112 0.888 33 H 0.157 0.843 34 H 0.183 0.817 35 H 0.245 0.755 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.043 0.957 41 H 0.085 0.915 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.085 0.915 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -2.994 -9.733 -10.100 14.343 hybrid contribution -0.440 -0.463 0.042 0.640 sum -3.434 -10.196 -10.059 14.728 Atomic orbital electron populations 1.21592 0.94544 1.01445 1.01738 1.20363 0.96346 0.90799 1.03265 1.19454 0.97076 0.97403 0.90454 1.19853 1.04473 0.94345 0.99468 1.25311 1.08436 1.01414 1.02586 1.83652 1.58713 1.10742 0.97735 1.24615 1.16453 0.99788 0.97885 1.16929 0.77965 0.85110 0.82832 1.90732 1.46959 1.19161 1.85135 1.45918 1.65785 1.17119 1.06074 1.21511 0.95386 0.98640 0.81452 0.90158 1.21791 0.95991 0.97239 1.01006 1.22015 0.98772 0.95295 1.01343 1.21309 0.83786 0.98204 0.94953 1.44420 1.02326 1.00693 1.84524 1.18542 1.11868 0.92949 1.17461 0.90536 1.25570 0.96619 0.95249 0.97445 1.70068 1.48207 0.97562 1.35660 0.87384 0.79158 0.76988 0.89435 1.21593 1.22510 1.18489 1.20874 0.92942 0.86655 0.94737 0.94012 1.21748 0.95707 0.99261 1.02398 0.93442 0.92627 0.92121 0.91745 0.88758 0.84267 0.81653 0.75508 0.92581 0.91795 0.93093 0.92161 0.95742 0.91486 0.92683 0.92583 0.91515 0.94131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.78 37.16 0.36 -1.23 16 2 C -0.07 -0.84 5.50 -27.89 -0.15 -1.00 16 3 C -0.03 -0.38 5.16 -105.47 -0.54 -0.93 16 4 C -0.15 -1.70 9.96 -41.41 -0.41 -2.11 16 5 C -0.24 -2.66 10.92 29.18 0.32 -2.34 16 6 S 0.22 2.95 22.16 -107.50 -2.38 0.57 16 7 C -0.27 -3.99 6.45 -36.79 -0.24 -4.22 16 8 C 0.59 9.83 7.74 -12.90 -0.10 9.73 16 9 O -0.54 -9.83 13.38 5.19 0.07 -9.76 16 10 N -0.70 -11.80 3.46 -55.02 -0.19 -11.99 16 11 C 0.14 2.31 2.32 -67.80 -0.16 2.15 16 12 H 0.08 1.35 7.58 -51.93 -0.39 0.96 16 13 C -0.12 -2.00 5.58 -26.66 -0.15 -2.14 16 14 C -0.13 -2.35 5.93 -26.58 -0.16 -2.51 16 15 C 0.14 2.91 4.59 -3.71 -0.02 2.90 16 16 N -0.59 -12.76 2.12 -164.78 -0.35 -13.11 16 17 C -0.28 -7.00 8.43 -15.06 -0.13 -7.13 16 18 H 0.08 2.03 6.81 -52.49 -0.36 1.67 16 19 C 0.05 1.45 4.82 -17.43 -0.08 1.37 16 20 N -0.88 -24.83 13.97 55.49 0.78 -24.05 16 21 Si 0.84 20.49 27.40 -169.99 -4.66 15.83 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 24 H -0.26 -6.08 5.24 56.52 0.30 -5.78 16 25 C 0.15 2.87 3.20 -67.60 -0.22 2.65 16 26 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 27 C -0.13 -2.38 7.85 37.16 0.29 -2.09 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.85 7.60 -51.93 -0.39 0.45 16 31 H 0.06 0.65 8.12 -51.92 -0.42 0.23 16 32 H 0.09 1.35 6.33 -51.93 -0.33 1.02 16 33 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 34 H 0.17 1.39 8.06 -52.49 -0.42 0.97 16 35 H 0.41 7.26 6.88 -40.82 -0.28 6.98 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 1.10 7.53 -51.93 -0.39 0.71 16 40 H 0.02 0.51 6.71 -51.93 -0.35 0.16 16 41 H 0.07 1.49 7.02 -51.93 -0.36 1.12 16 42 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 43 H 0.06 1.03 6.35 -51.93 -0.33 0.70 16 44 H 0.07 1.28 7.71 -51.93 -0.40 0.88 16 45 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 360.25 15.07 5.43 5.43 Total: -1.00 -28.09 360.25 -9.74 -37.83 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -7.06 Total: 6.14 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: -1.38 Total: -6.90 kcal Atomic # 7 Polarization: -49.38 SS G_CDS: 0.23 Total: -49.15 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.07 Total: -9.76 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -4.66 Total: 15.83 kcal Atomic # 16 Polarization: 2.95 SS G_CDS: -2.38 Total: 0.57 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -28.09 -9.74 -37.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994471031.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.979 kcal (2) G-P(sol) polarization free energy of solvation -28.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds