Wall clock time and date at job start Tue Mar 31 2020 13:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50696 * 109.47655 * 2 1 4 4 C 1.37477 * 123.35361 * 264.98044 * 3 2 1 5 5 C 1.33816 * 115.10147 * 180.28088 * 4 3 2 6 6 S 1.70614 * 110.95208 * 359.61761 * 5 4 3 7 7 C 1.36652 * 123.34868 * 85.01573 * 3 2 1 8 8 C 1.46578 * 125.45853 * 359.94502 * 7 3 2 9 9 O 1.21699 * 120.00379 * 0.02562 * 8 7 3 10 10 N 1.34774 * 119.99757 * 180.02562 * 8 7 3 11 11 C 1.46501 * 119.99988 * 180.02562 * 10 8 7 12 12 H 1.08996 * 109.50049 * 34.99469 * 11 10 8 13 13 C 1.53047 * 109.49426 * 274.92927 * 11 10 8 14 14 C 1.53098 * 109.50398 * 301.38178 * 13 11 10 15 15 C 1.53188 * 109.33157 * 298.65391 * 14 13 11 16 16 N 1.46923 * 108.77628 * 54.63609 * 15 14 13 17 17 C 1.36936 * 120.63179 * 126.40923 * 16 15 14 18 18 H 1.08000 * 120.00479 * 221.18639 * 17 16 15 19 19 C 1.38818 * 119.99928 * 41.18601 * 17 16 15 20 20 N 1.31618 * 119.99950 * 214.88893 * 19 17 16 21 21 Si 1.86798 * 119.99614 * 34.88467 * 19 17 16 22 22 H 1.48506 * 109.47158 * 84.62956 * 21 19 17 23 23 H 1.48503 * 109.46969 * 204.62259 * 21 19 17 24 24 H 1.48490 * 109.47482 * 324.62724 * 21 19 17 25 25 C 1.46921 * 118.74078 * 306.39475 * 16 15 14 26 26 H 1.08998 * 109.70392 * 293.75013 * 25 16 15 27 27 C 1.53002 * 109.59070 * 173.39226 * 25 16 15 28 28 H 1.08996 * 109.47122 * 59.99819 * 1 2 3 29 29 H 1.09002 * 109.47461 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46464 * 299.99829 * 1 2 3 31 31 H 1.09009 * 109.46913 * 240.00127 * 2 1 3 32 32 H 1.09007 * 109.47420 * 120.00569 * 2 1 3 33 33 H 1.07997 * 122.44363 * 0.02562 * 4 3 2 34 34 H 1.07995 * 124.51946 * 179.75404 * 5 4 3 35 35 H 0.97001 * 120.00510 * 359.97438 * 10 8 7 36 36 H 1.09006 * 109.45610 * 61.43691 * 13 11 10 37 37 H 1.08998 * 109.45674 * 181.39030 * 13 11 10 38 38 H 1.09006 * 109.48776 * 178.70023 * 14 13 11 39 39 H 1.09000 * 109.51706 * 58.63043 * 14 13 11 40 40 H 1.09001 * 109.58843 * 294.85074 * 15 14 13 41 41 H 1.09000 * 109.58733 * 174.42813 * 15 14 13 42 42 H 0.96998 * 119.99422 * 180.02562 * 20 19 17 43 43 H 1.08999 * 109.47123 * 300.70855 * 27 25 16 44 44 H 1.08995 * 109.47047 * 60.70777 * 27 25 16 45 45 H 1.08998 * 109.47197 * 180.70894 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3792 2.0998 -1.1439 5 6 2.8105 3.3520 -0.9521 6 16 2.7939 3.7557 0.7055 7 6 2.1894 2.1620 1.1372 8 6 1.8997 1.7024 2.4986 9 8 1.4829 0.5742 2.6842 10 7 2.0950 2.5293 3.5448 11 6 1.8060 2.0698 4.9055 12 1 2.0509 1.0113 4.9918 13 6 0.3204 2.2768 5.2098 14 6 -0.0310 3.7591 5.0566 15 6 0.7872 4.5803 6.0579 16 7 2.2118 4.2754 5.8674 17 6 3.1185 5.2801 5.6590 18 1 3.9026 5.1566 4.9266 19 6 3.0300 6.4575 6.3890 20 7 3.3496 7.6048 5.8288 21 14 2.4571 6.4134 8.1664 22 1 3.6106 6.1096 9.0510 23 1 1.8849 7.7333 8.5350 24 1 1.4204 5.3623 8.3265 25 6 2.6450 2.8720 5.9052 26 1 2.5016 2.4700 6.9081 27 6 4.1237 2.7812 5.5228 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8901 31 1 1.8933 -0.5139 -0.8901 32 1 1.8934 -0.5139 0.8900 33 1 2.3124 1.6538 -2.1252 34 1 3.1248 4.0187 -1.7414 35 1 2.4275 3.4285 3.3969 36 1 -0.2781 1.6872 4.5153 37 1 0.1110 1.9577 6.2308 38 1 -1.0940 3.9027 5.2508 39 1 0.2009 4.0854 4.0428 40 1 0.4903 4.3192 7.0737 41 1 0.6148 5.6428 5.8864 42 1 3.2881 8.4274 6.3392 43 1 4.2658 3.1882 4.5217 44 1 4.7189 3.3525 6.2351 45 1 4.4398 1.7382 5.5392 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000994471031.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:25 Heat of formation + Delta-G solvation = -6.207114 kcal Electronic energy + Delta-G solvation = -26338.644970 eV Core-core repulsion = 22868.326998 eV Total energy + Delta-G solvation = -3470.317972 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.26247 -39.76600 -38.48193 -35.57052 -34.22581 -33.63261 -33.46351 -31.98483 -30.04214 -27.96002 -26.69120 -26.22389 -24.07377 -23.27736 -22.73151 -22.19632 -20.44966 -19.90128 -19.03169 -18.31546 -17.18220 -16.88925 -16.68883 -16.30982 -16.07199 -15.72485 -15.21307 -15.05117 -15.02321 -14.76297 -14.45034 -14.40452 -14.29868 -13.90708 -13.82728 -13.47810 -13.21717 -12.86244 -12.80847 -12.75527 -12.63999 -12.35828 -12.33567 -12.15703 -11.94052 -11.90604 -11.58834 -11.54434 -11.45124 -11.13128 -10.82556 -10.42864 -10.04706 -9.66106 -9.41683 -8.59487 -8.20083 -5.46197 -0.41269 0.57413 1.02725 1.40809 1.46410 1.49822 1.56213 2.24163 2.29261 2.52212 3.00845 3.40056 3.83727 3.92596 4.01420 4.03443 4.14158 4.21600 4.31513 4.35964 4.50536 4.52126 4.57279 4.62697 4.67588 4.80763 4.89585 4.91007 4.93801 4.97328 5.08080 5.09833 5.12180 5.13987 5.25775 5.30309 5.35891 5.43358 5.45676 5.49174 5.57614 5.68196 5.98995 6.31942 6.60237 7.05508 7.23205 7.70323 8.21141 8.98917 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017527 B = 0.004417 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.189660 B = 6337.785268 C = 7154.784500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.069 4.069 3 C -0.022 4.022 4 C -0.153 4.153 5 C -0.218 4.218 6 S 0.188 5.812 7 C -0.300 4.300 8 C 0.585 3.415 9 O -0.559 6.559 10 N -0.701 5.701 11 C 0.141 3.859 12 H 0.086 0.914 13 C -0.115 4.115 14 C -0.124 4.124 15 C 0.142 3.858 16 N -0.602 5.602 17 C -0.253 4.253 18 H 0.054 0.946 19 C 0.006 3.994 20 N -0.922 5.922 21 Si 0.894 3.106 22 H -0.297 1.297 23 H -0.308 1.308 24 H -0.243 1.243 25 C 0.153 3.847 26 H 0.054 0.946 27 C -0.127 4.127 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.031 0.969 31 H 0.092 0.908 32 H 0.071 0.929 33 H 0.172 0.828 34 H 0.197 0.803 35 H 0.402 0.598 36 H 0.057 0.943 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.046 0.954 40 H 0.030 0.970 41 H 0.043 0.957 42 H 0.260 0.740 43 H 0.044 0.956 44 H 0.049 0.951 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.033 -12.413 -12.422 18.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.108 4.108 3 C -0.039 4.039 4 C -0.184 4.184 5 C -0.355 4.355 6 S 0.457 5.543 7 C -0.420 4.420 8 C 0.373 3.627 9 O -0.441 6.441 10 N -0.351 5.351 11 C 0.035 3.965 12 H 0.104 0.896 13 C -0.154 4.154 14 C -0.163 4.163 15 C 0.017 3.983 16 N -0.327 5.327 17 C -0.383 4.383 18 H 0.071 0.929 19 C -0.193 4.193 20 N -0.564 5.564 21 Si 0.722 3.278 22 H -0.225 1.225 23 H -0.235 1.235 24 H -0.167 1.167 25 C 0.047 3.953 26 H 0.071 0.929 27 C -0.185 4.185 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.051 0.949 31 H 0.111 0.889 32 H 0.090 0.910 33 H 0.190 0.810 34 H 0.214 0.786 35 H 0.238 0.762 36 H 0.076 0.924 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.065 0.935 40 H 0.048 0.952 41 H 0.062 0.938 42 H 0.069 0.931 43 H 0.063 0.937 44 H 0.068 0.932 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.893 -11.664 -11.419 16.780 hybrid contribution -0.144 0.041 0.314 0.348 sum -4.037 -11.623 -11.105 16.574 Atomic orbital electron populations 1.21541 0.94138 1.02123 1.00986 1.20395 0.96616 0.90268 1.03503 1.19822 0.95625 0.97753 0.90664 1.20144 1.03891 0.94230 1.00107 1.25671 1.06628 1.01720 1.01517 1.83803 1.59551 1.10699 1.00279 1.24508 1.19203 1.00860 0.97459 1.17168 0.77336 0.84720 0.83493 1.90712 1.47961 1.19809 1.85619 1.45926 1.66038 1.16852 1.06236 1.21424 0.95526 0.98419 0.81141 0.89598 1.21747 0.95385 0.96270 1.01960 1.21878 0.99501 0.95433 0.99526 1.21298 0.83497 0.97489 0.96034 1.44487 1.02416 1.01289 1.84549 1.18444 1.10944 0.93301 1.15575 0.92865 1.25994 0.98115 0.95189 1.00016 1.70151 1.51567 0.98055 1.36627 0.86554 0.78711 0.76783 0.85723 1.22515 1.23523 1.16697 1.21016 0.93560 0.84883 0.95838 0.92884 1.21672 0.95162 1.00507 1.01114 0.91992 0.91285 0.94948 0.88908 0.91049 0.81023 0.78587 0.76184 0.92435 0.90228 0.90879 0.93477 0.95202 0.93791 0.93059 0.93721 0.93218 0.91587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.84 9.78 71.98 0.70 -2.14 16 2 C -0.07 -1.56 5.50 29.85 0.16 -1.39 16 3 C -0.02 -0.56 5.16 -20.42 -0.11 -0.66 16 4 C -0.15 -2.98 9.96 21.08 0.21 -2.77 16 5 C -0.22 -4.25 10.92 66.81 0.73 -3.52 16 6 S 0.19 4.92 22.16 -56.49 -1.25 3.67 16 7 C -0.30 -8.84 6.45 24.08 0.16 -8.69 16 8 C 0.59 19.61 7.74 86.42 0.67 20.28 16 9 O -0.56 -20.27 13.38 -4.35 -0.06 -20.33 16 10 N -0.70 -23.62 3.46 -446.22 -1.55 -25.17 16 11 C 0.14 4.61 2.32 45.07 0.10 4.72 16 12 H 0.09 2.76 7.58 -2.39 -0.02 2.74 16 13 C -0.12 -3.55 5.58 30.64 0.17 -3.38 16 14 C -0.12 -4.16 5.93 30.69 0.18 -3.97 16 15 C 0.14 5.65 4.59 86.36 0.40 6.04 16 16 N -0.60 -25.60 2.12 -675.24 -1.43 -27.04 16 17 C -0.25 -12.86 8.43 84.04 0.71 -12.15 16 18 H 0.05 2.93 6.81 -2.91 -0.02 2.91 16 19 C 0.01 0.33 4.82 84.86 0.41 0.74 16 20 N -0.92 -53.86 13.97 21.65 0.30 -53.56 16 21 Si 0.89 42.80 27.40 68.60 1.88 44.67 16 22 H -0.30 -14.53 7.11 99.48 0.71 -13.83 16 23 H -0.31 -15.12 7.11 99.48 0.71 -14.42 16 24 H -0.24 -10.79 5.24 99.48 0.52 -10.27 16 25 C 0.15 5.50 3.20 44.98 0.14 5.64 16 26 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 27 C -0.13 -4.47 7.85 71.98 0.56 -3.90 16 28 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.07 1.29 8.14 -2.39 -0.02 1.28 16 30 H 0.03 0.88 7.60 -2.39 -0.02 0.86 16 31 H 0.09 1.56 8.12 -2.38 -0.02 1.55 16 32 H 0.07 1.98 6.33 -2.38 -0.02 1.97 16 33 H 0.17 2.24 8.06 -2.91 -0.02 2.21 16 34 H 0.20 2.56 8.06 -2.91 -0.02 2.53 16 35 H 0.40 14.60 6.88 -92.71 -0.64 13.96 16 36 H 0.06 1.79 8.14 -2.38 -0.02 1.78 16 37 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 39 H 0.05 1.70 7.53 -2.39 -0.02 1.68 16 40 H 0.03 1.17 6.71 -2.39 -0.02 1.16 16 41 H 0.04 1.95 7.02 -2.39 -0.02 1.93 16 42 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 43 H 0.04 1.66 6.35 -2.39 -0.02 1.64 16 44 H 0.05 1.90 7.71 -2.39 -0.02 1.88 16 45 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -61.48 360.25 3.27 -58.21 By element: Atomic # 1 Polarization: 24.53 SS G_CDS: 0.17 Total: 24.69 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: 5.21 Total: -5.17 kcal Atomic # 7 Polarization: -103.09 SS G_CDS: -2.68 Total: -105.76 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: -0.06 Total: -20.33 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 1.88 Total: 44.67 kcal Atomic # 16 Polarization: 4.92 SS G_CDS: -1.25 Total: 3.67 kcal Total: -61.48 3.27 -58.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994471031.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.005 kcal (2) G-P(sol) polarization free energy of solvation -61.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds