Wall clock time and date at job start Tue Mar 31 2020 13:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50709 * 109.47146 * 2 1 4 4 C 1.37470 * 123.35009 * 265.02524 * 3 2 1 5 5 C 1.33815 * 115.09907 * 179.97438 * 4 3 2 6 6 S 1.70624 * 110.95498 * 359.72838 * 5 4 3 7 7 C 1.36650 * 123.34914 * 84.99705 * 3 2 1 8 8 C 1.46582 * 125.45855 * 0.02562 * 7 3 2 9 9 O 1.21696 * 120.00409 * 0.02562 * 8 7 3 10 10 N 1.34780 * 119.99816 * 179.97438 * 8 7 3 11 11 C 1.46501 * 119.99754 * 180.02562 * 10 8 7 12 12 H 1.09002 * 109.49736 * 35.07021 * 11 10 8 13 13 C 1.53041 * 109.49575 * 275.00127 * 11 10 8 14 14 C 1.53041 * 109.52422 * 178.66335 * 13 11 10 15 15 C 1.53161 * 109.33159 * 61.36898 * 14 13 11 16 16 N 1.46925 * 108.76786 * 305.35682 * 15 14 13 17 17 C 1.36934 * 120.63369 * 233.62967 * 16 15 14 18 18 H 1.07997 * 120.00636 * 150.14825 * 17 16 15 19 19 C 1.38814 * 119.99812 * 330.14196 * 17 16 15 20 20 N 1.31627 * 119.99987 * 344.50422 * 19 17 16 21 21 Si 1.86799 * 119.99883 * 164.49814 * 19 17 16 22 22 H 1.48505 * 109.47105 * 90.00789 * 21 19 17 23 23 H 1.48505 * 109.47268 * 210.00080 * 21 19 17 24 24 H 1.48493 * 109.47507 * 330.00306 * 21 19 17 25 25 C 1.46925 * 118.73977 * 53.61198 * 16 15 14 26 26 H 1.09002 * 109.59047 * 66.17207 * 25 16 15 27 27 C 1.52997 * 109.58819 * 186.60624 * 25 16 15 28 28 H 1.09000 * 109.46922 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47368 * 300.00092 * 1 2 3 30 30 H 1.09003 * 109.47197 * 59.99953 * 1 2 3 31 31 H 1.09003 * 109.47665 * 240.00067 * 2 1 3 32 32 H 1.08999 * 109.47311 * 119.99551 * 2 1 3 33 33 H 1.07996 * 122.44880 * 359.97438 * 4 3 2 34 34 H 1.08006 * 124.52478 * 180.02562 * 5 4 3 35 35 H 0.96995 * 120.00002 * 0.02562 * 10 8 7 36 36 H 1.08999 * 109.45953 * 298.66802 * 13 11 10 37 37 H 1.08993 * 109.46213 * 58.64395 * 13 11 10 38 38 H 1.08995 * 109.49929 * 181.30902 * 14 13 11 39 39 H 1.08999 * 109.49560 * 301.40401 * 14 13 11 40 40 H 1.08998 * 109.59420 * 185.57255 * 15 14 13 41 41 H 1.09002 * 109.70837 * 65.20970 * 15 14 13 42 42 H 0.96996 * 119.99377 * 179.97438 * 20 19 17 43 43 H 1.09007 * 109.47178 * 179.28709 * 27 25 16 44 44 H 1.09003 * 109.47200 * 299.28433 * 27 25 16 45 45 H 1.08993 * 109.47620 * 59.28412 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3781 2.1002 -1.1440 5 6 2.8033 3.3545 -0.9527 6 16 2.7847 3.7591 0.7048 7 6 2.1889 2.1623 1.1371 8 6 1.9004 1.7023 2.4987 9 8 1.4851 0.5736 2.6845 10 7 2.0960 2.5291 3.5450 11 6 1.8082 2.0691 4.9058 12 1 2.0550 1.0109 4.9919 13 6 0.3225 2.2737 5.2106 14 6 0.0144 1.7627 6.6199 15 6 0.8314 2.5625 7.6390 16 7 2.2512 2.4899 7.2682 17 6 3.1888 2.0733 8.1750 18 1 4.0815 1.5688 7.8359 19 6 2.9920 2.2995 9.5304 20 7 2.0827 3.1641 9.9281 21 14 4.0175 1.3767 10.7899 22 1 5.2466 2.1534 11.0924 23 1 3.2278 1.1955 12.0344 24 1 4.3934 0.0478 10.2443 25 6 2.6459 2.8725 5.9056 26 1 2.4675 3.9378 5.7590 27 6 4.1298 2.5643 5.6958 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.3115 1.6542 -2.1253 34 1 3.1122 4.0233 -1.7426 35 1 2.4274 3.4286 3.3969 36 1 0.0819 3.3350 5.1485 37 1 -0.2762 1.7226 4.4855 38 1 -1.0483 1.8873 6.8278 39 1 0.2780 0.7074 6.6899 40 1 0.6914 2.1385 8.6333 41 1 0.5057 3.6027 7.6362 42 1 1.9450 3.3218 10.8752 43 1 4.4175 2.8371 4.6805 44 1 4.7240 3.1368 6.4081 45 1 4.3050 1.4996 5.8495 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000994471033.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:30 Heat of formation + Delta-G solvation = 4.744601 kcal Electronic energy + Delta-G solvation = -25677.937601 eV Core-core repulsion = 22208.094530 eV Total energy + Delta-G solvation = -3469.843070 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.98136 -38.48054 -37.27209 -34.32833 -32.81635 -32.58969 -31.70974 -30.00728 -28.69028 -26.30980 -25.36342 -24.90728 -22.59495 -22.40492 -20.83139 -20.69582 -19.68637 -18.53805 -18.18741 -16.39259 -16.03350 -15.65803 -15.18765 -14.99292 -14.71175 -14.15740 -13.88036 -13.80919 -13.72532 -13.47061 -13.34516 -13.06521 -12.73301 -12.57233 -12.45546 -12.00713 -11.71808 -11.59084 -11.51565 -11.15060 -11.08016 -10.93015 -10.80306 -10.73270 -10.56583 -10.29791 -10.13400 -10.04321 -9.87636 -9.59533 -9.36725 -9.00918 -8.65063 -8.60924 -8.44809 -6.66697 -5.79879 -3.24400 0.40291 1.34089 1.73008 2.26017 3.31244 3.33498 3.37499 3.44826 3.47955 4.49041 4.64142 4.83034 5.01145 5.07534 5.26587 5.30373 5.39339 5.41162 5.51754 5.57294 5.60117 5.68624 5.79332 5.86418 5.95730 5.99142 6.07490 6.14882 6.21443 6.30204 6.32715 6.39780 6.43739 6.53403 6.63202 6.71668 6.75357 6.85509 6.98629 7.06921 7.39657 7.66202 7.70646 7.81806 8.36298 8.45406 9.19965 9.82497 10.39275 11.28908 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.021800 B = 0.003226 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.094314 B = 8677.290752 C = 9073.770345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.071 4.071 3 C -0.024 4.024 4 C -0.145 4.145 5 C -0.233 4.233 6 S 0.193 5.807 7 C -0.262 4.262 8 C 0.587 3.413 9 O -0.525 6.525 10 N -0.714 5.714 11 C 0.132 3.868 12 H 0.088 0.912 13 C -0.117 4.117 14 C -0.139 4.139 15 C 0.170 3.830 16 N -0.581 5.581 17 C -0.253 4.253 18 H 0.070 0.930 19 C 0.005 3.995 20 N -0.902 5.902 21 Si 0.901 3.099 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.279 1.279 25 C 0.167 3.833 26 H 0.027 0.973 27 C -0.137 4.137 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.047 0.953 31 H 0.066 0.934 32 H 0.096 0.904 33 H 0.142 0.858 34 H 0.167 0.833 35 H 0.392 0.608 36 H 0.053 0.947 37 H 0.050 0.950 38 H 0.051 0.949 39 H 0.057 0.943 40 H 0.087 0.913 41 H 0.019 0.981 42 H 0.253 0.747 43 H 0.037 0.963 44 H 0.064 0.936 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.769 0.779 -21.326 21.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.111 4.111 3 C -0.039 4.039 4 C -0.177 4.177 5 C -0.371 4.371 6 S 0.462 5.538 7 C -0.382 4.382 8 C 0.372 3.628 9 O -0.403 6.403 10 N -0.364 5.364 11 C 0.027 3.973 12 H 0.107 0.893 13 C -0.155 4.155 14 C -0.179 4.179 15 C 0.044 3.956 16 N -0.305 5.305 17 C -0.382 4.382 18 H 0.088 0.912 19 C -0.194 4.194 20 N -0.546 5.546 21 Si 0.731 3.269 22 H -0.214 1.214 23 H -0.216 1.216 24 H -0.204 1.204 25 C 0.059 3.941 26 H 0.045 0.955 27 C -0.194 4.194 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.114 0.886 33 H 0.160 0.840 34 H 0.184 0.816 35 H 0.226 0.774 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.105 0.895 41 H 0.037 0.963 42 H 0.063 0.937 43 H 0.056 0.944 44 H 0.083 0.917 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.702 1.374 -20.140 20.199 hybrid contribution 0.299 -1.006 -0.434 1.136 sum -0.403 0.367 -20.573 20.581 Atomic orbital electron populations 1.21595 0.94339 1.01733 1.01707 1.20408 0.96500 0.90589 1.03559 1.19526 0.96436 0.97549 0.90424 1.19909 1.03907 0.94259 0.99633 1.25222 1.08584 1.01388 1.01901 1.83077 1.60427 1.11564 0.98738 1.24604 1.16339 0.99326 0.97949 1.16898 0.78044 0.85216 0.82613 1.90784 1.45869 1.18808 1.84886 1.46052 1.66910 1.16273 1.07173 1.21833 0.95721 1.00814 0.78922 0.89349 1.21764 0.95565 1.00465 0.97752 1.22171 0.99386 1.01087 0.95279 1.20820 0.81952 0.96000 0.96795 1.44022 1.03066 1.76744 1.06619 1.19150 1.02178 1.30338 0.86577 0.91242 1.25084 0.98831 0.97567 0.97876 1.70030 1.36106 1.33839 1.14592 0.86323 0.79591 0.79884 0.81133 1.21406 1.21579 1.20417 1.20566 0.92425 0.94720 0.86363 0.95513 1.21821 0.96337 1.02130 0.99152 0.92390 0.92086 0.93425 0.91530 0.88571 0.83999 0.81560 0.77435 0.92782 0.93102 0.92990 0.92469 0.89482 0.96260 0.93655 0.94364 0.91701 0.92586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.78 37.15 0.36 -1.15 16 2 C -0.07 -0.82 5.50 -27.88 -0.15 -0.97 16 3 C -0.02 -0.29 5.16 -105.47 -0.54 -0.83 16 4 C -0.15 -1.37 9.96 -41.41 -0.41 -1.79 16 5 C -0.23 -1.99 10.92 29.18 0.32 -1.67 16 6 S 0.19 1.89 22.16 -107.50 -2.38 -0.50 16 7 C -0.26 -3.39 6.45 -36.79 -0.24 -3.62 16 8 C 0.59 9.20 7.74 -12.89 -0.10 9.10 16 9 O -0.52 -9.64 13.38 5.19 0.07 -9.57 16 10 N -0.71 -10.90 4.57 -55.02 -0.25 -11.15 16 11 C 0.13 2.41 1.99 -67.81 -0.14 2.28 16 12 H 0.09 1.84 7.58 -51.93 -0.39 1.44 16 13 C -0.12 -2.11 5.46 -26.69 -0.15 -2.26 16 14 C -0.14 -2.74 6.08 -26.63 -0.16 -2.90 16 15 C 0.17 4.00 5.28 -3.73 -0.02 3.98 16 16 N -0.58 -14.10 2.99 -164.79 -0.49 -14.60 16 17 C -0.25 -6.70 8.58 -15.06 -0.13 -6.83 16 18 H 0.07 1.81 6.23 -52.49 -0.33 1.48 16 19 C 0.01 0.14 4.94 -17.43 -0.09 0.06 16 20 N -0.90 -25.65 11.23 55.49 0.62 -25.03 16 21 Si 0.90 21.44 29.58 -169.99 -5.03 16.41 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 C 0.17 3.37 3.03 -67.60 -0.21 3.16 16 26 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 27 C -0.14 -2.55 7.84 37.16 0.29 -2.26 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.81 7.60 -51.93 -0.39 0.42 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.62 8.12 -51.93 -0.42 0.19 16 32 H 0.10 1.33 6.32 -51.93 -0.33 1.01 16 33 H 0.14 1.03 8.06 -52.49 -0.42 0.60 16 34 H 0.17 0.97 8.06 -52.48 -0.42 0.54 16 35 H 0.39 5.17 7.72 -40.82 -0.32 4.86 16 36 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.09 2.29 6.15 -51.93 -0.32 1.97 16 41 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 43 H 0.04 0.59 7.79 -51.93 -0.40 0.19 16 44 H 0.06 1.28 7.67 -51.93 -0.40 0.88 16 45 H 0.06 1.10 7.40 -51.93 -0.38 0.71 16 LS Contribution 366.09 15.07 5.52 5.52 Total: -1.00 -29.81 366.09 -10.35 -40.16 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -7.05 Total: 4.46 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: -1.36 Total: -5.72 kcal Atomic # 7 Polarization: -50.65 SS G_CDS: -0.12 Total: -50.77 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.07 Total: -9.57 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.41 kcal Atomic # 16 Polarization: 1.89 SS G_CDS: -2.38 Total: -0.50 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.81 -10.35 -40.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994471033.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.908 kcal (2) G-P(sol) polarization free energy of solvation -29.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds