Wall clock time and date at job start Tue Mar 31 2020 13:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50709 * 109.47146 * 2 1 4 4 C 1.37470 * 123.35009 * 265.02524 * 3 2 1 5 5 C 1.33815 * 115.09907 * 179.97438 * 4 3 2 6 6 S 1.70624 * 110.95498 * 359.72838 * 5 4 3 7 7 C 1.36650 * 123.34914 * 84.99705 * 3 2 1 8 8 C 1.46582 * 125.45855 * 0.02562 * 7 3 2 9 9 O 1.21696 * 120.00409 * 0.02562 * 8 7 3 10 10 N 1.34780 * 119.99816 * 179.97438 * 8 7 3 11 11 C 1.46501 * 119.99754 * 180.02562 * 10 8 7 12 12 H 1.09002 * 109.49736 * 35.07021 * 11 10 8 13 13 C 1.53041 * 109.49575 * 275.00127 * 11 10 8 14 14 C 1.53041 * 109.52422 * 178.66335 * 13 11 10 15 15 C 1.53161 * 109.33159 * 61.36898 * 14 13 11 16 16 N 1.46925 * 108.76786 * 305.35682 * 15 14 13 17 17 C 1.36934 * 120.63369 * 233.62967 * 16 15 14 18 18 H 1.07997 * 120.00636 * 150.14825 * 17 16 15 19 19 C 1.38814 * 119.99812 * 330.14196 * 17 16 15 20 20 N 1.31627 * 119.99987 * 344.50422 * 19 17 16 21 21 Si 1.86799 * 119.99883 * 164.49814 * 19 17 16 22 22 H 1.48505 * 109.47105 * 90.00789 * 21 19 17 23 23 H 1.48505 * 109.47268 * 210.00080 * 21 19 17 24 24 H 1.48493 * 109.47507 * 330.00306 * 21 19 17 25 25 C 1.46925 * 118.73977 * 53.61198 * 16 15 14 26 26 H 1.09002 * 109.59047 * 66.17207 * 25 16 15 27 27 C 1.52997 * 109.58819 * 186.60624 * 25 16 15 28 28 H 1.09000 * 109.46922 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47368 * 300.00092 * 1 2 3 30 30 H 1.09003 * 109.47197 * 59.99953 * 1 2 3 31 31 H 1.09003 * 109.47665 * 240.00067 * 2 1 3 32 32 H 1.08999 * 109.47311 * 119.99551 * 2 1 3 33 33 H 1.07996 * 122.44880 * 359.97438 * 4 3 2 34 34 H 1.08006 * 124.52478 * 180.02562 * 5 4 3 35 35 H 0.96995 * 120.00002 * 0.02562 * 10 8 7 36 36 H 1.08999 * 109.45953 * 298.66802 * 13 11 10 37 37 H 1.08993 * 109.46213 * 58.64395 * 13 11 10 38 38 H 1.08995 * 109.49929 * 181.30902 * 14 13 11 39 39 H 1.08999 * 109.49560 * 301.40401 * 14 13 11 40 40 H 1.08998 * 109.59420 * 185.57255 * 15 14 13 41 41 H 1.09002 * 109.70837 * 65.20970 * 15 14 13 42 42 H 0.96996 * 119.99377 * 179.97438 * 20 19 17 43 43 H 1.09007 * 109.47178 * 179.28709 * 27 25 16 44 44 H 1.09003 * 109.47200 * 299.28433 * 27 25 16 45 45 H 1.08993 * 109.47620 * 59.28412 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3781 2.1002 -1.1440 5 6 2.8033 3.3545 -0.9527 6 16 2.7847 3.7591 0.7048 7 6 2.1889 2.1623 1.1371 8 6 1.9004 1.7023 2.4987 9 8 1.4851 0.5736 2.6845 10 7 2.0960 2.5291 3.5450 11 6 1.8082 2.0691 4.9058 12 1 2.0550 1.0109 4.9919 13 6 0.3225 2.2737 5.2106 14 6 0.0144 1.7627 6.6199 15 6 0.8314 2.5625 7.6390 16 7 2.2512 2.4899 7.2682 17 6 3.1888 2.0733 8.1750 18 1 4.0815 1.5688 7.8359 19 6 2.9920 2.2995 9.5304 20 7 2.0827 3.1641 9.9281 21 14 4.0175 1.3767 10.7899 22 1 5.2466 2.1534 11.0924 23 1 3.2278 1.1955 12.0344 24 1 4.3934 0.0478 10.2443 25 6 2.6459 2.8725 5.9056 26 1 2.4675 3.9378 5.7590 27 6 4.1298 2.5643 5.6958 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.3115 1.6542 -2.1253 34 1 3.1122 4.0233 -1.7426 35 1 2.4274 3.4286 3.3969 36 1 0.0819 3.3350 5.1485 37 1 -0.2762 1.7226 4.4855 38 1 -1.0483 1.8873 6.8278 39 1 0.2780 0.7074 6.6899 40 1 0.6914 2.1385 8.6333 41 1 0.5057 3.6027 7.6362 42 1 1.9450 3.3218 10.8752 43 1 4.4175 2.8371 4.6805 44 1 4.7240 3.1368 6.4081 45 1 4.3050 1.4996 5.8495 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000994471033.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:29 Heat of formation + Delta-G solvation = -11.878376 kcal Electronic energy + Delta-G solvation = -25678.658427 eV Core-core repulsion = 22208.094530 eV Total energy + Delta-G solvation = -3470.563897 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.21118 -39.69916 -38.56456 -35.89761 -34.30760 -33.65628 -33.42469 -31.46676 -29.93245 -27.88305 -26.91847 -26.20865 -24.04631 -23.27445 -22.39085 -22.09551 -21.23939 -19.75896 -19.09487 -18.23025 -17.25559 -16.99089 -16.62465 -16.24719 -15.96450 -15.60195 -15.44158 -15.08141 -14.98162 -14.72861 -14.60242 -14.41608 -14.26284 -13.84887 -13.36410 -13.33380 -13.17341 -12.83015 -12.80185 -12.73735 -12.52422 -12.40240 -12.38735 -12.03361 -11.99391 -11.83981 -11.78977 -11.63212 -11.60955 -11.18258 -10.85391 -10.52863 -10.13055 -9.70114 -9.37671 -8.64994 -7.85841 -5.32187 -0.44037 0.54668 0.98031 1.44955 1.46507 1.49123 1.57813 2.09231 2.20052 2.54089 3.30065 3.59988 3.78264 3.91839 3.92874 4.02944 4.18481 4.20934 4.33524 4.35847 4.48494 4.49817 4.55065 4.60033 4.74688 4.78187 4.86911 4.89839 4.90850 5.02249 5.10027 5.12017 5.12407 5.18940 5.25941 5.33355 5.41612 5.43157 5.49001 5.56448 5.57866 5.70633 5.75800 6.41826 6.50528 7.15539 7.19344 7.85928 8.38255 9.21315 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.021800 B = 0.003226 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.094314 B = 8677.290752 C = 9073.770345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.073 4.073 3 C -0.023 4.023 4 C -0.157 4.157 5 C -0.213 4.213 6 S 0.219 5.781 7 C -0.305 4.305 8 C 0.586 3.414 9 O -0.560 6.560 10 N -0.708 5.708 11 C 0.150 3.850 12 H 0.061 0.939 13 C -0.109 4.109 14 C -0.128 4.128 15 C 0.177 3.823 16 N -0.599 5.599 17 C -0.256 4.256 18 H 0.071 0.929 19 C -0.046 4.046 20 N -0.932 5.932 21 Si 0.961 3.039 22 H -0.283 1.283 23 H -0.294 1.294 24 H -0.274 1.274 25 C 0.164 3.836 26 H 0.032 0.968 27 C -0.128 4.128 28 H 0.064 0.936 29 H 0.031 0.969 30 H 0.065 0.935 31 H 0.092 0.908 32 H 0.066 0.934 33 H 0.169 0.831 34 H 0.201 0.799 35 H 0.404 0.596 36 H 0.064 0.936 37 H 0.055 0.945 38 H 0.073 0.927 39 H 0.045 0.955 40 H 0.054 0.946 41 H 0.004 0.996 42 H 0.249 0.751 43 H 0.071 0.929 44 H 0.051 0.949 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.062 1.476 -24.499 24.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.112 4.112 3 C -0.039 4.039 4 C -0.187 4.187 5 C -0.351 4.351 6 S 0.488 5.512 7 C -0.425 4.425 8 C 0.374 3.626 9 O -0.441 6.441 10 N -0.359 5.359 11 C 0.043 3.957 12 H 0.079 0.921 13 C -0.147 4.147 14 C -0.168 4.168 15 C 0.051 3.949 16 N -0.323 5.323 17 C -0.386 4.386 18 H 0.089 0.911 19 C -0.242 4.242 20 N -0.578 5.578 21 Si 0.789 3.211 22 H -0.210 1.210 23 H -0.220 1.220 24 H -0.199 1.199 25 C 0.057 3.943 26 H 0.049 0.951 27 C -0.185 4.185 28 H 0.083 0.917 29 H 0.051 0.949 30 H 0.084 0.916 31 H 0.110 0.890 32 H 0.084 0.916 33 H 0.186 0.814 34 H 0.218 0.782 35 H 0.240 0.760 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.091 0.909 39 H 0.064 0.936 40 H 0.073 0.927 41 H 0.022 0.978 42 H 0.058 0.942 43 H 0.089 0.911 44 H 0.070 0.930 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 0.024 2.089 -23.350 23.443 hybrid contribution 0.095 -1.187 0.411 1.260 sum 0.119 0.902 -22.939 22.957 Atomic orbital electron populations 1.21541 0.94183 1.02029 1.01091 1.20399 0.96638 0.90904 1.03273 1.19788 0.95526 0.97511 0.91078 1.20098 1.04214 0.94564 0.99851 1.25696 1.06083 1.01380 1.01915 1.82972 1.59500 1.09071 0.99670 1.24392 1.19640 1.01881 0.96556 1.17288 0.77069 0.84606 0.83655 1.90765 1.47408 1.20296 1.85651 1.45826 1.67243 1.16902 1.05920 1.21330 0.95372 0.98811 0.80147 0.92064 1.21680 0.95528 1.01000 0.96532 1.22006 0.99931 0.99614 0.95239 1.20620 0.82558 0.95334 0.96370 1.44252 1.03058 1.77085 1.07904 1.19429 1.02331 1.29594 0.87254 0.91114 1.25764 1.00259 0.98598 0.99549 1.70169 1.37833 1.35414 1.14406 0.85380 0.78134 0.78861 0.78697 1.21000 1.22024 1.19900 1.20710 0.93729 0.95068 0.84752 0.95050 1.21724 0.95059 1.00957 1.00763 0.91725 0.94947 0.91591 0.88997 0.91584 0.81405 0.78164 0.76033 0.91729 0.92635 0.90857 0.93610 0.92722 0.97760 0.94189 0.91057 0.93016 0.93950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.80 9.78 71.98 0.70 -2.09 16 2 C -0.07 -1.60 5.50 29.85 0.16 -1.44 16 3 C -0.02 -0.50 5.16 -20.41 -0.11 -0.60 16 4 C -0.16 -2.38 9.96 21.08 0.21 -2.17 16 5 C -0.21 -2.71 10.92 66.81 0.73 -1.98 16 6 S 0.22 3.64 22.16 -56.49 -1.25 2.39 16 7 C -0.30 -7.47 6.45 24.08 0.16 -7.32 16 8 C 0.59 18.28 7.74 86.42 0.67 18.95 16 9 O -0.56 -21.12 13.38 -4.34 -0.06 -21.17 16 10 N -0.71 -21.16 4.57 -446.21 -2.04 -23.20 16 11 C 0.15 5.47 1.99 45.07 0.09 5.56 16 12 H 0.06 2.61 7.58 -2.39 -0.02 2.59 16 13 C -0.11 -3.90 5.46 30.62 0.17 -3.73 16 14 C -0.13 -5.10 6.08 30.66 0.19 -4.91 16 15 C 0.18 8.56 5.28 86.35 0.46 9.02 16 16 N -0.60 -29.69 2.99 -675.28 -2.02 -31.70 16 17 C -0.26 -13.83 8.58 84.03 0.72 -13.11 16 18 H 0.07 3.73 6.23 -2.91 -0.02 3.71 16 19 C -0.05 -2.56 4.94 84.86 0.42 -2.14 16 20 N -0.93 -54.56 11.23 21.65 0.24 -54.32 16 21 Si 0.96 44.91 29.58 68.60 2.03 46.94 16 22 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 23 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 24 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 25 C 0.16 6.62 3.03 44.98 0.14 6.76 16 26 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 27 C -0.13 -4.71 7.84 71.98 0.56 -4.15 16 28 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.03 0.86 7.60 -2.39 -0.02 0.85 16 30 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.09 1.50 8.12 -2.39 -0.02 1.48 16 32 H 0.07 1.87 6.32 -2.39 -0.02 1.86 16 33 H 0.17 1.64 8.06 -2.91 -0.02 1.62 16 34 H 0.20 1.18 8.06 -2.91 -0.02 1.15 16 35 H 0.40 10.07 7.72 -92.71 -0.72 9.35 16 36 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 39 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.05 2.99 6.15 -2.39 -0.01 2.98 16 41 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 42 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 43 H 0.07 2.12 7.79 -2.38 -0.02 2.10 16 44 H 0.05 2.03 7.67 -2.39 -0.02 2.01 16 45 H 0.04 1.66 7.40 -2.39 -0.02 1.64 16 Total: -1.00 -66.86 366.09 2.45 -64.42 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: 0.27 Total: 20.00 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: 5.27 Total: -3.35 kcal Atomic # 7 Polarization: -105.41 SS G_CDS: -3.81 Total: -109.22 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -0.06 Total: -21.17 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Atomic # 16 Polarization: 3.64 SS G_CDS: -1.25 Total: 2.39 kcal Total: -66.86 2.45 -64.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994471033.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.537 kcal (2) G-P(sol) polarization free energy of solvation -66.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds