Wall clock time and date at job start Tue Mar 31 2020 13:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50694 * 109.47557 * 2 1 4 4 C 1.33812 * 124.52822 * 89.99603 * 3 2 1 5 5 C 1.37464 * 115.10523 * 180.02562 * 4 3 2 6 6 C 1.36643 * 113.29836 * 0.02562 * 5 4 3 7 7 C 1.46588 * 125.46329 * 179.97438 * 6 5 4 8 8 O 1.21705 * 119.99511 * 6.46668 * 7 6 5 9 9 N 1.34772 * 120.00421 * 186.47684 * 7 6 5 10 10 C 1.48381 * 127.17143 * 176.09842 * 9 7 6 11 11 C 1.54939 * 103.37324 * 219.23465 * 10 9 7 12 12 H 1.09005 * 110.73993 * 81.06645 * 11 10 9 13 13 N 1.46502 * 110.74077 * 204.38592 * 11 10 9 14 14 C 1.36939 * 120.00300 * 268.42175 * 13 11 10 15 15 H 1.07999 * 119.99387 * 359.97438 * 14 13 11 16 16 C 1.38811 * 119.99985 * 179.97438 * 14 13 11 17 17 N 1.31622 * 120.00016 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 119.99947 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.47076 * 90.00163 * 18 16 14 20 20 H 1.48501 * 109.47540 * 210.00106 * 18 16 14 21 21 H 1.48498 * 109.47270 * 330.00397 * 18 16 14 22 22 C 1.54619 * 102.84028 * 322.72627 * 11 10 9 23 23 C 1.53004 * 110.32527 * 262.95611 * 22 11 10 24 24 C 1.52997 * 110.32815 * 140.74094 * 22 11 10 25 25 C 1.47485 * 127.03438 * 356.30342 * 9 7 6 26 26 S 1.70620 * 124.52098 * 270.27092 * 3 2 1 27 27 H 1.08990 * 109.47598 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46735 * 300.00540 * 1 2 3 29 29 H 1.09005 * 109.46806 * 59.99813 * 1 2 3 30 30 H 1.08999 * 109.46735 * 239.99459 * 2 1 3 31 31 H 1.09005 * 109.46806 * 120.00187 * 2 1 3 32 32 H 1.08010 * 122.44731 * 0.02562 * 4 3 2 33 33 H 1.08007 * 123.35513 * 179.97438 * 5 4 3 34 34 H 1.09001 * 110.51855 * 100.79929 * 10 9 7 35 35 H 1.09004 * 110.83742 * 337.82788 * 10 9 7 36 36 H 0.97002 * 119.99813 * 88.42499 * 13 11 10 37 37 H 0.97002 * 120.00092 * 180.02562 * 17 16 14 38 38 H 1.09001 * 109.46474 * 177.07337 * 23 22 11 39 39 H 1.08996 * 109.46958 * 297.07332 * 23 22 11 40 40 H 1.09001 * 109.46982 * 57.07408 * 23 22 11 41 41 H 1.09005 * 109.47044 * 302.92876 * 24 22 11 42 42 H 1.09004 * 109.47456 * 62.92257 * 24 22 11 43 43 H 1.09001 * 109.47409 * 182.92620 * 24 22 11 44 44 H 1.08999 * 109.91254 * 35.15059 * 25 9 7 45 45 H 1.08999 * 109.91055 * 274.07221 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4207 0.0000 4 6 2.2853 2.1358 1.1024 5 6 2.7369 3.4145 0.8773 6 6 2.8453 3.7237 -0.4492 7 6 3.2985 5.0092 -0.9886 8 8 3.7273 5.8665 -0.2386 9 7 3.2402 5.2419 -2.3148 10 6 3.5778 6.5033 -3.0194 11 6 2.4917 6.6007 -4.1201 12 1 1.5635 7.0009 -3.7121 13 7 2.9616 7.4175 -5.2418 14 6 2.7117 8.7638 -5.2604 15 1 2.1679 9.2233 -4.4483 16 6 3.1574 9.5378 -6.3230 17 7 3.8198 8.9776 -7.3129 18 14 2.8159 11.3741 -6.3488 19 1 3.9297 12.0941 -5.6805 20 1 2.7009 11.8366 -7.7553 21 1 1.5459 11.6515 -5.6310 22 6 2.3091 5.1279 -4.5539 23 6 3.1386 4.8359 -5.8060 24 6 0.8311 4.8294 -4.8127 25 6 2.8231 4.2945 -3.3653 26 16 2.3486 2.3345 -1.4058 27 1 -0.3634 -1.0275 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 2.1447 1.7374 2.0965 33 1 2.9809 4.1062 1.6701 34 1 4.5710 6.4386 -3.4638 35 1 3.5159 7.3546 -2.3415 36 1 3.4497 7.0047 -5.9713 37 1 4.1316 9.5185 -8.0553 38 1 3.0408 3.7827 -6.0691 39 1 2.7800 5.4514 -6.6310 40 1 4.1859 5.0657 -5.6097 41 1 0.2526 5.0546 -3.9167 42 1 0.4753 5.4449 -5.6390 43 1 0.7121 3.7761 -5.0667 44 1 2.0266 3.6517 -2.9906 45 1 3.6734 3.6881 -3.6772 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996006363.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:51 Heat of formation + Delta-G solvation = -10.625894 kcal Electronic energy + Delta-G solvation = -25315.713120 eV Core-core repulsion = 21845.203536 eV Total energy + Delta-G solvation = -3470.509585 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.41007 -39.74213 -38.61684 -36.02488 -34.68577 -34.50090 -32.77096 -30.53081 -28.83768 -28.28435 -27.51865 -26.27598 -25.48738 -23.42551 -23.12231 -21.80942 -20.18777 -19.66456 -19.07388 -18.92252 -17.23460 -17.00632 -16.92682 -16.37185 -15.80638 -15.70350 -15.41260 -15.14512 -14.97694 -14.70609 -14.65153 -14.23157 -14.21118 -13.80222 -13.48763 -13.39263 -13.18454 -12.97335 -12.89917 -12.79182 -12.72048 -12.65740 -12.41610 -12.24941 -12.08236 -11.98071 -11.92816 -11.69031 -11.47998 -11.24684 -11.16482 -10.96462 -10.02534 -9.58648 -9.47644 -9.03188 -7.97231 -5.25748 -0.51091 0.46507 0.93231 1.37203 1.46623 1.48105 1.55765 1.77269 2.10788 2.54783 3.30454 3.41632 3.46891 3.75240 3.81631 3.89649 4.07247 4.17849 4.26163 4.33072 4.35907 4.41686 4.43727 4.45673 4.50100 4.72511 4.79098 4.81609 4.86803 4.88545 4.95885 5.02939 5.07452 5.08520 5.15736 5.17497 5.23349 5.30249 5.38224 5.43791 5.45925 5.48695 5.55029 6.25353 6.40294 6.92328 7.33720 8.04693 8.31879 9.25330 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.023231 B = 0.003139 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.999226 B = 8917.583730 C = 9596.172144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.056 4.056 3 C -0.198 4.198 4 C -0.163 4.163 5 C -0.052 4.052 6 C -0.304 4.304 7 C 0.597 3.403 8 O -0.586 6.586 9 N -0.614 5.614 10 C 0.092 3.908 11 C 0.175 3.825 12 H 0.055 0.945 13 N -0.719 5.719 14 C -0.247 4.247 15 H 0.069 0.931 16 C -0.064 4.064 17 N -0.962 5.962 18 Si 0.967 3.033 19 H -0.291 1.291 20 H -0.292 1.292 21 H -0.272 1.272 22 C -0.076 4.076 23 C -0.131 4.131 24 C -0.130 4.130 25 C 0.107 3.893 26 S 0.252 5.748 27 H 0.078 0.922 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.164 0.836 33 H 0.144 0.856 34 H 0.062 0.938 35 H 0.052 0.948 36 H 0.387 0.613 37 H 0.253 0.747 38 H 0.089 0.911 39 H 0.050 0.950 40 H 0.044 0.956 41 H 0.055 0.945 42 H 0.050 0.950 43 H 0.088 0.912 44 H 0.095 0.905 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.000 -23.991 11.875 27.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.095 4.095 3 C -0.318 4.318 4 C -0.193 4.193 5 C -0.086 4.086 6 C -0.424 4.424 7 C 0.388 3.612 8 O -0.469 6.469 9 N -0.345 5.345 10 C -0.034 4.034 11 C 0.063 3.937 12 H 0.073 0.927 13 N -0.361 5.361 14 C -0.379 4.379 15 H 0.087 0.913 16 C -0.257 4.257 17 N -0.612 5.612 18 Si 0.796 3.204 19 H -0.219 1.219 20 H -0.219 1.219 21 H -0.197 1.197 22 C -0.078 4.078 23 C -0.188 4.188 24 C -0.187 4.187 25 C -0.017 4.017 26 S 0.522 5.478 27 H 0.097 0.903 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.106 0.894 31 H 0.116 0.884 32 H 0.181 0.819 33 H 0.161 0.839 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.223 0.777 37 H 0.062 0.938 38 H 0.107 0.893 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.107 0.893 44 H 0.112 0.888 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.956 -23.696 10.809 26.957 hybrid contribution 0.605 2.038 1.323 2.504 sum -6.351 -21.658 12.132 25.624 Atomic orbital electron populations 1.21813 0.93511 1.03110 1.02238 1.20301 0.96679 0.87717 1.04831 1.25161 1.04543 1.03153 0.98894 1.20051 1.05196 0.93052 1.00956 1.20895 0.95935 0.97261 0.94550 1.24343 1.19413 0.99332 0.99299 1.17093 0.77627 0.86200 0.80288 1.90778 1.49814 1.47991 1.58285 1.48694 1.65114 1.15806 1.04935 1.23347 1.00298 0.85198 0.94540 1.21381 0.93893 0.91108 0.87300 0.92735 1.42650 1.66569 1.04696 1.22202 1.19573 1.28842 0.85667 1.03831 0.91300 1.25435 1.01348 1.01920 0.97045 1.69779 1.44092 1.36001 1.11292 0.85246 0.77840 0.80857 0.76434 1.21850 1.21853 1.19733 1.21641 0.97924 0.93559 0.94628 1.21711 0.98606 1.02475 0.96045 1.21810 0.92312 1.02901 1.01657 1.22634 1.00659 0.91552 0.86813 1.83057 1.58954 0.99808 1.05996 0.90261 0.92611 0.92818 0.89403 0.88411 0.81898 0.83859 0.91970 0.92968 0.77674 0.93844 0.89262 0.93053 0.93647 0.92616 0.93134 0.89340 0.88761 0.89017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.90 71.98 0.71 -0.55 16 2 C -0.06 -0.52 6.36 29.85 0.19 -0.33 16 3 C -0.20 -3.05 5.53 24.68 0.14 -2.91 16 4 C -0.16 -2.84 9.99 21.08 0.21 -2.63 16 5 C -0.05 -1.25 10.02 21.71 0.22 -1.03 16 6 C -0.30 -8.30 6.39 24.08 0.15 -8.14 16 7 C 0.60 21.35 7.85 86.42 0.68 22.03 16 8 O -0.59 -25.71 17.11 -4.36 -0.07 -25.78 16 9 N -0.61 -20.71 3.30 -813.52 -2.69 -23.40 16 10 C 0.09 3.67 6.76 86.68 0.59 4.25 16 11 C 0.17 6.88 3.15 46.21 0.15 7.02 16 12 H 0.05 2.27 7.81 -2.38 -0.02 2.25 16 13 N -0.72 -34.93 4.97 -317.20 -1.58 -36.51 16 14 C -0.25 -13.59 9.96 84.03 0.84 -12.75 16 15 H 0.07 3.74 7.83 -2.91 -0.02 3.71 16 16 C -0.06 -3.64 5.50 84.86 0.47 -3.18 16 17 N -0.96 -57.15 13.06 21.65 0.28 -56.87 16 18 Si 0.97 46.16 29.55 68.60 2.03 48.18 16 19 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 20 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 21 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 22 C -0.08 -2.22 0.95 -51.29 -0.05 -2.27 16 23 C -0.13 -3.80 7.02 71.98 0.51 -3.29 16 24 C -0.13 -3.19 8.23 71.98 0.59 -2.60 16 25 C 0.11 2.75 5.10 86.53 0.44 3.19 16 26 S 0.25 4.62 18.62 -56.49 -1.05 3.57 16 27 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 30 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.10 0.65 8.14 -2.38 -0.02 0.63 16 32 H 0.16 1.99 8.06 -2.91 -0.02 1.96 16 33 H 0.14 3.52 8.06 -2.91 -0.02 3.49 16 34 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 35 H 0.05 2.33 7.91 -2.38 -0.02 2.31 16 36 H 0.39 19.42 5.13 -92.71 -0.48 18.94 16 37 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 38 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.05 1.79 7.00 -2.39 -0.02 1.77 16 40 H 0.04 1.43 7.95 -2.39 -0.02 1.41 16 41 H 0.05 1.34 8.13 -2.38 -0.02 1.32 16 42 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 43 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.10 2.00 4.41 -17.12 -0.08 1.92 16 45 H 0.09 2.06 7.68 -2.39 -0.02 2.04 16 Total: -1.00 -70.26 372.19 3.19 -67.07 By element: Atomic # 1 Polarization: 26.46 SS G_CDS: 0.44 Total: 26.90 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: 5.82 Total: -3.17 kcal Atomic # 7 Polarization: -112.79 SS G_CDS: -3.98 Total: -116.77 kcal Atomic # 8 Polarization: -25.71 SS G_CDS: -0.07 Total: -25.78 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.18 kcal Atomic # 16 Polarization: 4.62 SS G_CDS: -1.05 Total: 3.57 kcal Total: -70.26 3.19 -67.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996006363.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.446 kcal (2) G-P(sol) polarization free energy of solvation -70.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds