Wall clock time and date at job start Tue Mar 31 2020 13:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50698 * 109.47184 * 2 1 4 4 C 1.37470 * 123.35411 * 264.71031 * 3 2 1 5 5 C 1.33816 * 115.09859 * 179.83601 * 4 3 2 6 6 S 1.70615 * 110.95621 * 0.42043 * 5 4 3 7 7 C 1.36655 * 123.34493 * 85.00095 * 3 2 1 8 8 C 1.46577 * 125.46068 * 359.97438 * 7 3 2 9 9 O 1.21697 * 119.99919 * 359.97438 * 8 7 3 10 10 N 1.34775 * 119.99629 * 179.97438 * 8 7 3 11 11 C 1.47022 * 125.65385 * 0.02562 * 10 8 7 12 12 C 1.54317 * 107.27370 * 181.02161 * 11 10 8 13 13 H 1.08996 * 110.72000 * 140.55489 * 12 11 10 14 14 N 1.46500 * 110.72122 * 263.65455 * 12 11 10 15 15 C 1.36942 * 119.99826 * 273.54490 * 14 12 11 16 16 H 1.08005 * 119.99965 * 359.97438 * 15 14 12 17 17 C 1.38808 * 120.00121 * 180.02562 * 15 14 12 18 18 N 1.31619 * 120.00214 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99928 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47263 * 89.99811 * 19 17 15 21 21 H 1.48500 * 109.47292 * 209.99950 * 19 17 15 22 22 H 1.48504 * 109.47081 * 329.99910 * 19 17 15 23 23 C 1.55158 * 102.94252 * 22.19314 * 12 11 10 24 24 C 1.53006 * 111.00415 * 82.57311 * 23 12 11 25 25 C 1.52997 * 111.00402 * 206.38310 * 23 12 11 26 26 C 1.47431 * 125.64724 * 179.71603 * 10 8 7 27 27 H 1.09001 * 109.47002 * 299.99404 * 1 2 3 28 28 H 1.08993 * 109.46955 * 59.99842 * 1 2 3 29 29 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46801 * 120.00442 * 2 1 3 31 31 H 1.09001 * 109.46998 * 240.00038 * 2 1 3 32 32 H 1.08002 * 122.44966 * 0.02562 * 4 3 2 33 33 H 1.08002 * 124.52297 * 180.18226 * 5 4 3 34 34 H 1.08999 * 109.87808 * 300.44305 * 11 10 8 35 35 H 1.09002 * 109.88041 * 61.60049 * 11 10 8 36 36 H 0.96999 * 120.00072 * 93.54748 * 14 12 11 37 37 H 0.96999 * 119.99980 * 179.97438 * 18 17 15 38 38 H 1.09000 * 109.47245 * 59.99984 * 24 23 12 39 39 H 1.08993 * 109.47304 * 180.02562 * 24 23 12 40 40 H 1.09001 * 109.46870 * 299.99947 * 24 23 12 41 41 H 1.09002 * 109.47424 * 60.00448 * 25 23 12 42 42 H 1.09004 * 109.47635 * 179.97438 * 25 23 12 43 43 H 1.09004 * 109.47542 * 300.00071 * 25 23 12 44 44 H 1.09003 * 110.36488 * 274.74951 * 26 10 8 45 45 H 1.09003 * 110.36774 * 37.06431 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3842 2.0981 -1.1434 5 6 2.8056 3.3537 -0.9524 6 16 2.7937 3.7558 0.7057 7 6 2.1890 2.1622 1.1372 8 6 1.8996 1.7024 2.4986 9 8 1.4825 0.5743 2.6841 10 7 2.0954 2.5291 3.5449 11 6 2.5920 3.9106 3.4643 12 6 2.6779 4.4515 4.9070 13 1 3.5731 5.0593 5.0383 14 7 1.4775 5.2204 5.2447 15 6 1.4082 6.5525 4.9351 16 1 2.2386 7.0364 4.4424 17 6 0.2710 7.2813 5.2555 18 7 0.2045 8.5618 4.9584 19 14 -1.1644 6.4449 6.1096 20 1 -0.9897 6.5420 7.5811 21 1 -2.4314 7.1123 5.7164 22 1 -1.2133 5.0154 5.7102 23 6 2.7632 3.1574 5.7588 24 6 4.1980 2.6285 5.8106 25 6 2.2172 3.3919 7.1687 26 6 1.8411 2.2000 4.9593 27 1 -0.3633 0.5137 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 2.3218 1.6506 -2.1244 33 1 3.1159 4.0220 -1.7420 34 1 3.5801 3.9230 3.0042 35 1 1.9014 4.5193 2.8807 36 1 0.7319 4.7859 5.6876 37 1 -0.5903 9.0709 5.1820 38 1 4.8475 3.3827 6.2549 39 1 4.2292 1.7210 6.4135 40 1 4.5394 2.4047 4.7999 41 1 1.1739 3.7018 7.1075 42 1 2.2884 2.4690 7.7442 43 1 2.7997 4.1720 7.6589 44 1 0.7954 2.3805 5.2086 45 1 2.1062 1.1621 5.1610 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996668161.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:09 Heat of formation + Delta-G solvation = 8.534369 kcal Electronic energy + Delta-G solvation = -26112.641874 eV Core-core repulsion = 22642.963141 eV Total energy + Delta-G solvation = -3469.678734 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.21911 -38.81831 -37.29028 -34.13188 -33.37634 -32.68500 -31.15381 -29.53485 -28.37878 -26.96452 -26.52784 -24.88071 -23.69525 -22.32140 -21.60589 -20.55094 -19.17664 -18.17041 -17.61766 -17.55565 -15.96338 -15.85500 -15.40845 -14.92448 -14.50603 -14.39763 -14.05635 -14.01724 -13.70654 -13.51021 -13.08302 -12.86090 -12.80516 -12.56858 -12.31194 -12.22166 -12.13886 -11.94494 -11.81061 -11.68048 -11.46557 -11.31044 -11.03457 -10.91361 -10.73213 -10.63811 -10.42245 -10.34049 -9.98122 -9.68989 -9.63577 -9.07084 -8.80041 -8.52318 -8.17818 -7.42567 -5.88129 -3.25437 0.61578 1.62560 2.04742 2.43082 3.17349 3.30365 3.32994 3.36239 3.39490 4.49353 4.50570 4.83491 4.87978 4.90593 5.01153 5.14915 5.20771 5.24647 5.41052 5.44556 5.48178 5.50461 5.57525 5.72568 5.74852 5.78657 5.82761 5.88883 5.98181 6.03655 6.04393 6.04892 6.09392 6.17585 6.19323 6.31472 6.37681 6.40355 6.49429 6.54588 6.58916 6.63845 7.71831 7.86041 8.30394 8.31928 9.07235 9.79783 9.97924 11.29432 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012802 B = 0.004694 C = 0.004212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.716202 B = 5964.206921 C = 6646.314691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.068 4.068 3 C -0.027 4.027 4 C -0.151 4.151 5 C -0.255 4.255 6 S 0.238 5.762 7 C -0.268 4.268 8 C 0.602 3.398 9 O -0.539 6.539 10 N -0.604 5.604 11 C 0.058 3.942 12 C 0.190 3.810 13 H 0.082 0.918 14 N -0.736 5.736 15 C -0.251 4.251 16 H 0.093 0.907 17 C 0.013 3.987 18 N -0.928 5.928 19 Si 0.877 3.123 20 H -0.282 1.282 21 H -0.290 1.290 22 H -0.277 1.277 23 C -0.091 4.091 24 C -0.129 4.129 25 C -0.127 4.127 26 C 0.122 3.878 27 H 0.059 0.941 28 H 0.048 0.952 29 H 0.055 0.945 30 H 0.092 0.908 31 H 0.065 0.935 32 H 0.137 0.863 33 H 0.163 0.837 34 H 0.064 0.936 35 H 0.087 0.913 36 H 0.364 0.636 37 H 0.261 0.739 38 H 0.061 0.939 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.058 0.942 42 H 0.050 0.950 43 H 0.066 0.934 44 H 0.067 0.933 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.271 -13.959 -6.976 17.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.108 4.108 3 C -0.043 4.043 4 C -0.182 4.182 5 C -0.393 4.393 6 S 0.509 5.491 7 C -0.388 4.388 8 C 0.391 3.609 9 O -0.419 6.419 10 N -0.336 5.336 11 C -0.069 4.069 12 C 0.078 3.922 13 H 0.100 0.900 14 N -0.378 5.378 15 C -0.381 4.381 16 H 0.111 0.889 17 C -0.183 4.183 18 N -0.574 5.574 19 Si 0.707 3.293 20 H -0.208 1.208 21 H -0.216 1.216 22 H -0.203 1.203 23 C -0.093 4.093 24 C -0.187 4.187 25 C -0.185 4.185 26 C 0.000 4.000 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.111 0.889 31 H 0.083 0.917 32 H 0.155 0.845 33 H 0.181 0.819 34 H 0.082 0.918 35 H 0.105 0.895 36 H 0.199 0.801 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.469 -12.953 -6.206 16.189 hybrid contribution -1.554 -1.443 -0.666 2.223 sum 5.915 -14.396 -6.873 17.014 Atomic orbital electron populations 1.21600 0.94508 1.01458 1.01843 1.20361 0.96392 0.90832 1.03167 1.19426 0.96950 0.97362 0.90518 1.19809 1.04728 0.94353 0.99300 1.25671 1.07899 1.01243 1.04458 1.83911 1.58423 1.10630 0.96111 1.24410 1.17188 0.99914 0.97306 1.16539 0.77950 0.84205 0.82201 1.90749 1.47399 1.18892 1.84909 1.48258 1.64457 1.14388 1.06527 1.23399 0.98750 0.81656 1.03116 1.21130 0.92064 0.90397 0.88592 0.90041 1.42824 1.15278 1.08056 1.71617 1.19033 1.02310 0.83233 1.33505 0.88875 1.24630 0.97703 0.95421 1.00584 1.69685 1.29307 1.06433 1.52003 0.86677 0.83568 0.78971 0.80072 1.20796 1.21610 1.20347 1.22095 0.95493 0.95831 0.95889 1.21670 0.94577 1.00711 1.01736 1.21599 1.01690 1.01115 0.94074 1.22321 0.99129 0.99148 0.79424 0.92167 0.93330 0.92588 0.88921 0.91680 0.84513 0.81893 0.91784 0.89470 0.80134 0.92899 0.91967 0.92598 0.92679 0.92271 0.93053 0.91482 0.91490 0.90656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 9.78 37.16 0.36 -1.35 16 2 C -0.07 -0.87 5.50 -27.88 -0.15 -1.02 16 3 C -0.03 -0.37 5.16 -105.47 -0.54 -0.92 16 4 C -0.15 -1.80 9.96 -41.41 -0.41 -2.21 16 5 C -0.26 -2.97 10.92 29.18 0.32 -2.65 16 6 S 0.24 3.22 18.43 -107.50 -1.98 1.24 16 7 C -0.27 -4.13 6.38 -36.79 -0.23 -4.37 16 8 C 0.60 10.38 7.81 -12.90 -0.10 10.28 16 9 O -0.54 -10.12 13.97 5.19 0.07 -10.05 16 10 N -0.60 -9.99 3.31 -171.96 -0.57 -10.56 16 11 C 0.06 0.95 4.59 -3.07 -0.01 0.94 16 12 C 0.19 3.26 2.85 -66.10 -0.19 3.08 16 13 H 0.08 1.38 8.02 -51.93 -0.42 0.97 16 14 N -0.74 -15.76 4.42 -51.65 -0.23 -15.99 16 15 C -0.25 -6.50 10.46 -15.06 -0.16 -6.66 16 16 H 0.09 2.56 8.06 -52.48 -0.42 2.14 16 17 C 0.01 0.37 5.50 -17.43 -0.10 0.27 16 18 N -0.93 -27.78 13.97 55.49 0.78 -27.00 16 19 Si 0.88 21.26 27.74 -169.99 -4.71 16.55 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 22 H -0.28 -6.43 6.52 56.52 0.37 -6.06 16 23 C -0.09 -1.31 0.84 -152.24 -0.13 -1.43 16 24 C -0.13 -1.54 8.59 37.16 0.32 -1.22 16 25 C -0.13 -1.77 8.22 37.16 0.31 -1.47 16 26 C 0.12 1.90 5.83 -2.41 -0.01 1.88 16 27 H 0.06 0.90 7.60 -51.93 -0.39 0.51 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.09 1.34 6.33 -51.93 -0.33 1.01 16 31 H 0.06 0.67 8.12 -51.93 -0.42 0.25 16 32 H 0.14 1.31 8.06 -52.49 -0.42 0.88 16 33 H 0.16 1.48 8.06 -52.49 -0.42 1.06 16 34 H 0.06 0.93 6.83 -51.93 -0.35 0.58 16 35 H 0.09 1.63 6.88 -51.93 -0.36 1.27 16 36 H 0.36 7.88 3.98 -40.82 -0.16 7.71 16 37 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.05 0.67 7.91 -51.93 -0.41 0.26 16 41 H 0.06 0.93 6.39 -51.93 -0.33 0.59 16 42 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.07 1.12 7.99 -51.93 -0.41 0.70 16 45 H 0.08 1.12 7.95 -51.93 -0.41 0.70 16 LS Contribution 364.30 15.07 5.49 5.49 Total: -1.00 -30.25 364.30 -8.87 -39.13 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -6.98 Total: 8.04 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: -0.74 Total: -6.84 kcal Atomic # 7 Polarization: -53.53 SS G_CDS: -0.02 Total: -53.55 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.07 Total: -10.05 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.71 Total: 16.55 kcal Atomic # 16 Polarization: 3.22 SS G_CDS: -1.98 Total: 1.24 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.25 -8.87 -39.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996668161.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.661 kcal (2) G-P(sol) polarization free energy of solvation -30.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds