Wall clock time and date at job start Tue Mar 31 2020 13:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50698 * 109.47184 * 2 1 4 4 C 1.37470 * 123.35411 * 264.71031 * 3 2 1 5 5 C 1.33816 * 115.09859 * 179.83601 * 4 3 2 6 6 S 1.70615 * 110.95621 * 0.42043 * 5 4 3 7 7 C 1.36655 * 123.34493 * 85.00095 * 3 2 1 8 8 C 1.46577 * 125.46068 * 359.97438 * 7 3 2 9 9 O 1.21697 * 119.99919 * 359.97438 * 8 7 3 10 10 N 1.34775 * 119.99629 * 179.97438 * 8 7 3 11 11 C 1.47022 * 125.65385 * 0.02562 * 10 8 7 12 12 C 1.54317 * 107.27370 * 181.02161 * 11 10 8 13 13 H 1.08996 * 110.72000 * 140.55489 * 12 11 10 14 14 N 1.46500 * 110.72122 * 263.65455 * 12 11 10 15 15 C 1.36942 * 119.99826 * 273.54490 * 14 12 11 16 16 H 1.08005 * 119.99965 * 359.97438 * 15 14 12 17 17 C 1.38808 * 120.00121 * 180.02562 * 15 14 12 18 18 N 1.31619 * 120.00214 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99928 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47263 * 89.99811 * 19 17 15 21 21 H 1.48500 * 109.47292 * 209.99950 * 19 17 15 22 22 H 1.48504 * 109.47081 * 329.99910 * 19 17 15 23 23 C 1.55158 * 102.94252 * 22.19314 * 12 11 10 24 24 C 1.53006 * 111.00415 * 82.57311 * 23 12 11 25 25 C 1.52997 * 111.00402 * 206.38310 * 23 12 11 26 26 C 1.47431 * 125.64724 * 179.71603 * 10 8 7 27 27 H 1.09001 * 109.47002 * 299.99404 * 1 2 3 28 28 H 1.08993 * 109.46955 * 59.99842 * 1 2 3 29 29 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46801 * 120.00442 * 2 1 3 31 31 H 1.09001 * 109.46998 * 240.00038 * 2 1 3 32 32 H 1.08002 * 122.44966 * 0.02562 * 4 3 2 33 33 H 1.08002 * 124.52297 * 180.18226 * 5 4 3 34 34 H 1.08999 * 109.87808 * 300.44305 * 11 10 8 35 35 H 1.09002 * 109.88041 * 61.60049 * 11 10 8 36 36 H 0.96999 * 120.00072 * 93.54748 * 14 12 11 37 37 H 0.96999 * 119.99980 * 179.97438 * 18 17 15 38 38 H 1.09000 * 109.47245 * 59.99984 * 24 23 12 39 39 H 1.08993 * 109.47304 * 180.02562 * 24 23 12 40 40 H 1.09001 * 109.46870 * 299.99947 * 24 23 12 41 41 H 1.09002 * 109.47424 * 60.00448 * 25 23 12 42 42 H 1.09004 * 109.47635 * 179.97438 * 25 23 12 43 43 H 1.09004 * 109.47542 * 300.00071 * 25 23 12 44 44 H 1.09003 * 110.36488 * 274.74951 * 26 10 8 45 45 H 1.09003 * 110.36774 * 37.06431 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3842 2.0981 -1.1434 5 6 2.8056 3.3537 -0.9524 6 16 2.7937 3.7558 0.7057 7 6 2.1890 2.1622 1.1372 8 6 1.8996 1.7024 2.4986 9 8 1.4825 0.5743 2.6841 10 7 2.0954 2.5291 3.5449 11 6 2.5920 3.9106 3.4643 12 6 2.6779 4.4515 4.9070 13 1 3.5731 5.0593 5.0383 14 7 1.4775 5.2204 5.2447 15 6 1.4082 6.5525 4.9351 16 1 2.2386 7.0364 4.4424 17 6 0.2710 7.2813 5.2555 18 7 0.2045 8.5618 4.9584 19 14 -1.1644 6.4449 6.1096 20 1 -0.9897 6.5420 7.5811 21 1 -2.4314 7.1123 5.7164 22 1 -1.2133 5.0154 5.7102 23 6 2.7632 3.1574 5.7588 24 6 4.1980 2.6285 5.8106 25 6 2.2172 3.3919 7.1687 26 6 1.8411 2.2000 4.9593 27 1 -0.3633 0.5137 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 2.3218 1.6506 -2.1244 33 1 3.1159 4.0220 -1.7420 34 1 3.5801 3.9230 3.0042 35 1 1.9014 4.5193 2.8807 36 1 0.7319 4.7859 5.6876 37 1 -0.5903 9.0709 5.1820 38 1 4.8475 3.3827 6.2549 39 1 4.2292 1.7210 6.4135 40 1 4.5394 2.4047 4.7999 41 1 1.1739 3.7018 7.1075 42 1 2.2884 2.4690 7.7442 43 1 2.7997 4.1720 7.6589 44 1 0.7954 2.3805 5.2086 45 1 2.1062 1.1621 5.1610 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996668161.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:08 Heat of formation + Delta-G solvation = -8.704585 kcal Electronic energy + Delta-G solvation = -26113.389412 eV Core-core repulsion = 22642.963141 eV Total energy + Delta-G solvation = -3470.426271 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.50885 -39.98678 -38.49347 -35.85990 -34.72748 -33.67806 -33.05028 -30.62451 -29.83539 -28.12229 -27.66941 -26.04844 -25.35371 -23.37680 -23.03451 -21.75113 -20.63568 -19.48678 -19.16896 -18.75463 -17.35035 -17.08882 -16.51672 -16.48850 -16.14400 -15.65401 -15.21219 -15.16008 -14.97139 -14.74730 -14.45184 -14.37417 -13.91504 -13.87465 -13.62934 -13.49016 -13.30421 -13.21693 -12.93481 -12.84243 -12.82272 -12.75661 -12.38194 -12.27237 -11.98081 -11.94368 -11.86443 -11.62993 -11.54363 -11.33804 -11.00305 -10.90203 -9.96226 -9.66243 -9.38011 -9.28202 -8.01510 -5.34403 -0.45009 0.56579 1.04213 1.36009 1.37186 1.40245 1.43280 1.91542 2.13293 2.46747 3.27080 3.28290 3.48676 3.71741 3.75677 3.89516 3.95115 4.14980 4.21692 4.31498 4.37337 4.44795 4.46832 4.51777 4.57148 4.69716 4.77180 4.80130 4.86027 4.87129 4.93703 5.02616 5.05340 5.07405 5.08272 5.19138 5.25371 5.31006 5.36075 5.45036 5.49590 5.52687 5.80059 6.22406 6.41234 7.01547 7.07702 7.82579 8.00357 9.19380 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012802 B = 0.004694 C = 0.004212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.716202 B = 5964.206921 C = 6646.314691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.068 4.068 3 C -0.023 4.023 4 C -0.155 4.155 5 C -0.237 4.237 6 S 0.217 5.783 7 C -0.304 4.304 8 C 0.596 3.404 9 O -0.563 6.563 10 N -0.607 5.607 11 C 0.070 3.930 12 C 0.179 3.821 13 H 0.086 0.914 14 N -0.738 5.738 15 C -0.222 4.222 16 H 0.070 0.930 17 C -0.052 4.052 18 N -0.977 5.977 19 Si 0.935 3.065 20 H -0.274 1.274 21 H -0.301 1.301 22 H -0.264 1.264 23 C -0.078 4.078 24 C -0.124 4.124 25 C -0.126 4.126 26 C 0.119 3.881 27 H 0.026 0.974 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.095 0.905 32 H 0.169 0.831 33 H 0.194 0.806 34 H 0.084 0.916 35 H 0.063 0.937 36 H 0.365 0.635 37 H 0.256 0.744 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.051 0.949 41 H 0.039 0.961 42 H 0.078 0.922 43 H 0.066 0.934 44 H 0.051 0.949 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.296 -15.976 -7.922 19.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.107 4.107 3 C -0.040 4.040 4 C -0.185 4.185 5 C -0.374 4.374 6 S 0.488 5.512 7 C -0.424 4.424 8 C 0.387 3.613 9 O -0.445 6.445 10 N -0.339 5.339 11 C -0.057 4.057 12 C 0.069 3.931 13 H 0.104 0.896 14 N -0.381 5.381 15 C -0.353 4.353 16 H 0.088 0.912 17 C -0.244 4.244 18 N -0.628 5.628 19 Si 0.764 3.236 20 H -0.200 1.200 21 H -0.228 1.228 22 H -0.189 1.189 23 C -0.079 4.079 24 C -0.181 4.181 25 C -0.184 4.184 26 C -0.003 4.003 27 H 0.046 0.954 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.113 0.887 32 H 0.186 0.814 33 H 0.211 0.789 34 H 0.102 0.898 35 H 0.081 0.919 36 H 0.199 0.801 37 H 0.065 0.935 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.070 0.930 41 H 0.058 0.942 42 H 0.097 0.903 43 H 0.085 0.915 44 H 0.069 0.931 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 8.532 -15.023 -7.141 18.694 hybrid contribution -1.775 -0.879 -0.504 2.044 sum 6.757 -15.901 -7.644 18.893 Atomic orbital electron populations 1.21555 0.94453 1.02160 1.00776 1.20389 0.96351 0.90388 1.03582 1.19797 0.95667 0.97770 0.90762 1.20090 1.04207 0.94292 0.99914 1.26000 1.06247 1.01534 1.03620 1.83915 1.58923 1.10141 0.98250 1.24386 1.19853 1.01214 0.96923 1.16871 0.77467 0.83981 0.83018 1.90722 1.48540 1.19783 1.85439 1.48318 1.64447 1.14204 1.06907 1.23136 0.99173 0.81363 1.01983 1.21397 0.90364 0.91514 0.89808 0.89604 1.42811 1.16818 1.06763 1.71679 1.19026 1.00828 0.84848 1.30553 0.91158 1.25263 1.00486 0.95966 1.02649 1.69837 1.30000 1.08127 1.54824 0.85719 0.80053 0.78467 0.79364 1.19956 1.22821 1.18932 1.22063 0.97014 0.93451 0.95376 1.21645 0.92575 1.01768 1.02111 1.21604 1.00297 1.02487 0.94017 1.22384 0.98615 1.00013 0.79264 0.95425 0.92051 0.91069 0.91024 0.88655 0.81399 0.78895 0.89800 0.91890 0.80087 0.93480 0.90818 0.90714 0.93004 0.94230 0.90288 0.91540 0.93069 0.89733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 9.78 71.98 0.70 -2.44 16 2 C -0.07 -1.62 5.50 29.85 0.16 -1.45 16 3 C -0.02 -0.61 5.16 -20.42 -0.11 -0.72 16 4 C -0.15 -3.21 9.96 21.08 0.21 -3.00 16 5 C -0.24 -4.84 10.92 66.81 0.73 -4.11 16 6 S 0.22 5.68 18.43 -56.49 -1.04 4.64 16 7 C -0.30 -9.23 6.38 24.08 0.15 -9.08 16 8 C 0.60 20.65 7.81 86.42 0.67 21.33 16 9 O -0.56 -21.38 13.97 -4.34 -0.06 -21.44 16 10 N -0.61 -19.97 3.31 -816.17 -2.70 -22.67 16 11 C 0.07 2.29 4.59 86.73 0.40 2.69 16 12 C 0.18 6.04 2.85 46.18 0.13 6.18 16 13 H 0.09 2.84 8.02 -2.39 -0.02 2.82 16 14 N -0.74 -31.57 4.42 -317.34 -1.40 -32.97 16 15 C -0.22 -11.65 10.46 84.03 0.88 -10.77 16 16 H 0.07 3.97 8.06 -2.91 -0.02 3.95 16 17 C -0.05 -2.91 5.50 84.86 0.47 -2.44 16 18 N -0.98 -60.31 13.97 21.65 0.30 -60.00 16 19 Si 0.94 44.61 27.74 68.60 1.90 46.51 16 20 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 21 H -0.30 -14.83 7.11 99.48 0.71 -14.13 16 22 H -0.26 -11.81 6.52 99.48 0.65 -11.16 16 23 C -0.08 -2.10 0.84 -50.71 -0.04 -2.14 16 24 C -0.12 -2.61 8.59 71.98 0.62 -1.99 16 25 C -0.13 -3.28 8.22 71.98 0.59 -2.69 16 26 C 0.12 3.62 5.83 86.93 0.51 4.13 16 27 H 0.03 0.82 7.60 -2.39 -0.02 0.80 16 28 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.07 2.04 6.33 -2.39 -0.02 2.02 16 31 H 0.10 1.67 8.12 -2.39 -0.02 1.65 16 32 H 0.17 2.43 8.06 -2.91 -0.02 2.41 16 33 H 0.19 2.74 8.06 -2.91 -0.02 2.72 16 34 H 0.08 2.39 6.83 -2.39 -0.02 2.38 16 35 H 0.06 2.39 6.88 -2.39 -0.02 2.37 16 36 H 0.36 15.61 3.98 -92.71 -0.37 15.24 16 37 H 0.26 15.26 8.31 -92.71 -0.77 14.48 16 38 H 0.07 1.41 8.14 -2.39 -0.02 1.40 16 39 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.05 1.14 7.91 -2.39 -0.02 1.12 16 41 H 0.04 1.18 6.39 -2.39 -0.02 1.17 16 42 H 0.08 1.61 8.14 -2.39 -0.02 1.60 16 43 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.05 1.70 7.99 -2.39 -0.02 1.69 16 45 H 0.08 2.41 7.95 -2.39 -0.02 2.39 16 Total: -1.00 -67.32 364.30 3.64 -63.68 By element: Atomic # 1 Polarization: 28.21 SS G_CDS: 0.56 Total: 28.77 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: 6.08 Total: -6.51 kcal Atomic # 7 Polarization: -111.84 SS G_CDS: -3.80 Total: -115.65 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -0.06 Total: -21.44 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.90 Total: 46.51 kcal Atomic # 16 Polarization: 5.68 SS G_CDS: -1.04 Total: 4.64 kcal Total: -67.32 3.64 -63.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996668161.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.974 kcal (2) G-P(sol) polarization free energy of solvation -67.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds