Wall clock time and date at job start Tue Mar 31 2020 13:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50698 * 109.47005 * 2 1 4 4 C 1.37474 * 122.44823 * 264.97246 * 3 2 1 5 5 C 1.36648 * 113.29721 * 179.97438 * 4 3 2 6 6 C 1.46584 * 125.45803 * 180.02562 * 5 4 3 7 7 O 1.21697 * 119.99954 * 30.71244 * 6 5 4 8 8 N 1.34779 * 119.99787 * 210.71594 * 6 5 4 9 9 C 1.46924 * 120.63328 * 6.18625 * 8 6 5 10 10 C 1.53625 * 108.54422 * 126.36718 * 9 8 6 11 11 C 1.53046 * 109.23564 * 54.85872 * 10 9 8 12 12 N 1.46505 * 109.44384 * 178.49466 * 11 10 9 13 13 C 1.36931 * 120.00051 * 275.06046 * 12 11 10 14 14 H 1.08003 * 120.00491 * 0.02562 * 13 12 11 15 15 C 1.38817 * 119.99747 * 179.97438 * 13 12 11 16 16 N 1.31616 * 120.00224 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99733 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47131 * 60.00723 * 17 15 13 19 19 H 1.48497 * 109.46912 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47532 * 300.00489 * 17 15 13 21 21 C 1.53039 * 109.54060 * 298.51082 * 11 10 9 22 22 C 1.46921 * 120.62773 * 186.47202 * 8 6 5 23 23 S 1.75826 * 109.08107 * 0.02562 * 5 4 3 24 24 C 1.33814 * 122.44977 * 84.95699 * 3 2 1 25 25 C 1.50699 * 124.52514 * 0.03462 * 24 3 2 26 26 H 1.09001 * 109.46659 * 59.99954 * 1 2 3 27 27 H 1.08994 * 109.47102 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46935 * 300.00227 * 1 2 3 29 29 H 1.09004 * 109.46935 * 239.99772 * 2 1 3 30 30 H 1.09001 * 109.46659 * 120.00046 * 2 1 3 31 31 H 1.08007 * 123.35319 * 359.97438 * 4 3 2 32 32 H 1.09001 * 109.58598 * 246.20713 * 9 8 6 33 33 H 1.09000 * 109.58650 * 6.62736 * 9 8 6 34 34 H 1.08999 * 109.63657 * 294.87321 * 10 9 8 35 35 H 1.08998 * 109.43264 * 174.72184 * 10 9 8 36 36 H 1.08997 * 109.45952 * 58.53603 * 11 10 9 37 37 H 0.96997 * 119.99498 * 95.06282 * 12 11 10 38 38 H 0.96999 * 120.00133 * 179.97438 * 16 15 13 39 39 H 1.09006 * 109.49278 * 301.41451 * 21 11 10 40 40 H 1.08991 * 109.52219 * 181.33692 * 21 11 10 41 41 H 1.08997 * 109.58814 * 353.36511 * 22 8 6 42 42 H 1.09001 * 109.59061 * 113.65510 * 22 8 6 43 43 H 1.08994 * 109.47205 * 180.02562 * 25 24 3 44 44 H 1.09008 * 109.46871 * 300.00939 * 25 24 3 45 45 H 1.09000 * 109.47146 * 60.00068 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3741 2.0823 -1.1556 5 6 2.8052 3.3608 -0.9392 6 6 3.2339 4.3011 -1.9788 7 8 2.7440 4.2431 -3.0913 8 7 4.1708 5.2298 -1.7026 9 6 4.8686 5.2278 -0.4097 10 6 6.3824 5.2184 -0.6715 11 6 6.7445 6.3964 -1.5789 12 7 8.1923 6.4128 -1.8025 13 6 9.0179 7.0243 -0.8972 14 1 8.6019 7.4941 -0.0182 15 6 10.3898 7.0393 -1.1088 16 7 10.8968 6.4664 -2.1797 17 14 11.5161 7.8741 0.1257 18 1 11.3649 7.2240 1.4522 19 1 12.9247 7.7522 -0.3281 20 1 11.1540 9.3102 0.2341 21 6 6.0230 6.2497 -2.9206 22 6 4.5092 6.2673 -2.6863 23 16 2.7634 3.6972 0.7861 24 6 2.1781 2.1308 1.1248 25 6 1.8674 1.6155 2.5065 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 2.3083 1.6360 -2.1370 32 1 4.5978 6.1211 0.1531 33 1 4.5886 4.3387 0.1553 34 1 6.6642 4.2845 -1.1579 35 1 6.9147 5.3113 0.2751 36 1 6.4400 7.3285 -1.1028 37 1 8.5659 5.9906 -2.5917 38 1 11.8554 6.4772 -2.3278 39 1 6.3083 5.3061 -3.3857 40 1 6.2995 7.0762 -3.5751 41 1 3.9920 6.0643 -3.6241 42 1 4.2075 7.2434 -2.3065 43 1 2.0736 2.3949 3.2399 44 1 0.8156 1.3343 2.5614 45 1 2.4877 0.7444 2.7173 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997270292.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:41 Heat of formation + Delta-G solvation = -3.173489 kcal Electronic energy + Delta-G solvation = -24891.329819 eV Core-core repulsion = 21421.143394 eV Total energy + Delta-G solvation = -3470.186424 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.12894 -38.84496 -37.26675 -34.51743 -33.20340 -32.10801 -31.75328 -30.84425 -29.32651 -27.34099 -24.99909 -24.18067 -23.53824 -23.07976 -22.05891 -20.36542 -19.35650 -18.39272 -18.03865 -17.07815 -16.32473 -16.03602 -15.20047 -14.95724 -14.77392 -14.46479 -14.31947 -13.80425 -13.76195 -13.60866 -13.45441 -13.32044 -13.12586 -12.92785 -12.57175 -12.56667 -12.25700 -12.03095 -11.77175 -11.71059 -11.53243 -11.21860 -10.99407 -10.90973 -10.87201 -10.71398 -10.47127 -10.27864 -9.92935 -9.84283 -9.68662 -8.95100 -8.80242 -8.50534 -8.37929 -6.99742 -5.79101 -3.08545 0.43595 1.29994 1.73981 2.24932 2.94311 3.21418 3.41570 3.46124 3.47341 4.45391 4.52874 4.56022 4.76472 4.81549 4.98957 5.03973 5.07183 5.20253 5.30331 5.31531 5.36306 5.37032 5.38868 5.50847 5.53622 5.58937 5.62197 5.65421 5.69366 5.80246 5.92384 5.93124 5.98024 6.16284 6.20733 6.29532 6.35149 6.37976 6.49065 6.60521 6.86633 7.01627 7.43289 7.65964 8.14692 8.38996 9.50151 10.07517 10.42360 11.43365 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.019107 B = 0.002909 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.104510 B = 9621.355653 C =10399.793378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.063 4.063 3 C -0.120 4.120 4 C -0.052 4.052 5 C -0.263 4.263 6 C 0.590 3.410 7 O -0.538 6.538 8 N -0.601 5.601 9 C 0.094 3.906 10 C -0.146 4.146 11 C 0.179 3.821 12 N -0.724 5.724 13 C -0.241 4.241 14 H 0.070 0.930 15 C -0.013 4.013 16 N -0.932 5.932 17 Si 0.907 3.093 18 H -0.286 1.286 19 H -0.291 1.291 20 H -0.286 1.286 21 C -0.139 4.139 22 C 0.118 3.882 23 S 0.222 5.778 24 C -0.215 4.215 25 C -0.081 4.081 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.148 0.852 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.061 0.939 35 H 0.077 0.923 36 H 0.049 0.951 37 H 0.384 0.616 38 H 0.256 0.744 39 H 0.064 0.936 40 H 0.078 0.922 41 H 0.090 0.910 42 H 0.069 0.931 43 H 0.067 0.933 44 H 0.076 0.924 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.360 -10.123 7.766 24.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.102 4.102 3 C -0.133 4.133 4 C -0.085 4.085 5 C -0.383 4.383 6 C 0.377 3.623 7 O -0.417 6.417 8 N -0.334 5.334 9 C -0.031 4.031 10 C -0.188 4.188 11 C 0.069 3.931 12 N -0.364 5.364 13 C -0.372 4.372 14 H 0.088 0.912 15 C -0.209 4.209 16 N -0.580 5.580 17 Si 0.738 3.262 18 H -0.213 1.213 19 H -0.217 1.217 20 H -0.213 1.213 21 C -0.178 4.178 22 C -0.004 4.004 23 S 0.492 5.508 24 C -0.334 4.334 25 C -0.140 4.140 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.166 0.834 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.067 0.933 37 H 0.218 0.782 38 H 0.066 0.934 39 H 0.083 0.917 40 H 0.096 0.904 41 H 0.108 0.892 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.095 0.905 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -21.134 -8.745 8.217 24.303 hybrid contribution 0.613 -1.011 -0.366 1.238 sum -20.520 -9.756 7.851 24.040 Atomic orbital electron populations 1.21729 0.94886 1.01552 1.02217 1.20222 0.95889 0.91306 1.02811 1.18575 1.04933 0.98411 0.91346 1.20523 0.96353 0.91987 0.99630 1.24462 1.16018 1.00501 0.97309 1.17006 0.79230 0.79680 0.86354 1.90797 1.57102 1.71533 1.22248 1.48017 1.37897 1.29605 1.17839 1.22356 0.94539 1.02199 0.83956 1.22732 0.91553 1.01921 1.02553 1.20169 0.85734 0.95058 0.92165 1.42425 0.99513 1.67153 1.27276 1.19184 0.88168 1.28085 1.01777 0.91200 1.24755 0.96848 1.01330 0.97957 1.69651 1.11800 1.48958 1.27623 0.86280 0.80112 0.79257 0.80596 1.21267 1.21712 1.21256 1.22207 0.93201 1.02854 0.99533 1.21662 0.96449 0.89579 0.92747 1.83289 1.58046 1.11044 0.98385 1.24287 1.07823 1.01087 1.00225 1.20343 1.02371 1.01348 0.89917 0.92470 0.92421 0.92703 0.90967 0.91038 0.83447 0.91006 0.90058 0.92053 0.90459 0.93330 0.78227 0.93419 0.91717 0.90378 0.89164 0.91298 0.91426 0.90534 0.90402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.90 37.16 0.37 -0.64 16 2 C -0.06 -0.49 5.83 -27.88 -0.16 -0.65 16 3 C -0.12 -1.22 5.04 -106.45 -0.54 -1.76 16 4 C -0.05 -0.64 9.91 -40.43 -0.40 -1.04 16 5 C -0.26 -3.53 5.73 -36.79 -0.21 -3.74 16 6 C 0.59 9.37 7.58 -12.89 -0.10 9.27 16 7 O -0.54 -10.02 16.41 5.19 0.09 -9.93 16 8 N -0.60 -8.96 2.97 -174.08 -0.52 -9.48 16 9 C 0.09 1.29 5.55 -3.49 -0.02 1.28 16 10 C -0.15 -2.50 5.67 -26.38 -0.15 -2.65 16 11 C 0.18 3.42 2.73 -67.88 -0.19 3.23 16 12 N -0.72 -17.71 5.12 -53.38 -0.27 -17.98 16 13 C -0.24 -6.51 9.93 -15.06 -0.15 -6.66 16 14 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 15 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 16 N -0.93 -27.93 13.06 55.49 0.72 -27.21 16 17 Si 0.91 22.03 29.55 -169.99 -5.02 17.01 16 18 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 C -0.14 -2.32 5.55 -26.61 -0.15 -2.47 16 22 C 0.12 1.73 6.44 -3.71 -0.02 1.70 16 23 S 0.22 2.34 19.25 -107.50 -2.07 0.27 16 24 C -0.22 -2.06 6.28 -35.86 -0.23 -2.29 16 25 C -0.08 -0.55 9.44 36.01 0.34 -0.21 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.36 7.40 -51.93 -0.38 -0.02 16 29 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 30 H 0.07 0.48 7.45 -51.93 -0.39 0.10 16 31 H 0.15 1.75 8.06 -52.48 -0.42 1.33 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.08 1.03 3.98 -26.16 -0.10 0.93 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 36 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 37 H 0.38 10.14 7.80 -40.82 -0.32 9.82 16 38 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 39 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.09 1.35 7.00 -51.93 -0.36 0.99 16 42 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.07 0.40 8.11 -51.93 -0.42 -0.02 16 44 H 0.08 0.44 7.40 -51.92 -0.38 0.05 16 45 H 0.08 0.46 7.92 -51.93 -0.41 0.05 16 LS Contribution 371.33 15.07 5.60 5.60 Total: -1.00 -31.77 371.33 -10.14 -41.91 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -6.97 Total: 6.88 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: -1.70 Total: -7.07 kcal Atomic # 7 Polarization: -54.60 SS G_CDS: -0.07 Total: -54.67 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.09 Total: -9.93 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Atomic # 16 Polarization: 2.34 SS G_CDS: -2.07 Total: 0.27 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.77 -10.14 -41.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997270292.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.734 kcal (2) G-P(sol) polarization free energy of solvation -31.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds