Wall clock time and date at job start Tue Mar 31 2020 13:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50698 * 109.47005 * 2 1 4 4 C 1.37474 * 122.44823 * 264.97246 * 3 2 1 5 5 C 1.36648 * 113.29721 * 179.97438 * 4 3 2 6 6 C 1.46584 * 125.45803 * 180.02562 * 5 4 3 7 7 O 1.21697 * 119.99954 * 30.71244 * 6 5 4 8 8 N 1.34779 * 119.99787 * 210.71594 * 6 5 4 9 9 C 1.46924 * 120.63328 * 6.18625 * 8 6 5 10 10 C 1.53625 * 108.54422 * 126.36718 * 9 8 6 11 11 C 1.53046 * 109.23564 * 54.85872 * 10 9 8 12 12 N 1.46505 * 109.44384 * 178.49466 * 11 10 9 13 13 C 1.36931 * 120.00051 * 275.06046 * 12 11 10 14 14 H 1.08003 * 120.00491 * 0.02562 * 13 12 11 15 15 C 1.38817 * 119.99747 * 179.97438 * 13 12 11 16 16 N 1.31616 * 120.00224 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99733 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47131 * 60.00723 * 17 15 13 19 19 H 1.48497 * 109.46912 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47532 * 300.00489 * 17 15 13 21 21 C 1.53039 * 109.54060 * 298.51082 * 11 10 9 22 22 C 1.46921 * 120.62773 * 186.47202 * 8 6 5 23 23 S 1.75826 * 109.08107 * 0.02562 * 5 4 3 24 24 C 1.33814 * 122.44977 * 84.95699 * 3 2 1 25 25 C 1.50699 * 124.52514 * 0.03462 * 24 3 2 26 26 H 1.09001 * 109.46659 * 59.99954 * 1 2 3 27 27 H 1.08994 * 109.47102 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46935 * 300.00227 * 1 2 3 29 29 H 1.09004 * 109.46935 * 239.99772 * 2 1 3 30 30 H 1.09001 * 109.46659 * 120.00046 * 2 1 3 31 31 H 1.08007 * 123.35319 * 359.97438 * 4 3 2 32 32 H 1.09001 * 109.58598 * 246.20713 * 9 8 6 33 33 H 1.09000 * 109.58650 * 6.62736 * 9 8 6 34 34 H 1.08999 * 109.63657 * 294.87321 * 10 9 8 35 35 H 1.08998 * 109.43264 * 174.72184 * 10 9 8 36 36 H 1.08997 * 109.45952 * 58.53603 * 11 10 9 37 37 H 0.96997 * 119.99498 * 95.06282 * 12 11 10 38 38 H 0.96999 * 120.00133 * 179.97438 * 16 15 13 39 39 H 1.09006 * 109.49278 * 301.41451 * 21 11 10 40 40 H 1.08991 * 109.52219 * 181.33692 * 21 11 10 41 41 H 1.08997 * 109.58814 * 353.36511 * 22 8 6 42 42 H 1.09001 * 109.59061 * 113.65510 * 22 8 6 43 43 H 1.08994 * 109.47205 * 180.02562 * 25 24 3 44 44 H 1.09008 * 109.46871 * 300.00939 * 25 24 3 45 45 H 1.09000 * 109.47146 * 60.00068 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3741 2.0823 -1.1556 5 6 2.8052 3.3608 -0.9392 6 6 3.2339 4.3011 -1.9788 7 8 2.7440 4.2431 -3.0913 8 7 4.1708 5.2298 -1.7026 9 6 4.8686 5.2278 -0.4097 10 6 6.3824 5.2184 -0.6715 11 6 6.7445 6.3964 -1.5789 12 7 8.1923 6.4128 -1.8025 13 6 9.0179 7.0243 -0.8972 14 1 8.6019 7.4941 -0.0182 15 6 10.3898 7.0393 -1.1088 16 7 10.8968 6.4664 -2.1797 17 14 11.5161 7.8741 0.1257 18 1 11.3649 7.2240 1.4522 19 1 12.9247 7.7522 -0.3281 20 1 11.1540 9.3102 0.2341 21 6 6.0230 6.2497 -2.9206 22 6 4.5092 6.2673 -2.6863 23 16 2.7634 3.6972 0.7861 24 6 2.1781 2.1308 1.1248 25 6 1.8674 1.6155 2.5065 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 2.3083 1.6360 -2.1370 32 1 4.5978 6.1211 0.1531 33 1 4.5886 4.3387 0.1553 34 1 6.6642 4.2845 -1.1579 35 1 6.9147 5.3113 0.2751 36 1 6.4400 7.3285 -1.1028 37 1 8.5659 5.9906 -2.5917 38 1 11.8554 6.4772 -2.3278 39 1 6.3083 5.3061 -3.3857 40 1 6.2995 7.0762 -3.5751 41 1 3.9920 6.0643 -3.6241 42 1 4.2075 7.2434 -2.3065 43 1 2.0736 2.3949 3.2399 44 1 0.8156 1.3343 2.5614 45 1 2.4877 0.7444 2.7173 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997270292.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:40 Heat of formation + Delta-G solvation = -21.379646 kcal Electronic energy + Delta-G solvation = -24892.119297 eV Core-core repulsion = 21421.143394 eV Total energy + Delta-G solvation = -3470.975903 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.33282 -39.72091 -38.63886 -36.19374 -34.17516 -33.65719 -32.53074 -32.03899 -31.05931 -28.27839 -26.53483 -24.84404 -24.79536 -24.54340 -23.29625 -21.66914 -20.48604 -19.32079 -19.23417 -18.94048 -17.29026 -17.20748 -16.68503 -16.37009 -15.79209 -15.53903 -15.40230 -15.20700 -15.07630 -14.89288 -14.66661 -14.34927 -14.06747 -13.92846 -13.57864 -13.41389 -13.26890 -13.21954 -12.88372 -12.80302 -12.74084 -12.58331 -12.35941 -12.24776 -12.20159 -12.04319 -11.80487 -11.73462 -11.46372 -11.34755 -11.17888 -10.86726 -9.88702 -9.53678 -9.25302 -8.98596 -7.92310 -5.21544 -0.47395 0.42039 0.89753 1.34812 1.48997 1.51760 1.57669 1.78916 2.09019 2.57730 3.39304 3.42031 3.77640 3.84205 3.85347 3.99877 4.08292 4.10761 4.17530 4.31039 4.33709 4.40109 4.52648 4.55028 4.63756 4.67369 4.69793 4.77717 4.78573 4.80666 4.91728 4.97563 4.99116 5.04357 5.11319 5.16115 5.26394 5.32502 5.44279 5.46439 5.53123 5.55512 5.56681 6.23431 6.28892 6.94290 7.34839 8.09874 8.33393 9.31258 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.019107 B = 0.002909 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.104510 B = 9621.355653 C =10399.793378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.062 4.062 3 C -0.133 4.133 4 C -0.053 4.053 5 C -0.303 4.303 6 C 0.587 3.413 7 O -0.576 6.576 8 N -0.603 5.603 9 C 0.102 3.898 10 C -0.136 4.136 11 C 0.175 3.825 12 N -0.738 5.738 13 C -0.236 4.236 14 H 0.081 0.919 15 C -0.079 4.079 16 N -0.973 5.973 17 Si 0.972 3.028 18 H -0.276 1.276 19 H -0.300 1.300 20 H -0.277 1.277 21 C -0.128 4.128 22 C 0.123 3.877 23 S 0.248 5.752 24 C -0.203 4.203 25 C -0.085 4.085 26 H 0.043 0.957 27 H 0.072 0.928 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.140 0.860 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.041 0.959 35 H 0.072 0.928 36 H 0.056 0.944 37 H 0.370 0.630 38 H 0.249 0.751 39 H 0.046 0.954 40 H 0.078 0.922 41 H 0.086 0.914 42 H 0.093 0.907 43 H 0.078 0.922 44 H 0.092 0.908 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.048 -10.369 10.689 27.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.101 4.101 3 C -0.145 4.145 4 C -0.087 4.087 5 C -0.423 4.423 6 C 0.377 3.623 7 O -0.458 6.458 8 N -0.334 5.334 9 C -0.022 4.022 10 C -0.177 4.177 11 C 0.066 3.934 12 N -0.377 5.377 13 C -0.367 4.367 14 H 0.099 0.901 15 C -0.271 4.271 16 N -0.624 5.624 17 Si 0.801 3.199 18 H -0.202 1.202 19 H -0.227 1.227 20 H -0.203 1.203 21 C -0.167 4.167 22 C 0.001 3.999 23 S 0.519 5.481 24 C -0.322 4.322 25 C -0.143 4.143 26 H 0.062 0.938 27 H 0.091 0.909 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.106 0.894 31 H 0.158 0.842 32 H 0.115 0.885 33 H 0.114 0.886 34 H 0.060 0.940 35 H 0.090 0.910 36 H 0.074 0.926 37 H 0.201 0.799 38 H 0.058 0.942 39 H 0.065 0.935 40 H 0.096 0.904 41 H 0.104 0.896 42 H 0.111 0.889 43 H 0.097 0.903 44 H 0.110 0.890 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -22.871 -8.978 11.182 26.995 hybrid contribution 1.032 -0.999 -1.243 1.900 sum -21.839 -9.978 9.939 25.986 Atomic orbital electron populations 1.21714 0.94173 1.02424 1.01814 1.20285 0.96438 0.89830 1.03563 1.18762 1.05331 0.99658 0.90700 1.20700 0.95770 0.91953 1.00301 1.24339 1.18536 1.00689 0.98704 1.17365 0.78864 0.79677 0.86427 1.90762 1.58479 1.72579 1.23987 1.48080 1.37738 1.29455 1.18135 1.22368 0.91755 1.04230 0.83799 1.22507 0.94112 0.99777 1.01328 1.20407 0.83121 0.96082 0.93780 1.42659 1.01630 1.66920 1.26463 1.19615 0.88616 1.26608 1.01897 0.90071 1.25578 0.98568 1.02983 0.99963 1.69825 1.11472 1.51292 1.29822 0.85227 0.77483 0.78572 0.78590 1.20184 1.22695 1.20310 1.22064 0.94586 1.01915 0.98145 1.21621 0.94464 0.90770 0.93060 1.83027 1.57870 1.11565 0.95673 1.24727 1.05751 1.00209 1.01548 1.20521 1.03610 1.02131 0.88016 0.93795 0.90939 0.92172 0.91100 0.89440 0.84223 0.88529 0.88615 0.94017 0.90988 0.92619 0.79896 0.94193 0.93468 0.90390 0.89595 0.88863 0.90323 0.88959 0.89065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.90 71.98 0.71 -0.96 16 2 C -0.06 -0.83 5.83 29.85 0.17 -0.66 16 3 C -0.13 -2.48 5.04 -21.05 -0.11 -2.58 16 4 C -0.05 -1.29 9.91 21.72 0.22 -1.07 16 5 C -0.30 -7.96 5.73 24.08 0.14 -7.82 16 6 C 0.59 18.68 7.58 86.42 0.66 19.33 16 7 O -0.58 -22.01 16.41 -4.34 -0.07 -22.08 16 8 N -0.60 -17.51 2.97 -822.89 -2.44 -19.95 16 9 C 0.10 2.64 5.55 86.51 0.48 3.12 16 10 C -0.14 -4.56 5.67 30.82 0.17 -4.39 16 11 C 0.17 6.58 2.73 45.02 0.12 6.71 16 12 N -0.74 -36.52 5.12 -322.80 -1.65 -38.17 16 13 C -0.24 -12.68 9.93 84.04 0.83 -11.84 16 14 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 15 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16 16 N -0.97 -59.66 13.06 21.65 0.28 -59.38 16 17 Si 0.97 45.37 29.55 68.60 2.03 47.40 16 18 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 19 H -0.30 -14.34 7.11 99.48 0.71 -13.64 16 20 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 21 C -0.13 -4.30 5.55 30.67 0.17 -4.13 16 22 C 0.12 3.53 6.44 86.36 0.56 4.08 16 23 S 0.25 4.68 19.25 -56.49 -1.09 3.59 16 24 C -0.20 -3.34 6.28 24.68 0.15 -3.18 16 25 C -0.08 -0.81 9.44 71.24 0.67 -0.14 16 26 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.06 0.63 7.40 -2.38 -0.02 0.61 16 29 H 0.07 0.97 8.10 -2.38 -0.02 0.95 16 30 H 0.09 0.90 7.45 -2.39 -0.02 0.88 16 31 H 0.14 3.45 8.06 -2.91 -0.02 3.43 16 32 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.10 2.25 3.98 -18.77 -0.07 2.17 16 34 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 36 H 0.06 2.04 8.08 -2.39 -0.02 2.02 16 37 H 0.37 20.16 7.80 -92.71 -0.72 19.43 16 38 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 39 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 40 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 41 H 0.09 2.58 7.00 -2.39 -0.02 2.57 16 42 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 43 H 0.08 0.62 8.11 -2.39 -0.02 0.60 16 44 H 0.09 0.66 7.40 -2.38 -0.02 0.65 16 45 H 0.09 0.71 7.92 -2.39 -0.02 0.69 16 Total: -1.00 -69.68 371.33 2.68 -66.99 By element: Atomic # 1 Polarization: 28.93 SS G_CDS: 0.20 Total: 29.13 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: 5.42 Total: -7.54 kcal Atomic # 7 Polarization: -113.69 SS G_CDS: -3.81 Total: -117.50 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: -0.07 Total: -22.08 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Atomic # 16 Polarization: 4.68 SS G_CDS: -1.09 Total: 3.59 kcal Total: -69.68 2.68 -66.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997270292.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.612 kcal (2) G-P(sol) polarization free energy of solvation -69.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds