Wall clock time and date at job start Tue Mar 31 2020 13:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47127 * 2 1 4 4 C 1.50701 * 109.46879 * 240.00327 * 2 1 3 5 5 C 1.37468 * 123.35218 * 55.08007 * 4 2 1 6 6 C 1.33819 * 115.09929 * 179.97438 * 5 4 2 7 7 S 1.70618 * 110.95673 * 359.97438 * 6 5 4 8 8 C 1.36651 * 123.34764 * 234.78271 * 4 2 1 9 9 C 1.46579 * 125.46024 * 0.02562 * 8 4 2 10 10 O 1.21710 * 119.99689 * 274.86417 * 9 8 4 11 11 N 1.34773 * 120.00532 * 94.86250 * 9 8 4 12 12 C 1.46930 * 120.62921 * 4.82866 * 11 9 8 13 13 C 1.53620 * 108.54177 * 126.36711 * 12 11 9 14 14 C 1.53044 * 109.23969 * 54.86137 * 13 12 11 15 15 N 1.46506 * 109.45924 * 178.48680 * 14 13 12 16 16 C 1.36937 * 119.99905 * 275.06625 * 15 14 13 17 17 H 1.07992 * 120.00295 * 0.02562 * 16 15 14 18 18 C 1.38809 * 119.99619 * 179.97438 * 16 15 14 19 19 N 1.31619 * 119.99963 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 120.00168 * 0.02562 * 18 16 15 21 21 H 1.48506 * 109.46783 * 90.00142 * 20 18 16 22 22 H 1.48496 * 109.47253 * 209.99764 * 20 18 16 23 23 H 1.48498 * 109.47399 * 330.00107 * 20 18 16 24 24 C 1.53040 * 109.53850 * 298.50826 * 14 13 12 25 25 C 1.46923 * 120.63278 * 185.11268 * 11 9 8 26 26 H 1.09003 * 109.47518 * 59.99623 * 1 2 3 27 27 H 1.09005 * 109.46910 * 300.00090 * 1 2 3 28 28 H 1.09002 * 109.47049 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47277 * 119.99908 * 2 1 3 30 30 H 1.09001 * 109.47065 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.46962 * 300.00074 * 3 2 1 32 32 H 1.08996 * 109.47196 * 60.00325 * 3 2 1 33 33 H 1.07996 * 122.45142 * 359.93979 * 5 4 2 34 34 H 1.07999 * 124.52289 * 179.97438 * 6 5 4 35 35 H 1.08998 * 109.58629 * 246.20797 * 12 11 9 36 36 H 1.09005 * 109.58163 * 6.62570 * 12 11 9 37 37 H 1.09001 * 109.63759 * 294.86602 * 13 12 11 38 38 H 1.09002 * 109.42946 * 174.72154 * 13 12 11 39 39 H 1.09003 * 109.46308 * 58.52745 * 14 13 12 40 40 H 0.96993 * 119.99604 * 95.06597 * 15 14 13 41 41 H 0.97002 * 119.99883 * 180.02562 * 19 18 16 42 42 H 1.09001 * 109.49298 * 301.41900 * 24 14 13 43 43 H 1.08997 * 109.52666 * 181.33504 * 24 14 13 44 44 H 1.08996 * 109.58756 * 353.36913 * 25 11 9 45 45 H 1.09002 * 109.58996 * 113.65832 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 -1.2305 5 6 1.6644 -0.3607 -2.5081 6 6 2.2099 -1.1027 -3.4790 7 16 3.2342 -2.3019 -2.8281 8 6 2.9033 -1.7624 -1.1876 9 6 3.4693 -2.3486 0.0307 10 8 4.4679 -1.8654 0.5313 11 7 2.8840 -3.4226 0.5967 12 6 1.7420 -4.0814 -0.0518 13 6 2.0599 -5.5771 -0.1991 14 6 2.4218 -6.1532 1.1719 15 7 2.6909 -7.5875 1.0430 16 6 1.6569 -8.4844 1.0835 17 1 0.6431 -8.1345 1.2099 18 6 1.9118 -9.8434 0.9608 19 7 0.9181 -10.7056 1.0002 20 14 3.6653 -10.4487 0.7413 21 1 4.2697 -10.7083 2.0728 22 1 3.6601 -11.7034 -0.0530 23 1 4.4603 -9.4157 0.0298 24 6 3.6680 -5.4471 1.7110 25 6 3.3719 -3.9532 1.8770 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 0.8899 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 0.9845 0.4529 -2.7132 34 1 2.0263 -0.9613 -4.5338 35 1 0.8499 -3.9532 0.5612 36 1 1.5778 -3.6426 -1.0360 37 1 2.8996 -5.7077 -0.8818 38 1 1.1862 -6.0965 -0.5927 39 1 1.5911 -6.0002 1.8609 40 1 3.6014 -7.9018 0.9290 41 1 1.0963 -11.6552 0.9149 42 1 4.4924 -5.5788 1.0102 43 1 3.9394 -5.8737 2.6765 44 1 4.2834 -3.4300 2.1659 45 1 2.6109 -3.8126 2.6447 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997361127.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:35 Heat of formation + Delta-G solvation = 0.649054 kcal Electronic energy + Delta-G solvation = -25516.039192 eV Core-core repulsion = 22046.018526 eV Total energy + Delta-G solvation = -3470.020667 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.35998 -38.71921 -37.34198 -34.64335 -34.31910 -32.18509 -31.17597 -30.08792 -29.32924 -27.35483 -25.57014 -24.46265 -23.06210 -22.45259 -22.05481 -20.89712 -19.76002 -18.23936 -17.81502 -17.38128 -16.75451 -16.28811 -15.17383 -14.91241 -14.78413 -14.35477 -14.12305 -13.97928 -13.78854 -13.72881 -13.56186 -13.25428 -13.08860 -12.75999 -12.59636 -12.35376 -12.32020 -12.11905 -11.88753 -11.66753 -11.36508 -11.09750 -11.03689 -11.00901 -10.93100 -10.85248 -10.60067 -10.28172 -10.02557 -9.92262 -9.62069 -8.99037 -8.86432 -8.61779 -8.61473 -7.31788 -5.80769 -3.16703 0.58971 1.15553 1.75940 2.36013 2.71379 3.07266 3.35487 3.38868 3.43593 4.41368 4.53977 4.56117 4.67195 4.91822 4.95951 5.02702 5.05576 5.16608 5.22929 5.30880 5.32534 5.39943 5.45231 5.46518 5.56896 5.59643 5.60222 5.74727 5.80373 5.82750 5.89973 5.91417 6.03497 6.05668 6.12493 6.16547 6.22136 6.26252 6.34528 6.49554 6.76221 6.90122 7.35541 7.94727 8.06468 8.38344 9.16490 9.89332 10.09047 11.37423 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.019153 B = 0.003274 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.578571 B = 8548.924416 C = 8787.385936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.039 4.039 3 C -0.140 4.140 4 C -0.048 4.048 5 C -0.133 4.133 6 C -0.248 4.248 7 S 0.219 5.781 8 C -0.248 4.248 9 C 0.592 3.408 10 O -0.534 6.534 11 N -0.594 5.594 12 C 0.107 3.893 13 C -0.150 4.150 14 C 0.184 3.816 15 N -0.748 5.748 16 C -0.244 4.244 17 H 0.091 0.909 18 C 0.006 3.994 19 N -0.933 5.933 20 Si 0.884 3.116 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.277 1.277 24 C -0.143 4.143 25 C 0.116 3.884 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.076 0.924 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.141 0.859 34 H 0.167 0.833 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.059 0.941 38 H 0.081 0.919 39 H 0.058 0.942 40 H 0.361 0.639 41 H 0.260 0.740 42 H 0.062 0.938 43 H 0.079 0.921 44 H 0.090 0.910 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.848 23.875 -6.031 24.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.060 4.060 3 C -0.198 4.198 4 C -0.062 4.062 5 C -0.164 4.164 6 C -0.385 4.385 7 S 0.488 5.512 8 C -0.369 4.369 9 C 0.377 3.623 10 O -0.412 6.412 11 N -0.327 5.327 12 C -0.016 4.016 13 C -0.191 4.191 14 C 0.074 3.926 15 N -0.390 5.390 16 C -0.374 4.374 17 H 0.108 0.892 18 C -0.190 4.190 19 N -0.581 5.581 20 Si 0.714 3.286 21 H -0.211 1.211 22 H -0.218 1.218 23 H -0.204 1.204 24 C -0.182 4.182 25 C -0.006 4.006 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.095 0.905 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.159 0.841 34 H 0.184 0.816 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.078 0.922 38 H 0.100 0.900 39 H 0.076 0.924 40 H 0.194 0.806 41 H 0.070 0.930 42 H 0.081 0.919 43 H 0.097 0.903 44 H 0.109 0.891 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.052 22.810 -6.413 23.783 hybrid contribution 0.202 0.462 0.092 0.513 sum 2.254 23.273 -6.321 24.221 Atomic orbital electron populations 1.21831 0.93837 1.02320 1.01977 1.19861 0.95993 0.95933 0.94206 1.21797 1.01593 0.94602 1.01811 1.19239 0.96225 0.94829 0.95937 1.19717 1.03410 1.02488 0.90813 1.25206 1.05482 1.03319 1.04512 1.83364 1.42827 1.30324 0.94708 1.24356 1.08912 1.05344 0.98260 1.17036 0.82922 0.79833 0.82467 1.90817 1.24538 1.61862 1.64026 1.48131 1.32985 1.28550 1.23039 1.21993 0.87721 0.94142 0.97765 1.22719 1.02731 0.92371 1.01263 1.20147 0.94931 0.84018 0.93523 1.42799 1.06195 1.01061 1.88931 1.19059 0.89021 0.86930 1.42409 0.89159 1.24668 0.96706 0.95788 1.01872 1.69699 1.29735 1.01615 1.57041 0.86566 0.85930 0.78210 0.77902 1.21065 1.21763 1.20351 1.22249 0.99684 0.93830 1.02395 1.21659 1.00600 0.94399 0.83961 0.92371 0.92156 0.92267 0.90534 0.92300 0.92474 0.92187 0.84141 0.81556 0.91096 0.90421 0.92240 0.90028 0.92416 0.80631 0.93036 0.91877 0.90276 0.89141 0.91037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 8.99 37.16 0.33 -0.80 16 2 C -0.04 -0.39 3.12 -91.77 -0.29 -0.67 16 3 C -0.14 -1.21 9.09 37.16 0.34 -0.87 16 4 C -0.05 -0.53 4.72 -105.48 -0.50 -1.02 16 5 C -0.13 -1.22 9.17 -41.41 -0.38 -1.60 16 6 C -0.25 -2.20 10.92 29.18 0.32 -1.88 16 7 S 0.22 2.37 22.63 -107.50 -2.43 -0.07 16 8 C -0.25 -3.15 4.32 -36.79 -0.16 -3.31 16 9 C 0.59 8.82 6.42 -12.90 -0.08 8.74 16 10 O -0.53 -9.55 16.53 5.18 0.09 -9.46 16 11 N -0.59 -8.25 2.97 -174.08 -0.52 -8.77 16 12 C 0.11 1.41 6.34 -3.49 -0.02 1.39 16 13 C -0.15 -2.42 5.67 -26.39 -0.15 -2.57 16 14 C 0.18 3.30 2.73 -67.88 -0.19 3.11 16 15 N -0.75 -17.01 4.93 -53.38 -0.26 -17.27 16 16 C -0.24 -6.65 10.41 -15.06 -0.16 -6.81 16 17 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 18 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 19 N -0.93 -28.81 13.97 55.49 0.78 -28.03 16 20 Si 0.88 21.85 27.74 -169.99 -4.71 17.13 16 21 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 23 H -0.28 -6.49 6.52 56.52 0.37 -6.13 16 24 C -0.14 -2.17 5.55 -26.61 -0.15 -2.32 16 25 C 0.12 1.58 6.44 -3.71 -0.02 1.55 16 26 H 0.06 0.40 7.52 -51.93 -0.39 0.01 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.88 7.13 -51.93 -0.37 0.51 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.42 7.99 -51.93 -0.42 0.01 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.14 1.00 7.69 -52.49 -0.40 0.60 16 34 H 0.17 1.06 8.06 -52.49 -0.42 0.64 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.08 0.95 5.99 -51.93 -0.31 0.64 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 39 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 40 H 0.36 8.21 5.66 -40.82 -0.23 7.98 16 41 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 42 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.09 1.26 6.99 -51.93 -0.36 0.89 16 45 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 371.78 15.07 5.60 5.60 Total: -1.00 -32.20 371.78 -9.81 -42.01 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -7.15 Total: 5.85 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: -1.20 Total: -7.00 kcal Atomic # 7 Polarization: -54.07 SS G_CDS: 0.00 Total: -54.07 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.09 Total: -9.46 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.71 Total: 17.13 kcal Atomic # 16 Polarization: 2.37 SS G_CDS: -2.43 Total: -0.07 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.20 -9.81 -42.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997361127.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.658 kcal (2) G-P(sol) polarization free energy of solvation -32.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds