Wall clock time and date at job start Tue Mar 31 2020 13:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47127 * 2 1 4 4 C 1.50701 * 109.46879 * 240.00327 * 2 1 3 5 5 C 1.37468 * 123.35218 * 55.08007 * 4 2 1 6 6 C 1.33819 * 115.09929 * 179.97438 * 5 4 2 7 7 S 1.70618 * 110.95673 * 359.97438 * 6 5 4 8 8 C 1.36651 * 123.34764 * 234.78271 * 4 2 1 9 9 C 1.46579 * 125.46024 * 0.02562 * 8 4 2 10 10 O 1.21710 * 119.99689 * 274.86417 * 9 8 4 11 11 N 1.34773 * 120.00532 * 94.86250 * 9 8 4 12 12 C 1.46930 * 120.62921 * 4.82866 * 11 9 8 13 13 C 1.53620 * 108.54177 * 126.36711 * 12 11 9 14 14 C 1.53044 * 109.23969 * 54.86137 * 13 12 11 15 15 N 1.46506 * 109.45924 * 178.48680 * 14 13 12 16 16 C 1.36937 * 119.99905 * 275.06625 * 15 14 13 17 17 H 1.07992 * 120.00295 * 0.02562 * 16 15 14 18 18 C 1.38809 * 119.99619 * 179.97438 * 16 15 14 19 19 N 1.31619 * 119.99963 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 120.00168 * 0.02562 * 18 16 15 21 21 H 1.48506 * 109.46783 * 90.00142 * 20 18 16 22 22 H 1.48496 * 109.47253 * 209.99764 * 20 18 16 23 23 H 1.48498 * 109.47399 * 330.00107 * 20 18 16 24 24 C 1.53040 * 109.53850 * 298.50826 * 14 13 12 25 25 C 1.46923 * 120.63278 * 185.11268 * 11 9 8 26 26 H 1.09003 * 109.47518 * 59.99623 * 1 2 3 27 27 H 1.09005 * 109.46910 * 300.00090 * 1 2 3 28 28 H 1.09002 * 109.47049 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47277 * 119.99908 * 2 1 3 30 30 H 1.09001 * 109.47065 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.46962 * 300.00074 * 3 2 1 32 32 H 1.08996 * 109.47196 * 60.00325 * 3 2 1 33 33 H 1.07996 * 122.45142 * 359.93979 * 5 4 2 34 34 H 1.07999 * 124.52289 * 179.97438 * 6 5 4 35 35 H 1.08998 * 109.58629 * 246.20797 * 12 11 9 36 36 H 1.09005 * 109.58163 * 6.62570 * 12 11 9 37 37 H 1.09001 * 109.63759 * 294.86602 * 13 12 11 38 38 H 1.09002 * 109.42946 * 174.72154 * 13 12 11 39 39 H 1.09003 * 109.46308 * 58.52745 * 14 13 12 40 40 H 0.96993 * 119.99604 * 95.06597 * 15 14 13 41 41 H 0.97002 * 119.99883 * 180.02562 * 19 18 16 42 42 H 1.09001 * 109.49298 * 301.41900 * 24 14 13 43 43 H 1.08997 * 109.52666 * 181.33504 * 24 14 13 44 44 H 1.08996 * 109.58756 * 353.36913 * 25 11 9 45 45 H 1.09002 * 109.58996 * 113.65832 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 -1.2305 5 6 1.6644 -0.3607 -2.5081 6 6 2.2099 -1.1027 -3.4790 7 16 3.2342 -2.3019 -2.8281 8 6 2.9033 -1.7624 -1.1876 9 6 3.4693 -2.3486 0.0307 10 8 4.4679 -1.8654 0.5313 11 7 2.8840 -3.4226 0.5967 12 6 1.7420 -4.0814 -0.0518 13 6 2.0599 -5.5771 -0.1991 14 6 2.4218 -6.1532 1.1719 15 7 2.6909 -7.5875 1.0430 16 6 1.6569 -8.4844 1.0835 17 1 0.6431 -8.1345 1.2099 18 6 1.9118 -9.8434 0.9608 19 7 0.9181 -10.7056 1.0002 20 14 3.6653 -10.4487 0.7413 21 1 4.2697 -10.7083 2.0728 22 1 3.6601 -11.7034 -0.0530 23 1 4.4603 -9.4157 0.0298 24 6 3.6680 -5.4471 1.7110 25 6 3.3719 -3.9532 1.8770 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 0.8899 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 0.9845 0.4529 -2.7132 34 1 2.0263 -0.9613 -4.5338 35 1 0.8499 -3.9532 0.5612 36 1 1.5778 -3.6426 -1.0360 37 1 2.8996 -5.7077 -0.8818 38 1 1.1862 -6.0965 -0.5927 39 1 1.5911 -6.0002 1.8609 40 1 3.6014 -7.9018 0.9290 41 1 1.0963 -11.6552 0.9149 42 1 4.4924 -5.5788 1.0102 43 1 3.9394 -5.8737 2.6765 44 1 4.2834 -3.4300 2.1659 45 1 2.6109 -3.8126 2.6447 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997361127.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:34 Heat of formation + Delta-G solvation = -18.206896 kcal Electronic energy + Delta-G solvation = -25516.856847 eV Core-core repulsion = 22046.018526 eV Total energy + Delta-G solvation = -3470.838322 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.45500 -39.63034 -38.64872 -36.27533 -35.02305 -33.98111 -32.47220 -31.60382 -30.42078 -27.98976 -26.85641 -25.62667 -24.38319 -23.92118 -22.79259 -22.17552 -21.04032 -19.68986 -19.06978 -18.53937 -17.78971 -17.25133 -16.73088 -16.17046 -15.88233 -15.87727 -15.15279 -15.05184 -15.01379 -14.70667 -14.62104 -14.40995 -14.35898 -14.17176 -13.63096 -13.46581 -13.29385 -13.23571 -12.95078 -12.91672 -12.66638 -12.37485 -12.26004 -12.15216 -12.05839 -11.99721 -11.78842 -11.74199 -11.63360 -11.37728 -11.20305 -10.93590 -9.81958 -9.69733 -9.41551 -9.30797 -8.01178 -5.34208 -0.21262 0.28369 1.00058 1.38576 1.40227 1.47450 1.60650 1.63767 1.99255 2.48813 3.29657 3.40713 3.52903 3.81782 3.84681 3.92731 4.00842 4.09875 4.26605 4.27245 4.30065 4.33713 4.46525 4.53860 4.60815 4.67652 4.75702 4.78322 4.80560 4.81757 4.95173 4.98171 5.01260 5.06101 5.13999 5.21717 5.25357 5.38672 5.40869 5.43868 5.50653 5.53902 5.78933 6.22423 6.23328 6.93760 7.08693 7.85061 8.03461 9.20190 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.019153 B = 0.003274 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.578571 B = 8548.924416 C = 8787.385936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.042 4.042 3 C -0.137 4.137 4 C -0.039 4.039 5 C -0.140 4.140 6 C -0.228 4.228 7 S 0.201 5.799 8 C -0.287 4.287 9 C 0.595 3.405 10 O -0.572 6.572 11 N -0.594 5.594 12 C 0.119 3.881 13 C -0.140 4.140 14 C 0.177 3.823 15 N -0.752 5.752 16 C -0.224 4.224 17 H 0.062 0.938 18 C -0.062 4.062 19 N -0.983 5.983 20 Si 0.950 3.050 21 H -0.280 1.280 22 H -0.298 1.298 23 H -0.256 1.256 24 C -0.131 4.131 25 C 0.119 3.881 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.038 0.962 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.168 0.832 34 H 0.197 0.803 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.052 0.948 38 H 0.065 0.935 39 H 0.054 0.946 40 H 0.363 0.637 41 H 0.257 0.743 42 H 0.057 0.943 43 H 0.085 0.915 44 H 0.089 0.911 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.945 26.242 -7.120 27.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.063 4.063 3 C -0.194 4.194 4 C -0.053 4.053 5 C -0.170 4.170 6 C -0.365 4.365 7 S 0.469 5.531 8 C -0.407 4.407 9 C 0.382 3.618 10 O -0.453 6.453 11 N -0.326 5.326 12 C -0.004 4.004 13 C -0.181 4.181 14 C 0.069 3.931 15 N -0.394 5.394 16 C -0.355 4.355 17 H 0.080 0.920 18 C -0.254 4.254 19 N -0.634 5.634 20 Si 0.778 3.222 21 H -0.206 1.206 22 H -0.225 1.225 23 H -0.181 1.181 24 C -0.170 4.170 25 C -0.003 4.003 26 H 0.093 0.907 27 H 0.088 0.912 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.186 0.814 34 H 0.214 0.786 35 H 0.103 0.897 36 H 0.109 0.891 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.072 0.928 40 H 0.196 0.804 41 H 0.065 0.935 42 H 0.076 0.924 43 H 0.104 0.896 44 H 0.107 0.893 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.157 25.233 -7.504 26.413 hybrid contribution 0.091 -0.150 0.422 0.457 sum 2.249 25.082 -7.082 26.160 Atomic orbital electron populations 1.21803 0.92157 1.02243 1.03267 1.19913 0.97309 0.96212 0.92856 1.21773 1.00313 0.94069 1.03263 1.19549 0.94961 0.93673 0.97163 1.19960 1.03920 1.03300 0.89844 1.25568 1.03506 1.01529 1.05908 1.83416 1.43952 1.31620 0.94065 1.24229 1.11210 1.07222 0.98048 1.17334 0.82217 0.79485 0.82785 1.90784 1.26214 1.62992 1.65306 1.48180 1.32919 1.28459 1.23000 1.21904 0.87839 0.91790 0.98916 1.22511 1.01704 0.94310 0.99553 1.20386 0.96251 0.81861 0.94594 1.42839 1.05171 1.02503 1.88935 1.19028 0.88976 0.87618 1.39837 0.91962 1.25423 1.00821 0.96143 1.03005 1.69869 1.32165 1.01750 1.59626 0.85484 0.81149 0.77610 0.77947 1.20607 1.22517 1.18107 1.22116 0.97867 0.94672 1.02357 1.21648 1.01267 0.92920 0.84459 0.90743 0.91245 0.93007 0.92895 0.94250 0.90744 0.91049 0.81446 0.78626 0.89681 0.89074 0.92869 0.91609 0.92840 0.80411 0.93450 0.92430 0.89613 0.89300 0.89208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 8.99 71.98 0.65 -1.18 16 2 C -0.04 -0.75 3.12 -11.54 -0.04 -0.79 16 3 C -0.14 -2.09 9.09 71.98 0.65 -1.43 16 4 C -0.04 -0.77 4.72 -20.42 -0.10 -0.86 16 5 C -0.14 -2.10 9.17 21.08 0.19 -1.91 16 6 C -0.23 -3.32 10.92 66.81 0.73 -2.59 16 7 S 0.20 4.05 22.63 -56.49 -1.28 2.77 16 8 C -0.29 -7.00 4.32 24.08 0.10 -6.90 16 9 C 0.59 17.50 6.42 86.42 0.55 18.06 16 10 O -0.57 -20.63 16.53 -4.38 -0.07 -20.70 16 11 N -0.59 -15.98 2.97 -822.88 -2.44 -18.42 16 12 C 0.12 2.98 6.34 86.51 0.55 3.53 16 13 C -0.14 -4.44 5.67 30.82 0.17 -4.26 16 14 C 0.18 6.25 2.73 45.02 0.12 6.38 16 15 N -0.75 -33.82 4.93 -322.80 -1.59 -35.41 16 16 C -0.22 -12.31 10.41 84.03 0.87 -11.43 16 17 H 0.06 3.72 8.06 -2.91 -0.02 3.70 16 18 C -0.06 -3.62 5.50 84.86 0.47 -3.16 16 19 N -0.98 -62.21 13.97 21.65 0.30 -61.91 16 20 Si 0.95 45.29 27.74 68.60 1.90 47.20 16 21 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 22 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 23 H -0.26 -11.16 6.52 99.48 0.65 -10.51 16 24 C -0.13 -3.86 5.55 30.67 0.17 -3.69 16 25 C 0.12 3.11 6.44 86.36 0.56 3.67 16 26 H 0.07 0.76 7.52 -2.39 -0.02 0.74 16 27 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 28 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.05 1.19 7.13 -2.39 -0.02 1.18 16 30 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.07 0.87 7.99 -2.39 -0.02 0.85 16 32 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.17 1.61 7.69 -2.91 -0.02 1.59 16 34 H 0.20 1.65 8.06 -2.91 -0.02 1.62 16 35 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.09 2.10 5.99 -2.38 -0.01 2.09 16 37 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.05 1.95 8.08 -2.39 -0.02 1.93 16 40 H 0.36 16.01 5.66 -92.71 -0.52 15.49 16 41 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 42 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 44 H 0.09 2.41 6.99 -2.39 -0.02 2.39 16 45 H 0.09 2.02 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -71.01 371.78 2.89 -68.13 By element: Atomic # 1 Polarization: 24.52 SS G_CDS: 0.40 Total: 24.92 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: 5.67 Total: -6.57 kcal Atomic # 7 Polarization: -112.02 SS G_CDS: -3.73 Total: -115.74 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -0.07 Total: -20.70 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 1.90 Total: 47.20 kcal Atomic # 16 Polarization: 4.05 SS G_CDS: -1.28 Total: 2.77 kcal Total: -71.01 2.89 -68.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997361127.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.919 kcal (2) G-P(sol) polarization free energy of solvation -71.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds