Wall clock time and date at job start Tue Mar 31 2020 13:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46924 * 2 1 4 4 C 1.50702 * 109.46941 * 240.00113 * 2 1 3 5 5 C 1.33807 * 124.52375 * 239.72177 * 4 2 1 6 6 C 1.37466 * 115.10348 * 179.85510 * 5 4 2 7 7 C 1.36652 * 113.29760 * 0.42291 * 6 5 4 8 8 C 1.46577 * 125.46127 * 179.80890 * 7 6 5 9 9 O 1.21703 * 120.00263 * 30.71137 * 8 7 6 10 10 N 1.34774 * 120.00225 * 210.71829 * 8 7 6 11 11 C 1.46926 * 120.62808 * 6.18395 * 10 8 7 12 12 C 1.53629 * 108.54107 * 126.37207 * 11 10 8 13 13 C 1.53034 * 109.24073 * 54.85930 * 12 11 10 14 14 N 1.46501 * 109.44843 * 178.49605 * 13 12 11 15 15 C 1.36935 * 120.00146 * 275.06108 * 14 13 12 16 16 H 1.08001 * 119.99914 * 359.97438 * 15 14 13 17 17 C 1.38818 * 120.00308 * 180.02562 * 15 14 13 18 18 N 1.31616 * 119.99567 * 359.97438 * 17 15 14 19 19 Si 1.86791 * 120.00198 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47493 * 59.99853 * 19 17 15 21 21 H 1.48505 * 109.47181 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.47235 * 299.99542 * 19 17 15 23 23 C 1.53040 * 109.53923 * 298.50847 * 13 12 11 24 24 C 1.46925 * 120.63630 * 186.46990 * 10 8 7 25 25 S 1.70623 * 124.52007 * 60.02404 * 4 2 1 26 26 H 1.08993 * 109.46968 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47095 * 59.99505 * 1 2 3 28 28 H 1.09003 * 109.46838 * 299.99832 * 1 2 3 29 29 H 1.08995 * 109.46810 * 120.00033 * 2 1 3 30 30 H 1.09003 * 109.47225 * 60.00405 * 3 2 1 31 31 H 1.09001 * 109.47073 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47638 * 300.00163 * 3 2 1 33 33 H 1.08009 * 122.44802 * 0.02562 * 5 4 2 34 34 H 1.07999 * 123.35735 * 180.20196 * 6 5 4 35 35 H 1.09006 * 109.59147 * 246.20280 * 11 10 8 36 36 H 1.09000 * 109.58626 * 6.63301 * 11 10 8 37 37 H 1.08999 * 109.63409 * 294.86376 * 12 11 10 38 38 H 1.09002 * 109.43131 * 174.72453 * 12 11 10 39 39 H 1.08998 * 109.46562 * 58.53284 * 13 12 11 40 40 H 0.97009 * 119.99974 * 95.05887 * 14 13 12 41 41 H 0.97003 * 120.00283 * 180.02562 * 18 17 15 42 42 H 1.09005 * 109.49603 * 301.41464 * 23 13 12 43 43 H 1.09003 * 109.50214 * 181.32040 * 23 13 12 44 44 H 1.09006 * 109.58033 * 353.36903 * 24 10 8 45 45 H 1.08992 * 109.59077 * 113.64767 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 6 2.8092 -1.7998 -1.2133 6 6 3.1517 -2.2915 -2.4504 7 6 2.6357 -1.5614 -3.4840 8 6 2.8359 -1.8444 -4.9082 9 8 2.9876 -2.9916 -5.2852 10 7 2.8521 -0.8343 -5.8002 11 6 2.8062 0.5633 -5.3493 12 6 3.9906 1.3170 -5.9733 13 6 3.9527 1.1459 -7.4936 14 7 5.0597 1.8926 -8.0963 15 6 4.9157 3.2260 -8.3729 16 1 3.9860 3.7271 -8.1472 17 6 5.9645 3.9335 -8.9445 18 7 7.0973 3.3227 -9.2200 19 14 5.7684 5.7525 -9.3212 20 1 5.4807 6.4901 -8.0649 21 1 7.0229 6.2714 -9.9231 22 1 4.6459 5.9423 -10.2748 23 6 4.0872 -0.3375 -7.8452 24 6 2.9096 -1.1098 -7.2423 25 16 1.6924 -0.2286 -2.8316 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1301 1.4426 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 3.1406 -2.2607 -0.2944 34 1 3.7701 -3.1656 -2.5917 35 1 1.8696 1.0200 -5.6692 36 1 2.8802 0.5992 -4.2624 37 1 4.9262 0.9147 -5.5851 38 1 3.9183 2.3758 -5.7245 39 1 3.0063 1.5260 -7.8784 40 1 5.8947 1.4425 -8.2993 41 1 7.8304 3.8171 -9.6191 42 1 5.0220 -0.7242 -7.4394 43 1 4.0836 -0.4564 -8.9287 44 1 3.0518 -2.1782 -7.4047 45 1 1.9803 -0.7892 -7.7129 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997383222.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:29 Heat of formation + Delta-G solvation = -1.131478 kcal Electronic energy + Delta-G solvation = -24952.878124 eV Core-core repulsion = 21482.780248 eV Total energy + Delta-G solvation = -3470.097876 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.09242 -38.45534 -37.26591 -35.34209 -34.51231 -32.14347 -31.05618 -29.54785 -28.80781 -27.53474 -25.61633 -24.44491 -23.13448 -22.67570 -21.56440 -21.00964 -19.78772 -18.62909 -17.88441 -17.07266 -16.24455 -16.00627 -15.18928 -15.05735 -14.79489 -14.71599 -14.06524 -13.99354 -13.79104 -13.61045 -13.51917 -13.19187 -13.13872 -12.90829 -12.59772 -12.34539 -12.15360 -11.90353 -11.75004 -11.58806 -11.51010 -11.45520 -11.00386 -10.91052 -10.87862 -10.72854 -10.48193 -10.27921 -9.94029 -9.84598 -9.68876 -8.95516 -8.85652 -8.51841 -8.48830 -6.99831 -5.79187 -3.08644 0.43108 1.28567 1.75845 2.31193 2.94732 3.22106 3.41547 3.46099 3.47329 4.24885 4.50878 4.54184 4.56466 4.74714 5.01832 5.03288 5.20639 5.24055 5.29626 5.31371 5.33114 5.37018 5.43415 5.45421 5.50701 5.59194 5.62467 5.69196 5.77938 5.85164 5.87790 5.92614 5.97888 6.03509 6.20387 6.22390 6.34846 6.37743 6.48866 6.60326 6.86420 7.01439 7.43123 7.65926 8.14546 8.38906 9.50055 10.07430 10.42246 11.43278 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015033 B = 0.003212 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.075378 B = 8714.857378 C =10026.203564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.027 4.027 3 C -0.150 4.150 4 C -0.206 4.206 5 C -0.153 4.153 6 C -0.059 4.059 7 C -0.266 4.266 8 C 0.590 3.410 9 O -0.538 6.538 10 N -0.601 5.601 11 C 0.094 3.906 12 C -0.146 4.146 13 C 0.179 3.821 14 N -0.723 5.723 15 C -0.242 4.242 16 H 0.070 0.930 17 C -0.012 4.012 18 N -0.932 5.932 19 Si 0.907 3.093 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C -0.139 4.139 24 C 0.118 3.882 25 S 0.228 5.772 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.087 0.913 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.140 0.860 34 H 0.149 0.851 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.061 0.939 38 H 0.077 0.923 39 H 0.049 0.951 40 H 0.384 0.616 41 H 0.256 0.744 42 H 0.064 0.936 43 H 0.078 0.922 44 H 0.090 0.910 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.440 -8.053 18.519 24.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.047 4.047 3 C -0.208 4.208 4 C -0.325 4.325 5 C -0.183 4.183 6 C -0.092 4.092 7 C -0.386 4.386 8 C 0.377 3.623 9 O -0.417 6.417 10 N -0.334 5.334 11 C -0.031 4.031 12 C -0.188 4.188 13 C 0.069 3.931 14 N -0.364 5.364 15 C -0.373 4.373 16 H 0.088 0.912 17 C -0.209 4.209 18 N -0.580 5.580 19 Si 0.738 3.262 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.212 1.212 23 C -0.178 4.178 24 C -0.004 4.004 25 S 0.497 5.503 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.105 0.895 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.157 0.843 34 H 0.166 0.834 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.080 0.920 38 H 0.095 0.905 39 H 0.067 0.933 40 H 0.218 0.782 41 H 0.066 0.934 42 H 0.083 0.917 43 H 0.096 0.904 44 H 0.108 0.892 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.239 -7.278 17.612 23.789 hybrid contribution 1.227 -0.221 0.524 1.352 sum -13.012 -7.499 18.136 23.547 Atomic orbital electron populations 1.21944 0.93898 1.02417 1.02396 1.19752 0.95896 0.95751 0.93308 1.21955 1.01860 0.94515 1.02447 1.24563 1.05017 1.01592 1.01360 1.19907 1.02016 0.97672 0.98711 1.20658 0.98799 0.99371 0.90342 1.24582 1.12145 1.04229 0.97611 1.17015 0.76706 0.84885 0.83697 1.90799 1.50782 1.20603 1.79510 1.48017 1.72134 1.06275 1.06932 1.22356 1.00594 0.80654 0.99447 1.22733 0.96213 1.00095 0.99725 1.20168 0.92973 0.89685 0.90312 1.42427 1.13269 1.07678 1.72991 1.19189 0.98497 0.85702 1.33880 0.91193 1.24752 0.96161 0.98156 1.01789 1.69653 1.04012 1.35559 1.48799 0.86281 0.76713 0.85225 0.78027 1.21266 1.21716 1.21243 1.22209 0.97808 0.96674 1.01109 1.21664 0.98960 1.01571 0.78252 1.83223 1.47715 1.24854 0.94466 0.92157 0.92293 0.91762 0.89489 0.91768 0.91937 0.92192 0.84251 0.83361 0.91004 0.90081 0.92048 0.90455 0.93324 0.78223 0.93420 0.91710 0.90373 0.89158 0.91290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.08 37.16 0.34 -0.61 16 2 C -0.03 -0.19 3.25 -91.77 -0.30 -0.49 16 3 C -0.15 -1.04 9.08 37.16 0.34 -0.70 16 4 C -0.21 -1.94 4.95 -35.86 -0.18 -2.12 16 5 C -0.15 -1.51 9.95 -41.42 -0.41 -1.92 16 6 C -0.06 -0.70 10.14 -40.44 -0.41 -1.11 16 7 C -0.27 -3.53 5.73 -36.79 -0.21 -3.74 16 8 C 0.59 9.32 7.58 -12.90 -0.10 9.23 16 9 O -0.54 -9.99 16.41 5.19 0.09 -9.91 16 10 N -0.60 -8.92 2.97 -174.08 -0.52 -9.44 16 11 C 0.09 1.29 5.55 -3.48 -0.02 1.27 16 12 C -0.15 -2.49 5.67 -26.39 -0.15 -2.64 16 13 C 0.18 3.40 2.73 -67.89 -0.19 3.22 16 14 N -0.72 -17.66 5.12 -53.39 -0.27 -17.94 16 15 C -0.24 -6.51 9.93 -15.06 -0.15 -6.66 16 16 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 17 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 18 N -0.93 -27.88 13.06 55.49 0.72 -27.15 16 19 Si 0.91 21.98 29.55 -169.99 -5.02 16.95 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 C -0.14 -2.31 5.55 -26.61 -0.15 -2.46 16 24 C 0.12 1.72 6.44 -3.71 -0.02 1.70 16 25 S 0.23 2.38 18.54 -107.50 -1.99 0.38 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.39 7.90 -51.93 -0.41 -0.02 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.09 0.55 8.07 -51.93 -0.42 0.13 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.44 7.90 -51.93 -0.41 0.03 16 33 H 0.14 1.08 8.06 -52.48 -0.42 0.66 16 34 H 0.15 1.70 8.06 -52.49 -0.42 1.27 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.08 1.02 3.98 -26.19 -0.10 0.92 16 37 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 39 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 40 H 0.38 10.12 7.80 -40.82 -0.32 9.80 16 41 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 43 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 44 H 0.09 1.35 7.00 -51.93 -0.36 0.99 16 45 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 372.50 15.07 5.61 5.61 Total: -1.00 -31.59 372.50 -10.15 -41.74 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -7.06 Total: 7.25 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: -1.70 Total: -7.50 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: -0.07 Total: -54.53 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.09 Total: -9.91 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 16 Polarization: 2.38 SS G_CDS: -1.99 Total: 0.38 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.59 -10.15 -41.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997383222.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.604 kcal (2) G-P(sol) polarization free energy of solvation -31.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds