Wall clock time and date at job start Tue Mar 31 2020 13:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46924 * 2 1 4 4 C 1.50702 * 109.46941 * 240.00113 * 2 1 3 5 5 C 1.33807 * 124.52375 * 239.72177 * 4 2 1 6 6 C 1.37466 * 115.10348 * 179.85510 * 5 4 2 7 7 C 1.36652 * 113.29760 * 0.42291 * 6 5 4 8 8 C 1.46577 * 125.46127 * 179.80890 * 7 6 5 9 9 O 1.21703 * 120.00263 * 30.71137 * 8 7 6 10 10 N 1.34774 * 120.00225 * 210.71829 * 8 7 6 11 11 C 1.46926 * 120.62808 * 6.18395 * 10 8 7 12 12 C 1.53629 * 108.54107 * 126.37207 * 11 10 8 13 13 C 1.53034 * 109.24073 * 54.85930 * 12 11 10 14 14 N 1.46501 * 109.44843 * 178.49605 * 13 12 11 15 15 C 1.36935 * 120.00146 * 275.06108 * 14 13 12 16 16 H 1.08001 * 119.99914 * 359.97438 * 15 14 13 17 17 C 1.38818 * 120.00308 * 180.02562 * 15 14 13 18 18 N 1.31616 * 119.99567 * 359.97438 * 17 15 14 19 19 Si 1.86791 * 120.00198 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47493 * 59.99853 * 19 17 15 21 21 H 1.48505 * 109.47181 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.47235 * 299.99542 * 19 17 15 23 23 C 1.53040 * 109.53923 * 298.50847 * 13 12 11 24 24 C 1.46925 * 120.63630 * 186.46990 * 10 8 7 25 25 S 1.70623 * 124.52007 * 60.02404 * 4 2 1 26 26 H 1.08993 * 109.46968 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47095 * 59.99505 * 1 2 3 28 28 H 1.09003 * 109.46838 * 299.99832 * 1 2 3 29 29 H 1.08995 * 109.46810 * 120.00033 * 2 1 3 30 30 H 1.09003 * 109.47225 * 60.00405 * 3 2 1 31 31 H 1.09001 * 109.47073 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47638 * 300.00163 * 3 2 1 33 33 H 1.08009 * 122.44802 * 0.02562 * 5 4 2 34 34 H 1.07999 * 123.35735 * 180.20196 * 6 5 4 35 35 H 1.09006 * 109.59147 * 246.20280 * 11 10 8 36 36 H 1.09000 * 109.58626 * 6.63301 * 11 10 8 37 37 H 1.08999 * 109.63409 * 294.86376 * 12 11 10 38 38 H 1.09002 * 109.43131 * 174.72453 * 12 11 10 39 39 H 1.08998 * 109.46562 * 58.53284 * 13 12 11 40 40 H 0.97009 * 119.99974 * 95.05887 * 14 13 12 41 41 H 0.97003 * 120.00283 * 180.02562 * 18 17 15 42 42 H 1.09005 * 109.49603 * 301.41464 * 23 13 12 43 43 H 1.09003 * 109.50214 * 181.32040 * 23 13 12 44 44 H 1.09006 * 109.58033 * 353.36903 * 24 10 8 45 45 H 1.08992 * 109.59077 * 113.64767 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 6 2.8092 -1.7998 -1.2133 6 6 3.1517 -2.2915 -2.4504 7 6 2.6357 -1.5614 -3.4840 8 6 2.8359 -1.8444 -4.9082 9 8 2.9876 -2.9916 -5.2852 10 7 2.8521 -0.8343 -5.8002 11 6 2.8062 0.5633 -5.3493 12 6 3.9906 1.3170 -5.9733 13 6 3.9527 1.1459 -7.4936 14 7 5.0597 1.8926 -8.0963 15 6 4.9157 3.2260 -8.3729 16 1 3.9860 3.7271 -8.1472 17 6 5.9645 3.9335 -8.9445 18 7 7.0973 3.3227 -9.2200 19 14 5.7684 5.7525 -9.3212 20 1 5.4807 6.4901 -8.0649 21 1 7.0229 6.2714 -9.9231 22 1 4.6459 5.9423 -10.2748 23 6 4.0872 -0.3375 -7.8452 24 6 2.9096 -1.1098 -7.2423 25 16 1.6924 -0.2286 -2.8316 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1301 1.4426 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 3.1406 -2.2607 -0.2944 34 1 3.7701 -3.1656 -2.5917 35 1 1.8696 1.0200 -5.6692 36 1 2.8802 0.5992 -4.2624 37 1 4.9262 0.9147 -5.5851 38 1 3.9183 2.3758 -5.7245 39 1 3.0063 1.5260 -7.8784 40 1 5.8947 1.4425 -8.2993 41 1 7.8304 3.8171 -9.6191 42 1 5.0220 -0.7242 -7.4394 43 1 4.0836 -0.4564 -8.9287 44 1 3.0518 -2.1782 -7.4047 45 1 1.9803 -0.7892 -7.7129 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997383222.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:28 Heat of formation + Delta-G solvation = -19.060716 kcal Electronic energy + Delta-G solvation = -24953.655594 eV Core-core repulsion = 21482.780248 eV Total energy + Delta-G solvation = -3470.875346 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.30700 -39.34978 -38.56655 -36.18909 -36.03053 -33.89480 -32.37187 -31.13589 -29.89637 -28.02660 -26.91815 -25.78300 -24.55479 -24.08341 -22.38264 -22.04948 -21.07879 -19.64640 -19.15278 -18.87883 -17.33693 -16.99208 -16.66993 -16.36405 -15.95926 -15.49539 -15.40049 -15.32626 -14.99992 -14.85600 -14.69603 -14.43828 -14.15904 -13.97020 -13.54175 -13.37900 -13.25762 -13.00796 -12.90404 -12.79470 -12.69194 -12.32553 -12.27165 -12.20943 -12.09673 -12.06204 -12.01694 -11.73219 -11.45949 -11.34291 -11.18615 -10.87144 -9.90216 -9.57633 -9.38351 -8.99054 -7.91955 -5.21170 -0.47286 0.41074 0.92052 1.40395 1.49456 1.52167 1.58070 1.80516 2.11190 2.58162 3.40327 3.43416 3.61883 3.78594 3.84836 3.99063 4.01370 4.10734 4.22117 4.30561 4.33266 4.34264 4.45263 4.56188 4.63340 4.67921 4.77352 4.79072 4.80915 4.84689 4.94915 4.96707 5.01403 5.07960 5.11456 5.21535 5.28195 5.34968 5.36297 5.43290 5.45140 5.53639 5.56272 6.24007 6.29261 6.94900 7.35237 8.10307 8.33797 9.31611 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015033 B = 0.003212 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.075378 B = 8714.857378 C =10026.203564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.027 4.027 3 C -0.151 4.151 4 C -0.194 4.194 5 C -0.161 4.161 6 C -0.058 4.058 7 C -0.306 4.306 8 C 0.587 3.413 9 O -0.576 6.576 10 N -0.603 5.603 11 C 0.102 3.898 12 C -0.136 4.136 13 C 0.174 3.826 14 N -0.738 5.738 15 C -0.237 4.237 16 H 0.082 0.918 17 C -0.078 4.078 18 N -0.973 5.973 19 Si 0.972 3.028 20 H -0.276 1.276 21 H -0.300 1.300 22 H -0.277 1.277 23 C -0.128 4.128 24 C 0.123 3.877 25 S 0.252 5.748 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.080 0.920 29 H 0.102 0.898 30 H 0.080 0.920 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.163 0.837 34 H 0.145 0.855 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.041 0.959 38 H 0.071 0.929 39 H 0.056 0.944 40 H 0.370 0.630 41 H 0.249 0.751 42 H 0.047 0.953 43 H 0.077 0.923 44 H 0.086 0.914 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.712 -7.104 20.659 26.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.048 4.048 3 C -0.209 4.209 4 C -0.313 4.313 5 C -0.190 4.190 6 C -0.092 4.092 7 C -0.426 4.426 8 C 0.376 3.624 9 O -0.458 6.458 10 N -0.334 5.334 11 C -0.022 4.022 12 C -0.177 4.177 13 C 0.066 3.934 14 N -0.377 5.377 15 C -0.368 4.368 16 H 0.099 0.901 17 C -0.270 4.270 18 N -0.624 5.624 19 Si 0.801 3.199 20 H -0.202 1.202 21 H -0.227 1.227 22 H -0.203 1.203 23 C -0.167 4.167 24 C 0.001 3.999 25 S 0.522 5.478 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.099 0.901 29 H 0.120 0.880 30 H 0.099 0.901 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.181 0.819 34 H 0.163 0.837 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.060 0.940 38 H 0.090 0.910 39 H 0.074 0.926 40 H 0.201 0.799 41 H 0.058 0.942 42 H 0.066 0.934 43 H 0.096 0.904 44 H 0.104 0.896 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -16.572 -6.323 19.777 26.566 hybrid contribution 1.878 -0.566 -0.029 1.962 sum -14.693 -6.890 19.749 25.561 Atomic orbital electron populations 1.21958 0.93068 1.02552 1.03080 1.19896 0.96514 0.95776 0.92580 1.21978 1.01471 0.94352 1.03104 1.24959 1.03628 1.01049 1.01706 1.20091 1.02217 0.97992 0.98733 1.20863 0.98221 0.99038 0.91058 1.24476 1.14843 1.06769 0.96496 1.17375 0.75818 0.84394 0.84774 1.90765 1.52622 1.21991 1.80401 1.48081 1.71808 1.06617 1.06916 1.22365 0.99936 0.79631 1.00230 1.22507 0.96967 1.00166 0.98090 1.20409 0.91400 0.90373 0.91241 1.42658 1.14037 1.07394 1.73573 1.19624 0.98489 0.86782 1.31940 0.90062 1.25570 0.96149 1.02407 1.02886 1.69826 1.04850 1.36997 1.50719 0.85230 0.76261 0.80320 0.78076 1.20190 1.22709 1.20286 1.22066 0.98100 0.95352 1.01195 1.21624 0.98887 1.00999 0.78421 1.82990 1.46621 1.23311 0.94886 0.92311 0.92666 0.90117 0.87958 0.90102 0.92590 0.92649 0.81913 0.83695 0.88563 0.88647 0.93982 0.90999 0.92626 0.79889 0.94196 0.93438 0.90393 0.89559 0.88869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.08 71.98 0.65 -0.78 16 2 C -0.03 -0.31 3.25 -11.54 -0.04 -0.35 16 3 C -0.15 -1.66 9.08 71.98 0.65 -1.00 16 4 C -0.19 -3.17 4.95 24.68 0.12 -3.05 16 5 C -0.16 -2.85 9.95 21.08 0.21 -2.64 16 6 C -0.06 -1.34 10.14 21.72 0.22 -1.12 16 7 C -0.31 -7.90 5.73 24.08 0.14 -7.76 16 8 C 0.59 18.47 7.58 86.42 0.66 19.12 16 9 O -0.58 -21.77 16.41 -4.36 -0.07 -21.85 16 10 N -0.60 -17.39 2.97 -822.88 -2.44 -19.83 16 11 C 0.10 2.63 5.55 86.51 0.48 3.11 16 12 C -0.14 -4.55 5.67 30.82 0.17 -4.37 16 13 C 0.17 6.55 2.73 45.02 0.12 6.68 16 14 N -0.74 -36.43 5.12 -322.82 -1.65 -38.08 16 15 C -0.24 -12.71 9.93 84.04 0.83 -11.88 16 16 H 0.08 4.10 7.83 -2.91 -0.02 4.07 16 17 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16 18 N -0.97 -59.53 13.06 21.65 0.28 -59.25 16 19 Si 0.97 45.26 29.55 68.60 2.03 47.29 16 20 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 21 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 22 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 23 C -0.13 -4.28 5.55 30.67 0.17 -4.11 16 24 C 0.12 3.50 6.44 86.36 0.56 4.05 16 25 S 0.25 4.74 18.54 -56.49 -1.05 3.69 16 26 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.05 0.58 7.90 -2.39 -0.02 0.56 16 28 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.10 0.90 8.07 -2.39 -0.02 0.88 16 30 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.05 0.66 7.90 -2.39 -0.02 0.64 16 33 H 0.16 2.06 8.06 -2.91 -0.02 2.04 16 34 H 0.15 3.33 8.06 -2.91 -0.02 3.31 16 35 H 0.10 2.07 8.14 -2.38 -0.02 2.05 16 36 H 0.10 2.23 3.98 -18.75 -0.07 2.16 16 37 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 39 H 0.06 2.04 8.08 -2.39 -0.02 2.02 16 40 H 0.37 20.11 7.80 -92.70 -0.72 19.39 16 41 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 42 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 43 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 44 H 0.09 2.57 7.00 -2.38 -0.02 2.56 16 45 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -68.93 372.50 2.71 -66.21 By element: Atomic # 1 Polarization: 29.65 SS G_CDS: 0.20 Total: 29.84 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: 5.42 Total: -8.03 kcal Atomic # 7 Polarization: -113.35 SS G_CDS: -3.81 Total: -117.16 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -0.07 Total: -21.85 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Atomic # 16 Polarization: 4.74 SS G_CDS: -1.05 Total: 3.69 kcal Total: -68.93 2.71 -66.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997383222.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.154 kcal (2) G-P(sol) polarization free energy of solvation -68.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds