Wall clock time and date at job start Tue Mar 31 2020 13:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47500 * 2 1 4 4 C 1.50705 * 109.47456 * 179.97438 * 3 2 1 5 5 C 1.33816 * 124.52224 * 89.99558 * 4 3 2 6 6 C 1.37475 * 115.10012 * 180.02562 * 5 4 3 7 7 C 1.36655 * 113.29346 * 0.02562 * 6 5 4 8 8 C 1.46588 * 125.45119 * 179.97438 * 7 6 5 9 9 O 1.21699 * 120.00278 * 329.60078 * 8 7 6 10 10 N 1.34776 * 119.99710 * 149.60154 * 8 7 6 11 11 C 1.46934 * 120.63062 * 353.65372 * 10 8 7 12 12 C 1.53191 * 108.77478 * 233.59001 * 11 10 8 13 13 C 1.53039 * 109.31108 * 305.36511 * 12 11 10 14 14 C 1.53039 * 109.54031 * 61.36871 * 13 12 11 15 15 H 1.09000 * 109.49482 * 58.58108 * 14 13 12 16 16 N 1.46501 * 109.52297 * 178.66698 * 14 13 12 17 17 C 1.36939 * 119.99739 * 204.91863 * 16 14 13 18 18 H 1.08001 * 120.00031 * 359.97438 * 17 16 14 19 19 C 1.38803 * 120.00054 * 179.97438 * 17 16 14 20 20 N 1.31616 * 120.00188 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 120.00238 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46564 * 60.00232 * 21 19 17 23 23 H 1.48498 * 109.47295 * 179.97438 * 21 19 17 24 24 H 1.48492 * 109.47248 * 300.00229 * 21 19 17 25 25 C 1.46926 * 120.63188 * 173.63865 * 10 8 7 26 26 S 1.70620 * 124.52198 * 270.27115 * 4 3 2 27 27 H 1.08995 * 109.47226 * 300.00761 * 1 2 3 28 28 H 1.09007 * 109.46529 * 60.00084 * 1 2 3 29 29 H 1.09001 * 109.47140 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47682 * 239.99824 * 2 1 3 31 31 H 1.09009 * 109.47040 * 119.99975 * 2 1 3 32 32 H 1.09003 * 109.47141 * 59.99943 * 3 2 1 33 33 H 1.09001 * 109.47521 * 299.99773 * 3 2 1 34 34 H 1.07996 * 122.44641 * 0.02831 * 5 4 3 35 35 H 1.07995 * 123.35057 * 179.97438 * 6 5 4 36 36 H 1.08999 * 109.58525 * 353.37500 * 11 10 8 37 37 H 1.09004 * 109.58247 * 113.80004 * 11 10 8 38 38 H 1.08996 * 109.49581 * 65.31623 * 12 11 10 39 39 H 1.08999 * 109.49533 * 185.38171 * 12 11 10 40 40 H 1.09001 * 109.46078 * 301.34340 * 13 12 11 41 41 H 1.09009 * 109.45983 * 181.39032 * 13 12 11 42 42 H 0.97000 * 120.00341 * 24.91894 * 16 14 13 43 43 H 0.97003 * 120.00828 * 179.97438 * 20 19 17 44 44 H 1.09000 * 109.58231 * 6.61873 * 25 10 8 45 45 H 1.09008 * 109.58392 * 246.19972 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5471 1.4424 0.0006 5 6 4.3059 1.4421 -1.1016 6 6 5.6620 1.4416 -0.8759 7 6 5.9891 1.4409 0.4509 8 6 7.3520 1.4397 0.9906 9 8 8.2521 0.9060 0.3693 10 7 7.6082 2.0297 2.1750 11 6 6.5656 2.7967 2.8704 12 6 7.1089 4.1940 3.1856 13 6 8.4190 4.0634 3.9658 14 6 9.4520 3.3249 3.1116 15 1 9.6125 3.8709 2.1819 16 7 10.7157 3.2281 3.8464 17 6 11.8955 3.0922 3.1645 18 1 11.8943 3.0559 2.0851 19 6 13.0929 3.0010 3.8606 20 7 13.0944 3.0447 5.1761 21 14 14.7022 2.8149 2.9306 22 1 14.8952 3.9847 2.0365 23 1 15.8270 2.7405 3.8973 24 1 14.6638 1.5722 2.1186 25 6 8.9353 1.9179 2.7954 26 16 4.5134 1.4359 1.4068 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5139 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8901 32 1 1.6767 1.9563 0.8900 33 1 1.6768 1.9563 -0.8900 34 1 3.8838 1.4424 -2.0956 35 1 6.3957 1.4410 -1.6684 36 1 5.6870 2.8821 2.2309 37 1 6.2974 2.2910 3.7980 38 1 7.2915 4.7317 2.2553 39 1 6.3809 4.7406 3.7850 40 1 8.2406 3.5041 4.8842 41 1 8.7951 5.0563 4.2129 42 1 10.7168 3.2603 4.8158 43 1 13.9311 2.9806 5.6627 44 1 9.6202 1.4233 2.1066 45 1 8.8603 1.3405 3.7170 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999274103.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:37 Heat of formation + Delta-G solvation = -3.463479 kcal Electronic energy + Delta-G solvation = -24664.749213 eV Core-core repulsion = 21194.550214 eV Total energy + Delta-G solvation = -3470.198999 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.98643 -38.33581 -37.14607 -35.18416 -34.48920 -32.33925 -31.26573 -30.57727 -28.49563 -27.13940 -25.09566 -24.07826 -23.68784 -21.93303 -21.82869 -21.23608 -19.70518 -18.48768 -17.91610 -17.07902 -16.21970 -16.00279 -15.30892 -15.28129 -14.92020 -14.46884 -14.32629 -14.07035 -13.94390 -13.55144 -13.46281 -13.23228 -12.89828 -12.80363 -12.73221 -12.41200 -12.24165 -12.06251 -11.78630 -11.58216 -11.43087 -11.21572 -11.09058 -10.91092 -10.81720 -10.63073 -10.53267 -10.22426 -9.86279 -9.83234 -9.63364 -9.07237 -8.81302 -8.55612 -8.34486 -6.99498 -5.77548 -3.07479 0.43372 1.27495 1.72984 2.32103 3.07559 3.33042 3.47286 3.50766 3.53058 4.31162 4.54149 4.57399 4.60483 4.63619 4.88266 4.94462 5.07442 5.08630 5.19869 5.24253 5.30240 5.37222 5.40744 5.48128 5.52214 5.59338 5.64189 5.69788 5.78982 5.84103 5.86178 5.91767 6.01564 6.04039 6.16372 6.20979 6.23375 6.34523 6.48434 6.71847 6.82654 7.00149 7.59509 7.72900 8.30809 8.40762 9.52400 10.05997 10.41543 11.44556 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.028404 B = 0.002637 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.541310 B =10614.481053 C =11212.097563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.049 4.049 4 C -0.214 4.214 5 C -0.149 4.149 6 C -0.062 4.062 7 C -0.257 4.257 8 C 0.583 3.417 9 O -0.528 6.528 10 N -0.601 5.601 11 C 0.094 3.906 12 C -0.126 4.126 13 C -0.126 4.126 14 C 0.168 3.832 15 H 0.052 0.948 16 N -0.718 5.718 17 C -0.243 4.243 18 H 0.071 0.929 19 C -0.011 4.011 20 N -0.933 5.933 21 Si 0.908 3.092 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.284 1.284 25 C 0.094 3.906 26 S 0.216 5.784 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.140 0.860 35 H 0.150 0.850 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.062 0.938 41 H 0.069 0.931 42 H 0.386 0.614 43 H 0.256 0.744 44 H 0.092 0.908 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.545 -1.687 -7.752 28.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.089 4.089 4 C -0.333 4.333 5 C -0.180 4.180 6 C -0.094 4.094 7 C -0.378 4.378 8 C 0.369 3.631 9 O -0.406 6.406 10 N -0.334 5.334 11 C -0.031 4.031 12 C -0.165 4.165 13 C -0.165 4.165 14 C 0.057 3.943 15 H 0.070 0.930 16 N -0.358 5.358 17 C -0.374 4.374 18 H 0.089 0.911 19 C -0.207 4.207 20 N -0.581 5.581 21 Si 0.738 3.262 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.211 1.211 25 C -0.030 4.030 26 S 0.485 5.515 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.157 0.843 35 H 0.167 0.833 36 H 0.101 0.899 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.081 0.919 41 H 0.088 0.912 42 H 0.220 0.780 43 H 0.066 0.934 44 H 0.111 0.889 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -27.192 -1.991 -6.618 28.057 hybrid contribution 1.191 -0.139 -1.737 2.111 sum -26.001 -2.131 -8.355 27.394 Atomic orbital electron populations 1.21780 0.95335 1.01954 1.01937 1.21571 0.95900 0.95653 1.02821 1.20216 0.87303 0.97934 1.03403 1.24471 1.01217 1.08623 0.98975 1.19899 0.92523 1.06133 0.99439 1.20701 0.96187 0.97452 0.95091 1.24683 0.97201 1.17870 0.98021 1.17064 0.86067 0.78997 0.80934 1.90840 1.45476 1.45940 1.58373 1.48150 1.14104 1.50910 1.20255 1.22127 0.90408 0.93007 0.97517 1.21848 0.98005 0.95498 1.01148 1.21834 0.94335 1.01565 0.98719 1.20489 0.86518 0.92122 0.95171 0.93028 1.42364 1.00197 1.87357 1.05897 1.19232 0.84491 1.42507 0.91168 0.91070 1.24745 0.97803 1.02600 0.95530 1.69649 1.26129 1.57180 1.05098 0.86258 0.83288 0.78097 0.78526 1.21209 1.21689 1.21095 1.22845 0.80982 1.01541 0.97664 1.83192 0.93515 1.67709 1.07083 0.92577 0.92597 0.92463 0.91505 0.91680 0.90687 0.89989 0.84251 0.83265 0.89897 0.90997 0.91472 0.90772 0.91947 0.91243 0.78046 0.93422 0.88932 0.91800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.91 37.16 0.37 -0.37 16 2 C -0.12 -0.74 5.92 -26.74 -0.16 -0.89 16 3 C -0.05 -0.32 5.65 -27.88 -0.16 -0.47 16 4 C -0.21 -1.90 5.53 -35.86 -0.20 -2.10 16 5 C -0.15 -1.44 10.00 -41.41 -0.41 -1.85 16 6 C -0.06 -0.75 10.14 -40.43 -0.41 -1.16 16 7 C -0.26 -3.50 5.73 -36.79 -0.21 -3.71 16 8 C 0.58 10.11 7.58 -12.89 -0.10 10.01 16 9 O -0.53 -11.27 16.40 5.19 0.09 -11.18 16 10 N -0.60 -9.78 2.97 -174.34 -0.52 -10.29 16 11 C 0.09 1.16 5.52 -3.71 -0.02 1.14 16 12 C -0.13 -1.56 6.08 -26.61 -0.16 -1.72 16 13 C -0.13 -1.99 5.36 -26.69 -0.14 -2.13 16 14 C 0.17 3.38 2.92 -67.81 -0.20 3.19 16 15 H 0.05 1.12 8.08 -51.93 -0.42 0.70 16 16 N -0.72 -17.92 5.13 -53.31 -0.27 -18.20 16 17 C -0.24 -6.83 9.93 -15.06 -0.15 -6.98 16 18 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 19 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 20 N -0.93 -28.12 13.06 55.49 0.72 -27.39 16 21 Si 0.91 22.86 29.55 -169.99 -5.02 17.83 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 24 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 25 C 0.09 1.82 6.03 -3.71 -0.02 1.79 16 26 S 0.22 2.15 19.27 -107.50 -2.07 0.08 16 27 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 35 H 0.15 1.79 8.06 -52.49 -0.42 1.36 16 36 H 0.08 0.90 3.99 -26.24 -0.10 0.79 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.07 1.13 8.14 -51.92 -0.42 0.70 16 42 H 0.39 10.07 7.80 -40.82 -0.32 9.75 16 43 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 44 H 0.09 2.09 7.00 -51.93 -0.36 1.73 16 45 H 0.06 1.22 8.14 -51.92 -0.42 0.80 16 LS Contribution 374.45 15.07 5.64 5.64 Total: -1.00 -32.55 374.45 -10.60 -43.15 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -7.09 Total: 6.04 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -2.07 Total: -5.68 kcal Atomic # 7 Polarization: -55.82 SS G_CDS: -0.07 Total: -55.88 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.09 Total: -11.18 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.02 Total: 17.83 kcal Atomic # 16 Polarization: 2.15 SS G_CDS: -2.07 Total: 0.08 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.55 -10.60 -43.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999274103.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.685 kcal (2) G-P(sol) polarization free energy of solvation -32.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds